TCONS_00028399 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028399
Unique NameTCONS_00028399
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length269

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028399 ID=TCONS_00028399|Name=TCONS_00028399|organism=Clytia hemisphaerica|type=transcript|length=269bp
CCAGGTAGTTGGGAACGATTGGCTCTACCACAGTTGTGTTGGTGGATTGG
TGCAAAATGGTCTGCTTTGTAGTTTGTTGTTGCTGTGTTGCTATGGTGAT
TTGATGCCGGTTGATAAGGTACATGGTCTGCTTTGTAGTTTATCGTTGCC
GTGTTGCCATGGTGATTTGATGCTGGTTGATGAGGTACATGTCTAGTGTT
TTTATTGCCTTTATTGTTAATGGACATTTTCAAtagataatattttttta
attttttttaatttttttt
Run BLAST on NCBI

transcript from alignment at sc0000676:173787..174187+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028399 ID=TCONS_00028399|Name=TCONS_00028399|organism=Clytia hemisphaerica|type=transcript|length=401bp|location=Sequence derived from alignment at sc0000676:173787..174187+ (Clytia hemisphaerica)
CCAGGTAGTTGGGAACGATTGGCTCTACCACAGTTGTGTTGGTGGATTGG
TGCAAAATGGTCTGCTTTGTAGTTTGTTGTTGCTGTGTTGCTATGGTGAT
TTGATGCCGGTTGATAAGGTACATGGTCTGCTTTGTAGTTTATCGTTGCC
GTGTTGCCATGGTGATTTGATGCTGGTTGATGAGGTACATGGTCTGCTGT
GTAGTTTGTTGTTGCCGTGTTGCTATGGTGATTTGATGCCGGTTGATGAG
GTACATGGTCTGCTGTGTAGTTTGTTGTTGCCGTGTTGCTATGGTGATTT
GATGCCGGTTGATGAGGTACATGTCTAGTGTTTTTATTGCCTTTATTGTT
AATGGACATTTTCAAtagataatatttttttaattttttttaattttttt
t
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016090XLOC_016090Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028399-exon-sc0000676-1491911889:173787..173970TCONS_00028399-exon-sc0000676-1491911889:173787..173970Clytia hemisphaericaexon
TCONS_00028399-exon-sc0000676-1510915933:173787..173970TCONS_00028399-exon-sc0000676-1510915933:173787..173970Clytia hemisphaericaexon
TCONS_00028399-exon-sc0000676-1575043694:173787..173970TCONS_00028399-exon-sc0000676-1575043694:173787..173970Clytia hemisphaericaexon
TCONS_00028399-exon-sc0000676-1491911889:174103..174187TCONS_00028399-exon-sc0000676-1491911889:174103..174187Clytia hemisphaericaexon
TCONS_00028399-exon-sc0000676-1510915933:174103..174187TCONS_00028399-exon-sc0000676-1510915933:174103..174187Clytia hemisphaericaexon
TCONS_00028399-exon-sc0000676-1575043694:174103..174187TCONS_00028399-exon-sc0000676-1575043694:174103..174187Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000676supercontigsc0000676:173787..174187 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.62767	7.56188	3.03673	1.30509	8.46456	6.15378	7.97003	5.28879	11.1542	7.06949	8.37179	8.10804	1.14047	0	0	0	0.226491	4.59386	0.36261	0.144048	5.04844	7.518	2.1377	2.11886	1.18741	0	0.683571	2.99936	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028399 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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