TCONS_00028354 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028354
Unique NameTCONS_00028354
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length831

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028354 ID=TCONS_00028354|Name=TCONS_00028354|organism=Clytia hemisphaerica|type=transcript|length=831bp
TCTAGGTGTGGCAAGCCATACAACTGTGGGGAGAAGTGGAAATATTTCAT
CTAGAAATACAATGGTATTTTGGCAACGAAATCTTTGACGAGGTGTAACA
AACAGAGAATTTTGGAGAGTATGTGATAGTAGTCAACTTGAAATTGGTGG
AATTTTTAAAGTGGGTTCCATGGAAATGCCATCTCNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAATTTTTAAAGTGGG
TTCCATGGAAATGCCATCTCGGAAAGGGATATTCTGAAAAGGCATACTCT
GGAAAGGCTGTGCAAACCGTGAAACATTGGAGATAATGGTAGAAATTTAC
TGAGAAAACCCAGTGGTATTTGAGACTGAATTTTCTAGGCGACGTGTAGC
AAACGATAAAATTTGGTGAGCATGGTAGTTATTAACTGAGGGAACTGGTG
GTATTTTCGAAGTGAGTTTTCTAAGAAAGGTTGGCAAACCATGAAACTTT
GGAGAATGTGGTCATTATTTATTGATAGAATTCAGTACTATTTTCGGACT
GAATTTTCTAGCAGAGATGCGGGAAACTGTTGAACTGTTAAGATAACTGG
TAATAATTCATTGAGAAATGTAATCGTATTTTGAGGATGAATCCTTTCGA
GGAGGTTAGGAAACCATGGTAATTATCTATTGATAAATAGTGGTACTTTG
AGATGGAACTACCACAAGAAGTCTTATAAACCGTGATTCTTTGAGTAGGG
GTGTAACAAACAGAGTATTTTGGAGGGAGTGAATGTGGCAAACAGATGTG
GTAAACAAAAAACTGCGGAGAGCGTGGTAAT
Run BLAST on NCBI

transcript from alignment at sc0000674:170666..171496

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028354 ID=TCONS_00028354|Name=TCONS_00028354|organism=Clytia hemisphaerica|type=transcript|length=831bp|location=Sequence derived from alignment at sc0000674:170666..171496 (Clytia hemisphaerica)
ATTACCACGCTCTCCGCAGTTTTTTGTTTACCACATCTGTTTGCCACATT
CACTCCCTCCAAAATACTCTGTTTGTTACACCCCTACTCAAAGAATCACG
GTTTATAAGACTTCTTGTGGTAGTTCCATCTCAAAGTACCACTATTTATC
AATAGATAATTACCATGGTTTCCTAACCTCCTCGAAAGGATTCATCCTCA
AAATACGATTACATTTCTCAATGAATTATTACCAGTTATCTTAACAGTTC
AACAGTTTCCCGCATCTCTGCTAGAAAATTCAGTCCGAAAATAGTACTGA
ATTCTATCAATAAATAATGACCACATTCTCCAAAGTTTCATGGTTTGCCA
ACCTTTCTTAGAAAACTCACTTCGAAAATACCACCAGTTCCCTCAGTTAA
TAACTACCATGCTCACCAAATTTTATCGTTTGCTACACGTCGCCTAGAAA
ATTCAGTCTCAAATACCACTGGGTTTTCTCAGTAAATTTCTACCATTATC
TCCAATGTTTCACGGTTTGCACAGCCTTTCCAGAGTATGCCTTTTCAGAA
TATCCCTTTCCGAGATGGCATTTCCATGGAACCCACTTTAAAAATTCCNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGA
TGGCATTTCCATGGAACCCACTTTAAAAATTCCACCAATTTCAAGTTGAC
TACTATCACATACTCTCCAAAATTCTCTGTTTGTTACACCTCGTCAAAGA
TTTCGTTGCCAAAATACCATTGTATTTCTAGATGAAATATTTCCACTTCT
CCCCACAGTTGTATGGCTTGCCACACCTAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016068XLOC_016068Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028354-exon-sc0000674-1491911889:170666..171496TCONS_00028354-exon-sc0000674-1491911889:170666..171496Clytia hemisphaericaexon
TCONS_00028354-exon-sc0000674-1510915933:170666..171496TCONS_00028354-exon-sc0000674-1510915933:170666..171496Clytia hemisphaericaexon
TCONS_00028354-exon-sc0000674-1575043694:170666..171496TCONS_00028354-exon-sc0000674-1575043694:170666..171496Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000674supercontigsc0000674:170666..171496 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.829897	1.54443	0.30893	0.252732	0.307677	0.137817	0.586653	0.343261	0.38452	0.604189	0.346724	0.495202	0.227606	0.0787903	0	0.0764078	0	0.0969612	0.0713402	0.253792	0.110295	0.0806974	0.0653988	0.237828	0.367436	0.715791	1.16436	0.956865	0.0633079	0.156902
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028354 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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