TCONS_00028430 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028430
Unique NameTCONS_00028430
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length741

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028430 ID=TCONS_00028430|Name=TCONS_00028430|organism=Clytia hemisphaerica|type=transcript|length=741bp
GTCGCTACCAAATCACTTTACCAGGtTACATCCCGGAAGAGCACGAGCAT
ATTATTTGTCCACAGATGAAACAATCTTGTATTGCTGGAGTAGGTGAATG
TGCTAAACTTGAAGTTCTAACAACAATTTATGACCCAGTTGCACAGGAAT
CAAAACACATTATTTTAAACAAAGGATGTTCGTGCCAGCAGTTGTCCTCT
TTTTATTATTTGGGAGATGGGAACTAGCCTTGGTAATTTCTGTCTTTTCC
AAGAGGTACTAGGTTGGTAAGCTAACAGAATGCACCACCCTTATTTAGAC
CAATTGAACCTTTGACCTTGACAGTCAGAactgaaaaggaaaaataacgG
CTACAGAATATTTATAAAAGATTAATTTATGGTGAGGTTACatttatgaa
aaattatgttttgtactTAGTTTATAAATTTGCTCTATTTGAAATTATTA
TCTTACACATAAAGtggtattttattttcaagctgTTTAACAATTTCAAA
GTTAATCAAGAATAtttatttctttcaattttgctgtaatttaaaatatc
aacaCACGAGACACATGACACACACGTCCGTTTtcctattttgaaaattt
tccgcaaTTCCAGAATTGATGTAGGAAAATtcttcatacacgtttttttt
tatNtaagttcggttaaaactgcttgaaaagaggaaaaaattgtagtttc
ttgtcaattttttccaaactgaggctgggcatgttcttacg
Run BLAST on NCBI

transcript from alignment at sc0000678:25551..27382-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028430 ID=TCONS_00028430|Name=TCONS_00028430|organism=Clytia hemisphaerica|type=transcript|length=1832bp|location=Sequence derived from alignment at sc0000678:25551..27382- (Clytia hemisphaerica)
GTCGCTACCAAATCACTTTACCAGGGTAATGAGATAATTTCAATATTTTT
CCCGCACCTGATTGTACTGTGTTTTTTACAGACCAGGCCCATAATTACCC
ATTATGCCTTTATCAGATCCAGGTTATATCTCAGGATTGGAAATGCTATT
AACTTTGAAGTTTTGATAAGTGTTAGGTATTGACGATACAAGCATTTTTC
AGCAATAGCGGACGAGCAGTTAAGCTAAAAGTGAAAATGTTTCGTAAAAT
ACCATCTATATACACACGACTAAACAGTTTTTCACTTTGTCTTAGTTGAT
TAAATATCTATCACTAGTGAATATTTCAACTTGAAAGCTCCAGTAGTTCC
AACAGGGGTTCGAAGTGTATTTCACAGACCGGTCGGCAAAGTACCAAATA
TTCATTGGATCAAACTTATTTTTTTCTTAGTCTCTTCTTATTCTTTGACA
AATCAGTCTTCGTGAATAAAGTTCAGTTGAACCGAAAACGAGCCAATACG
TGCTTTTGGACAAATTCGCATTAAGGCAGAACAAAAGATTTTGCAAATGA
TTTCAAATTATCCATATCTACCACTGATGAAAAATGCAATCTCATAACCC
CCCCCCTTCAAGATGCTTCTACTGAAAAGTAGAAAATGTTTTAGATACTT
ATTAAAAACGTAAATCTTACTGGGTAGTCGATGATGAAATGCGGTGGATT
TTAGAGTATTTTGGATATTTTGGTTACAGTTCGGCCTCAATCCAAGATCC
TGGATGAATACCATGGCTACCTTTTGTTTTCTACTTTTTTGAAATATTCA
AATTTCAAATTTTATAACGACATCAATTACGAAGTAACAAACCAGTTTTT
CCTCCAATTTCTCTAAAAAGAAAAAATATTGAATATCGTGACGTACCGTG
GTACTCATCAGGTTCAACCTCGCCTGAGCATCGATCTCCTAGTGTCGTTC
GAGTGTCATGGTATACTCCATGACTTGGCAGCACGCGCCTGTCAAGTCAC
TGTGTCTGTGATTATTCCTACCTCCGGTAGTAGGACACATCCCGAATGAT
TCGGAGGGCATATACATATATCTTTCGGTGATAAAACTAATGTTAGTAAA
TTTTACAATATTTTAGTTACATCCCGGAAGAGCACGAGCATATTATTTGT
CCACAGATGAAACAATCTTGTATTGCTGGAGTAGGTGAATGTGCTAAACT
TGAAGTTCTAACAACAATTTATGACCCAGTTGCACAGGAATCAAAACACA
TTATTTTAAACAAAGGATGTTCGTGCCAGCAGTTGTCCTCTTTTTATTAT
TTGGGAGATGGGAACTAGCCTTGGTAATTTCTGTCTTTTCCAAGAGGTAC
TAGGTTGGTAAGCTAACAGAATGCACCACCCTTATTTAGACCAATTGAAC
CTTTGACCTTGACAGTCAGAACTGAAAAGGAAAAATAACGGCTACAGAAT
ATTTATAAAAGATTAATTTATGGTGAGGTTACATTTATGAAAAATTATGT
TTTGTACTTAGTTTATAAATTTGCTCTATTTGAAATTATTATCTTACACA
TAAAGTGGTATTTTATTTTCAAGCTGTTTAACAATTTCAAAGTTAATCAA
GAATATTTATTTCTTTCAATTTTGCTGTAATTTAAAATATCAACACACGA
GACACATGACACACACGTCCGTTTTCCTATTTTGAAAATTTTCCGCAATT
CCAGAATTGATGTAGGAAAATTCTTCATACACGTTTTTTTTTATNTAAGT
TCGGTTAAAACTGCTTGAAAAGAGGAAAAAATTGTAGTTTCTTGTCAATT
TTTTCCAAACTGAGGCTGGGCATGTTCTTACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016105XLOC_016105Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028430-exon-sc0000678-1575043694:27358..27382TCONS_00028430-exon-sc0000678-1575043694:27358..27382Clytia hemisphaericaexon
TCONS_00028430-exon-sc0000678-1575043694:25551..26266TCONS_00028430-exon-sc0000678-1575043694:25551..26266Clytia hemisphaericaexon
TCONS_00028430-exon-sc0000678-1510915933:27358..27382TCONS_00028430-exon-sc0000678-1510915933:27358..27382Clytia hemisphaericaexon
TCONS_00028430-exon-sc0000678-1510915933:25551..26266TCONS_00028430-exon-sc0000678-1510915933:25551..26266Clytia hemisphaericaexon
TCONS_00028430-exon-sc0000678-1491911889:27358..27382TCONS_00028430-exon-sc0000678-1491911889:27358..27382Clytia hemisphaericaexon
TCONS_00028430-exon-sc0000678-1491911889:25551..26266TCONS_00028430-exon-sc0000678-1491911889:25551..26266Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000678supercontigsc0000678:25551..27382 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.37007	0.396332	0	0.113462	0	0	0.135127	0.227982	0	0	0	0.0227862	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028430 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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