TCONS_00028351 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028351
Unique NameTCONS_00028351
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length519

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028351 ID=TCONS_00028351|Name=TCONS_00028351|organism=Clytia hemisphaerica|type=transcript|length=519bp
tgagaaaagtcaaaaacatccGGCCTAATGTCCAAATTACTAACAAAGTG
TTGTACGGCAAGCTGCACCAATTGAGCAGTCTTATCCAGAAAAGAAGATT
GCAGTTAGCAGGTCACGTCATCAGAGGAAACGAGCCGGCATCTAAACTTC
TCCTTTGGCAGCCAACATTCTTAACAAAGAAGAGAGGTCGTCCACACAAG
ACACTACTCAAAGTCTTAGAACAAGAGACTGGACTTGACAAAGGTGAGAT
GGTTCGTTTGGCGCACAACAGGGTCAAATGGAAAGACATGGTCATGTCAT
CACTTTCAAGTGGATGATTTATGTATGTATGTTAATGAGTTCCCCTTCGC
AGGCATTTCTGCCTCTCCGAAAGGATATACAATAAAGTTGTTTAGAAAAA
ACTCGTTATGTGTTAAGTCCGGAATTCCAAAGTTCTCTTCTATCCCGTTT
GGTTGCTGGAGTCTTTGCGGTCTTTCTTTCCATGCTTCGTCCAGGTTAAC
CCTGAATTGGAACACGGTT
Run BLAST on NCBI

protein sequence of TCONS_00028351-protein

>TCONS_00028351-protein ID=TCONS_00028351-protein|Name=TCONS_00028351-protein|organism=Clytia hemisphaerica|type=polypeptide|length=104bp
RKVKNIRPNVQITNKVLYGKLHQLSSLIQKRRLQLAGHVIRGNEPASKLL
LWQPTFLTKKRGRPHKTLLKVLEQETGLDKGEMVRLAHNRVKWKDMVMSS
LSSG
Run BLAST on NCBI

transcript from alignment at sc0000674:149481..149999

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028351 ID=TCONS_00028351|Name=TCONS_00028351|organism=Clytia hemisphaerica|type=transcript|length=519bp|location=Sequence derived from alignment at sc0000674:149481..149999 (Clytia hemisphaerica)
AACCGTGTTCCAATTCAGGGTTAACCTGGACGAAGCATGGAAAGAAAGAC
CGCAAAGACTCCAGCAACCAAACGGGATAGAAGAGAACTTTGGAATTCCG
GACTTAACACATAACGAGTTTTTTCTAAACAACTTTATTGTATATCCTTT
CGGAGAGGCAGAAATGCCTGCGAAGGGGAACTCATTAACATACATACATA
AATCATCCACTTGAAAGTGATGACATGACCATGTCTTTCCATTTGACCCT
GTTGTGCGCCAAACGAACCATCTCACCTTTGTCAAGTCCAGTCTCTTGTT
CTAAGACTTTGAGTAGTGTCTTGTGTGGACGACCTCTCTTCTTTGTTAAG
AATGTTGGCTGCCAAAGGAGAAGTTTAGATGCCGGCTCGTTTCCTCTGAT
GACGTGACCTGCTAACTGCAATCTTCTTTTCTGGATAAGACTGCTCAATT
GGTGCAGCTTGCCGTACAACACTTTGTTAGTAATTTGGACATTAGGCCgg
atgtttttgacttttctca

Coding sequence (CDS) from alignment at sc0000674:149481..149999

>TCONS_00028351 ID=TCONS_00028351|Name=TCONS_00028351|organism=Clytia hemisphaerica|type=CDS|length=315bp|location=Sequence derived from alignment at sc0000674:149481..149999 (Clytia hemisphaerica)
TCATCCACTTGAAAGTGATGACATGACCATGTCTTTCCATTTGACCCTGT
TGTGCGCCAAACGAACCATCTCACCTTTGTCAAGTCCAGTCTCTTGTTCT
AAGACTTTGAGTAGTGTCTTGTGTGGACGACCTCTCTTCTTTGTTAAGAA
TGTTGGCTGCCAAAGGAGAAGTTTAGATGCCGGCTCGTTTCCTCTGATGA
CGTGACCTGCTAACTGCAATCTTCTTTTCTGGATAAGACTGCTCAATTGG
TGCAGCTTGCCGTACAACACTTTGTTAGTAATTTGGACATTAGGCCggat
gtttttgacttttct
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016065XLOC_016065Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028351-proteinTCONS_00028351-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028351-exon-sc0000674-1491911889:149481..149999TCONS_00028351-exon-sc0000674-1491911889:149481..149999Clytia hemisphaericaexon
TCONS_00028351-exon-sc0000674-1510915933:149481..149999TCONS_00028351-exon-sc0000674-1510915933:149481..149999Clytia hemisphaericaexon
TCONS_00028351-exon-sc0000674-1575043694:149481..149999TCONS_00028351-exon-sc0000674-1575043694:149481..149999Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000674supercontigsc0000674:149481..149999 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.841227	1.20981	1.20283	0.275461	0	0.45381	0.18601	1.00822	0.6812	0.276068	0	0.576369	0.355255	0.132374	0.185306	0.184236	0	0.0369571	0.364971	0.337323	0	0	0	0.14562	0	0.908415	0	0.27345	0.141236	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028351 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top