TCONS_00028400 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028400
Unique NameTCONS_00028400
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length652

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028400 ID=TCONS_00028400|Name=TCONS_00028400|organism=Clytia hemisphaerica|type=transcript|length=652bp
CAAAAAGAAGGTCTACCATAAAACAACCAAAAAGAAACGAAGATGGCACG
TCGTTtgcttgttttgatgtttttgactGCAGTTTATCAAAACAGCAATG
CATTTCGCTGTTATAACAATGTTACGATCAATGGGCAGACCTTGTCATCT
TGACCAACTGACTGCAAGAaTTTTCCGAACTTCGCAACCAGTTCACCTCA
ATGTGTGTATGCGGAAGCAATGGTTGATGGCTTGCCCTCTACTCAAACAC
AAACATGTTTCACTGAGGAGCTTAAAGAGCAATGTGGTACAACCATATCT
AGGGGCAACGAAAAAGTTAAAATCTGTTGCTGTGATAAACCATTATGTAA
CGATTATGACTTCGTAACTACTTGTGGTTCATGTGTCATTCAAACAAGTG
TGCTTTTTGTATCCTTCGCTTTCATCATTGGCAAATTAATGGCTTGAAGC
TGAAATGACACTGCACTCgctgaaatcaaaacatttaacCAGAAGAAAAA
CCAGGATTAGTTTTACACCTTGTGCACTTTTTTATGTTTCTCGCACCCTG
TTATATATCTAAGGTATTGCAATAAATTTAACATCTTTGTACTTAATTAA
AGGACGTAGAGTTTAACTGATTTCTCAGTAGAAATACACGCTTTACTCAA
CG
Run BLAST on NCBI

transcript from alignment at sc0000676:95135..97251-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028400 ID=TCONS_00028400|Name=TCONS_00028400|organism=Clytia hemisphaerica|type=transcript|length=2117bp|location=Sequence derived from alignment at sc0000676:95135..97251- (Clytia hemisphaerica)
CAAAAAGAAGGTAAGTCGAGTGGCTTTAAGGATAAAGATACTCTTGACAT
TTTGGATATCCAAAGAGATACCATGCTTATTCATCAATTTTCCATTTTTT
CCGAAACAGTTTATTAATTGTAATAAAGATCTTGCATCATTTTTCATCAC
CATACTAGCCTTTTATAGAGGTCTGGAAAACTCGAGCTATGTAAACTTGA
GTTATGAAAAAGCCGAGTTATGACGTCATAGCTCGGTCTTTTTAATACCT
TAATTTTCCGAGCTAAAATTAACTAGGTCATTTTAAATGTACCTTGAATT
TACGTGTTTTATAACTCGGTTTTTTTAGGTGCACCTTAATTTTCGAGTTT
CATAACATAATAATTGAATATAACAGTATCAAAAGATTTTGAGATTTTTT
TTAGCTGGATTTTTATACGAGTACTCTTCGAGACACATCTGCTTGAGAAA
GTAACTGTTGTCGTCAAAAAAAAATTCTCAAAAATGCTAACGTCAGCATA
AAGATTTGCATTTCGACGACGCCTATTTTTGGGAGCTTAGTGAACCAAAT
GAGACAAATGACCCCATTTTTGAAATCTACTCTTCAAGCTCTATCAGATG
TTGCAATCAGTTATTGCAAAACCTTGGAAAAACAACCAAAATGTTGGCTT
CTGTAAATTTGGCAGTCTGTATAGCAATGAAAATTAAAATGAATTTCGTT
TTGATTTGGAATTTCACGGTCAATCGGGCCCGTAAAACAACCAGTCAGAT
CGGTCTCGCCTAATAATTTTTATATGTTTGTTGTTTAAAAGTTTACATAT
TAGTTACCTTTTGAGTATTAGTAAATGTTGAATAAGTAAGTTTTCCATAA
GAAATTTTCATCAATTTCTCGAAAATTTAGAATTTATACCAAATACCTAG
CACAGTCCTTCCGTCGTTCATATAATGCGGAGGACGTTCAATATATGTTC
TTTTGACATTTTTTTACCTTCTTTCGTTAGGTCTACCATAAAACAACCAA
AAAGAAACGAAGATGGCACGTCGTTTGCTTGTTTTGATGTTTTTGACTGC
AGTTTATCAAAACAGCAATGCATTTCGCTGTTATAACAATGTTACGATCA
ATGGGCAGACCTTGTCATCTTGACCAACTGACTGCAAGAGTAAGTTCCCC
CTTGTATACCCCATGTTAATCACTTCGTAGTACACTCTGTGCGCATTGTC
TGTTTGATAAAAAAGTTCCCGTTCGGAGTACCTCTAAGATGAAGTATGAT
TTATAAATAGCAAAACTTATCTTATCGTTTCCCCAAAACTCCATCACAGC
GGTCGGTTTGAAAAATCTAAAACGAGAAAAGACAATAACAGTAGACCCTC
TACGGCAATGAATCTTGAAATTAGCCGTAGATAATGGGTCTGTGTACCAG
AAATTGTATACAGTGTGTCTGGAAAAACAGCAGAACAGTTTTTGTCAGTT
TATTTCTTTTTCCAGACTCAGCACAACCTTTCCATACCTAAGAATGGCTA
TGTTTGTATAACTAACTCCCTTATTACAAGCCAAAAAAATCCTATATGTT
ATTTTGCTGAGAGCCGCTCTTTGAGGTGCGACAAATTCCATGTTAAATTC
ATTGTTGTTCTTTTATTTATTTTTATTTTCTCAGATTTTCCGAACTTCGC
AACCAGTTCACCTCAATGTGTGTATGCGGAAGCAATGGTTGATGGCTTGC
CCTCTACTCAAACACAAACATGTTTCACTGAGGAGCTTAAAGAGCAATGT
GGTACAACCATATCTAGGGGCAACGAAAAAGTTAAAATCTGTTGCTGTGA
TAAACCATTATGTAACGATTATGACTTCGTAACTACTTGTGGTTCATGTG
TCATTCAAACAAGTGTGCTTTTTGTATCCTTCGCTTTCATCATTGGCAAA
TTAATGGCTTGAAGCTGAAATGACACTGCACTCGCTGAAATCAAAACATT
TAACCAGAAGAAAAACCAGGATTAGTTTTACACCTTGTGCACTTTTTTAT
GTTTCTCGCACCCTGTTATATATCTAAGGTATTGCAATAAATTTAACATC
TTTGTACTTAATTAAAGGACGTAGAGTTTAACTGATTTCTCAGTAGAAAT
ACACGCTTTACTCAACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016091XLOC_016091Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028400-exon-sc0000676-1575043694:97242..97251TCONS_00028400-exon-sc0000676-1575043694:97242..97251Clytia hemisphaericaexon
TCONS_00028400-exon-sc0000676-1575043694:96113..96271TCONS_00028400-exon-sc0000676-1575043694:96113..96271Clytia hemisphaericaexon
TCONS_00028400-exon-sc0000676-1575043694:95135..95617TCONS_00028400-exon-sc0000676-1575043694:95135..95617Clytia hemisphaericaexon
TCONS_00028400-exon-sc0000676-1510915933:97242..97251TCONS_00028400-exon-sc0000676-1510915933:97242..97251Clytia hemisphaericaexon
TCONS_00028400-exon-sc0000676-1510915933:96113..96271TCONS_00028400-exon-sc0000676-1510915933:96113..96271Clytia hemisphaericaexon
TCONS_00028400-exon-sc0000676-1510915933:95135..95617TCONS_00028400-exon-sc0000676-1510915933:95135..95617Clytia hemisphaericaexon
TCONS_00028400-exon-sc0000676-1491911889:97242..97251TCONS_00028400-exon-sc0000676-1491911889:97242..97251Clytia hemisphaericaexon
TCONS_00028400-exon-sc0000676-1491911889:96113..96271TCONS_00028400-exon-sc0000676-1491911889:96113..96271Clytia hemisphaericaexon
TCONS_00028400-exon-sc0000676-1491911889:95135..95617TCONS_00028400-exon-sc0000676-1491911889:95135..95617Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000676supercontigsc0000676:95135..97251 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.05249e-05	0	0.675607	0.279815	0	0.695897	0	1.27047e-07	0	0	0	0	0	0.42302	0	0	31.842	41.3059	0	0	195.152	162.645	1.44213	4.83547	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028400 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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