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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028300 ID=TCONS_00028300|Name=TCONS_00028300|organism=Clytia hemisphaerica|type=transcript|length=689bp
aatttttgaaacgatTTTCCGcaatgaaacacataaaagAGGTTCAAAAA
GTGTTCATTTTCAATCATCAGCTGttttgaaacatttgaaaaGATGAAGA
CATTATCAATTCTTTTGATCGTTGGCTTTGCCACATTCGCAGTACTTGCC
CGACCTGCCAAACCCGCTGTACCTAAAAGAATTCAAAAGGAGCTTGAGAA
GGGAATCGTCAAAGAATTATCCAAAGAAGTTGTGAAAAaaatgaaagaaa
aagctcAGCATGACGACGAAGACGATGATGATGCAGTATTGGAAGCTGAA
ACAGACGACGAAGACTTTCATGACGAAATTCTTGATCGCCAATTGGACGC
AGATGCAAAGCCTCTTTTCTTTAGATCGATATGGCGCAGCATCAAGAGTG
CTTTAGGTTGAGTTGAATCGAATAAAATTTATTCTCTTGTATTTAATCAA
ATAGAAATACTCGTGCAACAAtcgaaaatgaaataaattataGCTAAGCA
GGTCAGGATATTTAATCCCATAGATGGGTGCATCTCACCTAAGGGATGGC
AACCTGTTTCCTGGATTGGTGACGATTTGGATATGAATATTTGTATAATG
TTGAAATAATTTAACGAGAATAGAAACAAGAAGCTagtaaaatcttcaaa
tattcAACTTGTACTTCTTTTTGAATTTAACCTTTCCCG Run BLAST on NCBI transcript from alignment at sc0000673:162387..172107+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028300 ID=TCONS_00028300|Name=TCONS_00028300|organism=Clytia hemisphaerica|type=transcript|length=9721bp|location=Sequence derived from alignment at sc0000673:162387..172107+ (Clytia hemisphaerica)
aatttttgaaacgatTTTCCGcaatgaaacacataaaagAGGTTCAAAAA
GTGTTCATTTTCAATCATCAGCTGttttgaaacatttgaaaaGATGAAGA
CATTATCAATTCTTTTGATCGTTGGCTTTGCCACATTCGCAGTACTTGGT
AAGCTCGCAATTTTACTTTGCATCTTCTATAatttattatgaaaaaaact
gagaaaaacTTGAAGGGGCGGACAATATAATCACGAAGAAAGTTTATTAG
CCCTACCCCAGGCAAAGCTACTAGAAAAAGCGTCCCCAGGTACTCTCAAG
ACACCCCCTCTGGAATGTTCGTGATAGAGAGTTAGCCTGAAAACCATCCG
TGATTCTCAAAACATAGATGTGCAGGATCCCAAAAACAGTTAAAGACCTT
GTTCACCGGCAAGGTGGGGGTAATTGCCCCATATTGCCTGGACTATTAAG
ATAATCAAAGCAGGAATGTGGTCAAGTTTTTGTTATCAAAGTCTTCCTTG
ACCAATTAAAAAGATTCGCTTAGAGATCTCAATAATGATTTAATTGACTA
TTATAGTACATTTTCCTTTTTAGCCCGACCTGCCAAACCCGCTGTACCTA
AAAGAATTCAAAAGGAGCTTGAGAAGGGAATCGTCAAAGAATTATCCAAA
GAAGTTGTGAAAAGTAAGTCTTTATTAAACTGTTTCTTAATGGAAGAAAA
GTTGGACTGAATTTTAACCATAACATGTAAGCAAACATCTCTAACACTGC
CTTATCAAGAGCACTTGCTAAAGAATTTGACGATTTCGTCGATTATATTC
AGCAAACCTTAAATATACAGTTGACGTTCTCTAATTCAAGGTTCTACTTT
TCCATATGCATCATTATTCAATCATAATATTGAAAGTTTGacaggcgaga
ccaatttaatttgggcccgaccgaccctatttttgctaaaatcaaaaaaa
taataatattgaatttccactacaatatattttacacactagttatttgt
aagaaagatttgtaagaaaatttgaataaagctgaaaattaattcaagaa
attgaaaaatttagaaaatccagCATTAAGATACACACATACACTAAGAT
TTAATCAtgatcttcatcaaagataaaaaaagtgaattcttgaaccagat
attttttggaaaacattttcggtactttaaCAACCCtgatgaatgaaaaa
tttatttttattttaccgaccgacagacccatattttgctaacgatctgc
ccgtagaacaacaaattaaattggtctcgccacaagaaactctcgtaaac
gacgctctactattccaTACGCTCCctcattcgatgaaaatccctttgaa
aattgaatcagagagcgtcaactgtagcttaaaatgtaaaaaatcatGTT
GAAGTAACAATATAATATTCTCTTTcagaattaaaagaaaaagcTCAGCA
TGACGACGAAGACGATGATGATGCAGTATTGGGTAAGATCTATTTTAGAT
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNcttataaaaaaaacgtttagaaaccaaaatttcat
gctcttgaaataatctttcatattcaagacttcgtgagcaaaaaaaacat
ctatctcattaaaaaattaagtaatttggctaagaacattgatgtatgct
tattaaatagtgattcttatagataaacatgcgttttttgagccaacaaa
atttttttgaaaaaatctgcttgagccatcttttacctatgatggtaccc
tactttcatacaaaaaatcagaaaaaaattaatgatccaatttttcagaa
agtctaaaaaaccagttttttagccgttttttggcccaaatttgccccaa
aattttttttttcgaaaatcgggctccgtcacattttggccaccaccatt
ttgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgttgtaccaaaaatcaa
aagattcctatgattcaatcctgagaaaagttggtaacagacgaacgaac
gaacgaacggacgaacggacggacggacgaacaaacccaggttaatttat
aggacctccaccggggtaggtccaaaaagctctTTGTTCAGCTAGGGAAA
ACGATCCTTCCATCGTACGGACAAAATTGTCTGCTAATGGCTAAAATTAA
AGAACTAAACGAGTCATTGTTACttattacttttttaaattaaactttag
tggcttcaaattattgataggcccaattgtaggtCCCTAGATATtcgcct
cgttttggcgaaaaactcgtccctaggccccaaaaatcaaaatttttgaa
aaatgaaaaatatgccCCAGATATTtgcccaaggaacaagtgtgccaaat
ttcagccaaatccgacaatttttgcagtttccaggctgccccaaagtttt
agcctggttttggcaaaaaaatcgtccccaggccccaaaaatcaaaattt
ttgaaaaatgaaaaaacacccccagatattcacccaaggaacaaatgtgc
caaatttctgccaaatctgacaatttttgaagtctccaatattttgggac
atacacacacacagacattcttAGATTCTAGCTTAACTGAAGTTATGAGA
ATAGGAGAAataaactacataagaacatacATAGGCTTTGATGACcgaaa
tgctaagaacaagttaagaacattttaagggctTTGTTGATTCTAAAACA
CCTAATTCCTTGGTTAAGTTGACATAAATACTCACAAActggttaaaata
agaacatgttaagaacatttttcagcTTAAATCTCAGAAAGTTGGTTAAG
TTAAAGTCCTTTTTTAGATGTTTGTTAATGGAAAATAAATTAGATCGAAA
AAAGAGGTTGAAATTCAATCAAGACCTATAACGAGGAAACCGTATGAACA
AAGTCGTTCCATAAACAATCTTGTCTTCTCTTTCAGAAGCTGAAACAGAC
GACGAAGACTTTGATGACGAAATTCTAGATCGCCAATTGGACGCAGATGC
AAAGCCTCTCTTCTTTGGATCGATCCTTTCGTCTATATTTGGTTGAATTG
AATCGAATTTAACATAATTTATTCCTCTGTATTTTAATAAAGAGGTTACA
TGTAGCAAAAGAggataaaataaattttctaagCAGGCCCCGGTAATCTA
TAGATACAAACATCATCTCACCTAAGGGATGGCAACCTGTTTCCTGGACT
GACGAGGACTTGGATATGAATATTTATCTTATGTTGAAATAATTTAACGA
ACGtaaatataaacaaagaaactagaaaaaaacttttacttgtacttttt
cctgtgaaaatttttaacacgtaaaatttttttgacaattgtgaaaattt
tcaacagtaCCAAAGCTTGTAACTTGAGAGTTAGACAATAGTTTTGTTAG
AATAGGTATTTTTATACTCCTTTGAAAGCATTCTCTTTAACCAACTTCGA
GATAGCCCATTACCTAGGAAAAACCTCCATATAGGAAAGAATTGGCAAAT
TAGCCCAGCGGTAAACTAGCCGATAGTGAAGAAGAATTTGATTTGAGAGC
AAAGTCTTAATAGTTGCATCTTTTTTTCACCATCCATAAAGAAAATTTCT
CATGTCTCAAAGAAAATAATCggcttaaaaaaacagttcaACTTGTTGTG
ACTGGCCTGAATTTTTGGTGACGATAAAAAGCAGTCATGTAGGTCCAACT
TGCAAAAGGCAATCGGTTGCCTACTTCACTGTCTTCTTCTTTAGTTCTCT
TTCCAAGAAACGTCATTTCTCTTCAACCAAATCCAGTGACTTGCTTTCTC
GGTTGCCTCTTCATTCTTTTATCGACTTGTTGATCATGTGTTTAAGGAGG
CCGATGTTTATGAGCCACTTCTTCAACCTATTGCCGACAAAACTTCCGCA
GCTAACTTCTACTGGGTGATGAGTTGCGTTTCTCCCTGCATCTTCGCACT
TCTCTAGTACTAATTTTagtacgcatgcgtgttacaatgcaggattcttt
agaagAACAGACTGAGTATAATAAAGTATAAGTTGCATCCATAGTATTTG
CGTCGACGGAGAAAATCTTTGCTTTTTAACCCACTCGTTCAGCTTAACTG
GCTATCTTGGTGTAAACTACTGCAACCTCTTTTCCGCCTTTCCCAAAGTT
TAgagtacacactttttttataagaacatactttataagaatattcatga
tgaaaatagccaaaaagaTTTTGAGTATTACCAACCTAAGAATGTAATTT
TTAGAGCATCTTAAACTCaaaattgccaattattcccCAGTTAAGCTAAA
TTCAAGTTCACAAAAATGCTTTAAATTTGGATTAAATTTAGATTcttcct
aacctaagaataccgtaagaatattttagggtgattttcgccaaaatgtt
aagaatatccatgatggaatgaaaaaaacaccattcttaaaataaaaacc
gTGACAGTGCTTAATTGGAATTCTTGTTGACAGGAAGATTGACATAAATA
ATGCGATTTTTGATCATAGAAAATTTTATTGTACTTTTAGTACGTTCTAA
TTGTGTAAAAATTGTGCACAAAGGCGTGCAAGCACAACtgtagtttaggg
gtcaaaaatggatcTAAATCTCAGACCTAAAAAATTGGCACccgtttgtg
tattttacagaccagaatagattCCCAGGATTAAatgaatttgacatttt
ttctgCACTATTTGACCGAGTTCACTCATTATCTAAGTGGGACTTAAAAG
TTTTCACCAGGTTTTTCACCGGGAGAATCTGATCGGGTGGTCACTGATAA
AAAGGTGTATAGGCGTAAAAGGGATATCATATCCTCGTTCTGCTCTAAAG
CAGGCGTCTTCAAATTGAATTCTATGCTTCTTCAAAAACAGCAAAGATTC
TTTGGACATCACCATAGAATTGACAGAGTGAAGGCTGAGATCTTCAANAT
TCATAGAGGTATCAACCAAGATAATATTGAACAGGGAAATTCATAGAGGT
ATCAACTAAGATAATATTGAACAGGAAAATTCATAGAGGTAATAACACTA
AGATAATTGAACAGGAAATTTCATACGCAGAAAGGACAAAAATCGCCTGC
TATATTAGTATCAAAGAAGCTTGACCAAACAAGGGCCAGGTGTTCGAGTA
TAGGACTCTTTCTAAAGTTTTCGTATTGTTGGCAACCCAACAGAAAAGAA
AATTACGAATATGAAACGATCTTATGGGCGCCTTctttgcccgggggggg
ggCAAGATGGGTTACGGGGATGCTCCGCTGGTCAGGGTACCTTTTTTAAC
GTCcacgagtcccaggtagggtcgctaaaacaccaaaatagaaaaatcag
tctcccgtagggtgcctatttttggaaattttggggtaaagtagaaaatt
tgacaacattttgaaattttagtaacattcagggtcacttttttcgcaaa
tttcgagtcccacgtagggtccatttttcgaacctccgcggagcaccccc
gtcggtcgacaagggtagtggGGGACCGCGGGCTTCTTTGGACTTTCGAA
ATCACATTAGGATCTGTTGCAAAATTAAGGTACATATCTGATGGACAAAT
TGAGggtattgtattgtatcgtATTGTTTCTTTATTTCACGTTGGCTTTA
AGAATTAACAGCTGGGGTTAAGAAAATTATAATGAAATAACANCTATTTC
ACGTTggctttaaaaaataatagctGGGGTTAAGAAAATTACAATGAAAT
AACAAATTCTAATAAACACCAACCCCTAATAGATTTTTAATTACGGCATA
ACCTGCAGTTGCagggaatttcattttcttttgtgaattacttaagtaat
ttttcaaaatcttcagaAGAAGAACTCCCACGTGAAACTTGgatttcgtt
ttttttagaGATTTGAAGACCTCATGTATAGAGCAATTCTTCCTTATAAA
CTTTAAGCACCTTCCACCTTTCCAAAGGCTTTTTAAATGCCTCTCGTATG
CAAAACAAAATTAGACTGAAATATTGCTTTGCCTGGCGTCCACCTGGTTA
AGTAGAATTTTCATGTCGGGTGGGTAAAAATGCAACGATTTTTGTAACAG
ACCTCTTAACCCATTCCGTGCCCATGTCAAGTTTATGTGACATtgctaaa
tgtttttttttaatcaattgaGCAGCAGCACAAAAAAAAACTGGGCAAAA
ATCTATAAGTCATGTCCAGTATATTTGACATTGGGCCTGGCGGCTAACAA
CGGGTGAGAATAAATATACACGCCATCCGGCTgctcaaaatacttttttc
attttctcccgCCGAAAACAACTGCATCGCctcgaaaatttttgtaaatt
ttctttttgccatCCCCCCCTGTGCAAGGAAAAGGTTAAGGGTTTCAAAA
TACATAAAATCTAATTCAGCAcacatccaaaaaaaaaatccgtcTATTTT
ATCTCCAACATGCCTTAATTTTAAGTAAAGTTGTCCAAATTACGGTTACA
ATATTGTCCTTGATTTCAGCTATGAGCCCCCCTAAAAACCCAAATGGCTA
AAGTCTGGCGGAAATACCTGCCATCCAAAATAACTATTATACCCCTGGGG
CTTCATCAACTTGCTTTATTTCCCACTATTTTACTATCATCATAtaccca
actggcacacaacgttgttttaacgtttaataacgttatttggacgttat
gaatgtcacatagACGTTCTTTTGACGTTGCGTGCCGTCTGGGTAAACAG
GGAATCTTTTTTATGAAGTGTAAATCGACCTCTGGAGAACTTGAACTCAT
ACCCCATACTCGGCTTCTCAGGAAAATCTTTTAgaagaataaaatcaaat
aattcCTTGTTTAAACAGATTAATTTGAATTCAATTTTCCTTTGAGGAAG
TGAAAAANTTAACCTTCTGGAAAACTTTAACTTGTTCCTCGTGATTCGCT
TCCCTGAAAAACCTTGCAGGAATAACATATTCAAATGATTCCTTATTTAA
ACagattgattttgaaaaaatttcctttgaggaaatcaaaaataccaaag
taggaaaatttttgaaacgatTTTCCGcaatgaaacacataaaagAGGTT
CAAAAACTGTGCATTTTCATTCATCAGCTGTTTTCAGAGCATTTGAAAAG
ATGAAGACATTATCAATTCTTTTGATCGTTGGCTTTGCCACATTCGCAGT
ACTTGGTAAGCTCAATTTGACTTTGAATCTTATATTCATAATCTATTTGG
TAAGGAGAAAATCAGAGGAACAATCCTTTCTACAAATTCTCCTCTGACAA
CCACAGTAAAACTTTGACCGAGTTTTGGTGAATGTGACAAGAGTCTTTAA
CTTAAGATCTTTATTTGAACAACTTAAAAATACCAAACATAGATTGCCAG
AAATGTTTAACAAAACCTCCAGCACGTGCACATTCTGCATAATCTATGGT
GGAAAACTTGATCTTTCTGGTTGATTGTATACATTGGGGAACGGCGACCA
CAACTATACCCATTCCGTTAAATACGCCCTTGATTTAGAACAAAGATTTT
CCTGTGTAGCGGAAAAAGTAGGCCGATACTAATAAGGTTCGCTTAGAGAT
CTAAACAAACCAACACTAATgaactttttttgcttattttccttttcagc
tCAACCGGCCCGACCCGCTGTACCTAAAAGAATTCAAAAGGAACTTGAGA
AGGGAATCGTTAAAGAATTATCCAAAGAAGTTGTGAAAAGTAAGTCCTTT
TTAAACTGTTTCTTAATGGAAGAGAAGTTCGACTAAAATTTAACCATAAC
CTATAAACAAACATCTCTAACACTACCTTATCAAGAGCACTTGCTAAAGA
ATTTAACGATTTCGTCGATTATAATTCAGCAAACCTTAAATATACAGTTG
ACGTTCTCTAATCCGAGGTTCTACTTTTCAATATACACCATTATTCAATC
ataatattgaaaatttgacaagAAACTCTCGTAAACGACGCTCTTCTATT
CGTTAAAAATCCCTTTAAAATCGAATCAGAGAGCGTCAAGTagtttaaaa
tgtaaaaatcataTTCACGTACCAatcaggctcggatacagagggaggct
ataaccaatggaggagagtgctctttattatcgtattaccttatatggaa
actaattactctccatgaataagatagcctacctcctgtatccgaccctg
ccaatataatattctctttcagaaatgaaagaaaaagctcAGCATGACGA
CGAAGACGATGATGATGCAGTATTGGGTAAGATCTATTTTACATTGCATC
TTGCATGTGCTTTGTATCGGATAAGCTCTTTGTTTAGCTAGGGAAAACGA
TCCTTCTATCCTACAGACAAAGTTGTCTGCTAAACTTAAGAACGAGCCAT
TATTActtaataccttaagggaagaaatttttgcagaaCAAATATTCGCG
GTTATTCGACGAATCGGCGAAATtgaattccgcgaaacacgaatattttc
agaattagaaaaattatccttaaaatgtgttttcagGGCAAAAAAAGCCA
TATTTTAGACAAAAAATTCTCTTataccgcgaaattaaatttcgccaaac
ttccgaattttgagctgtgaaccggaaaattaaattctgcgaaaatttct
tcccacgAAAATTTTATCCCTTAAAGTACACTTTTTTAATAGGGAGAATA
AACTATATATGAACATataggcttcgatgaccaaaatgctaagaacaagt
taagaacattttaaggctttgtggactctaaaacacctgattccTTGGTT
AAATTGACATAAATACTCACAAACTGGTTAAAAGatagaacatgttaaaa
acatttttcagctTAAATCTCAGAAAGTTGGTTAAGTTAAAGTCCTCGTT
TTAAGTGTTTCTTAATGGAAAATAAATTAGATCGAAAAAAGAGGTTGAAA
TTCAATCAAGACCTTATAACGAGGAAACCGTATGAACAAAGTCGTTCCAT
AAACAATCTTGTCTTCTCTTTCAGAAGCTGAAACAGACGACGAAGACTTT
CATGACGAAATTCTTGATCGCCAATTGGACGCAGATGCAAAGCCTCTTTT
CTTTAGATCGATATGGCGCAGCATCAAGAGTGCTTTAGGTTGAGTTGAAT
CGAATAAAATTTATTCTCTTGTATTTAATCAAATAGAAATACTCGTGCAA
CAAtcgaaaatgaaataaattataGCTAAGCAGGTCAGGATATTTAATCC
CATAGATGGGTGCATCTCACCTAAGGGATGGCAACCTGTTTCCTGGATTG
GTGACGATTTGGATATGAATATTTGTATAATGTTGAAATAATTTAACGAG
AATAGAAACAAGAAGCTagtaaaatcttcaaatattcAACTTGTACTTCT
TTTTGAATTTAACCTTTCCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028300-exon-sc0000673-1491911889:162387..162534 | TCONS_00028300-exon-sc0000673-1491911889:162387..162534 | Clytia hemisphaerica | exon |
| TCONS_00028300-exon-sc0000673-1510915933:162387..162534 | TCONS_00028300-exon-sc0000673-1510915933:162387..162534 | Clytia hemisphaerica | exon |
| TCONS_00028300-exon-sc0000673-1575043694:162387..162534 | TCONS_00028300-exon-sc0000673-1575043694:162387..162534 | Clytia hemisphaerica | exon |
| TCONS_00028300-exon-sc0000673-1491911889:162960..163049 | TCONS_00028300-exon-sc0000673-1491911889:162960..163049 | Clytia hemisphaerica | exon |
| TCONS_00028300-exon-sc0000673-1510915933:162960..163049 | TCONS_00028300-exon-sc0000673-1510915933:162960..163049 | Clytia hemisphaerica | exon |
| TCONS_00028300-exon-sc0000673-1575043694:162960..163049 | TCONS_00028300-exon-sc0000673-1575043694:162960..163049 | Clytia hemisphaerica | exon |
| TCONS_00028300-exon-sc0000673-1491911889:170909..170962 | TCONS_00028300-exon-sc0000673-1491911889:170909..170962 | Clytia hemisphaerica | exon |
| TCONS_00028300-exon-sc0000673-1510915933:170909..170962 | TCONS_00028300-exon-sc0000673-1510915933:170909..170962 | Clytia hemisphaerica | exon |
| TCONS_00028300-exon-sc0000673-1575043694:170909..170962 | TCONS_00028300-exon-sc0000673-1575043694:170909..170962 | Clytia hemisphaerica | exon |
| TCONS_00028300-exon-sc0000673-1491911889:171711..172107 | TCONS_00028300-exon-sc0000673-1491911889:171711..172107 | Clytia hemisphaerica | exon |
| TCONS_00028300-exon-sc0000673-1510915933:171711..172107 | TCONS_00028300-exon-sc0000673-1510915933:171711..172107 | Clytia hemisphaerica | exon |
| TCONS_00028300-exon-sc0000673-1575043694:171711..172107 | TCONS_00028300-exon-sc0000673-1575043694:171711..172107 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000673 | supercontig | sc0000673:162387..172107 + |
Blast
The following BLAST results are available for this feature:
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