TCONS_00028328 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028328
Unique NameTCONS_00028328
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length228

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028328 ID=TCONS_00028328|Name=TCONS_00028328|organism=Clytia hemisphaerica|type=transcript|length=228bp
TGAATTtacatattttgtagaataatAATTCTACCCTTTATACCCTTCTA
TACAATATAGACTCTGTTGTGTAGCAATCTACTAATttgccgtaattcta
cagatGTCTGTAGAAATATGAATTTACATATTTTGTAGAATTATAATTCT
ACCCGTAAATCTACAGACATctgtagaaattttaaatttacacCATCTAC
GTACTCTGTAGAATTATGTGTGATAATG
Run BLAST on NCBI

transcript from alignment at sc0000673:135715..135942

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028328 ID=TCONS_00028328|Name=TCONS_00028328|organism=Clytia hemisphaerica|type=transcript|length=228bp|location=Sequence derived from alignment at sc0000673:135715..135942 (Clytia hemisphaerica)
CATTATCACACATAATTCTACAGAGTACGTAGATGgtgtaaatttaaaat
ttctacagATGTCTGTAGATTTACGGGTAGAATTATAATTCTACAAAATA
TGTAAATTCATATTTCTACAGACatctgtagaattacggcaaATTAGTAG
ATTGCTACACAACAGAGTCTATATTGTATAGAAGGGTATAAAGGGTAGAA
TTattattctacaaaatatgtaAATTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016050XLOC_016050Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028328-exon-sc0000673-1491911889:135715..135942TCONS_00028328-exon-sc0000673-1491911889:135715..135942Clytia hemisphaericaexon
TCONS_00028328-exon-sc0000673-1510915933:135715..135942TCONS_00028328-exon-sc0000673-1510915933:135715..135942Clytia hemisphaericaexon
TCONS_00028328-exon-sc0000673-1575043694:135715..135942TCONS_00028328-exon-sc0000673-1575043694:135715..135942Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000673supercontigsc0000673:135715..135942 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0.725276	0.753206	0	0.664537	0	0	0	0	1.05438	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028328 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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