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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028299 ID=TCONS_00028299|Name=TCONS_00028299|organism=Clytia hemisphaerica|type=transcript|length=624bp
aaatttttgaaacgatTTTCCGcaatgaaacacataaaagAGGTTCAAAA
AGTGTTCATTTTCAATCATCAGCTGttttgaaacatttgaaaaGATGAAG
ACATTATCAATTCTTTTGATCGTTGGCTTTGCCACATTCGCAGTACTTGC
CCGACCTGCCAAACCCGCTGTACCTAAAAGAATTCAAAAGGAGCTTGAGA
AGGGAATCGTCAAAGAATTATCCAAAGAAGTTGTGAAAAaattaaaagaa
aaagcTCAGCATGACGACGAAGACGATGATGATGCAGTATTGGAAGCTGA
AACAGACGACGAAGACTTTGATGACGAAATTCTAGATCGCCAATTGGACG
CAGATGCAAAGCCTCTCTTCTTTGGATCGATCCTTTCGTCTATATTTGGT
TGAATTGAATCGAATTTAACATAATTTATTCCTCTGTATTTTAATAAAGA
GGTTACATGTAGCAAAAGAggataaaataaattttctaagCAGGCCCCGG
TAATCTATAGATACAAACATCATCTCACCTAAGGGATGGCAACCTGTTTC
CTGGACTGACGAGGACTTGGATATGAATATTTATCTTATGTTGAAATAAT
TTAACGAACGtaaatataaacaaa Run BLAST on NCBI transcript from alignment at sc0000673:162386..165953+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028299 ID=TCONS_00028299|Name=TCONS_00028299|organism=Clytia hemisphaerica|type=transcript|length=3568bp|location=Sequence derived from alignment at sc0000673:162386..165953+ (Clytia hemisphaerica)
aaatttttgaaacgatTTTCCGcaatgaaacacataaaagAGGTTCAAAA
AGTGTTCATTTTCAATCATCAGCTGttttgaaacatttgaaaaGATGAAG
ACATTATCAATTCTTTTGATCGTTGGCTTTGCCACATTCGCAGTACTTGG
TAAGCTCGCAATTTTACTTTGCATCTTCTATAatttattatgaaaaaaac
tgagaaaaacTTGAAGGGGCGGACAATATAATCACGAAGAAAGTTTATTA
GCCCTACCCCAGGCAAAGCTACTAGAAAAAGCGTCCCCAGGTACTCTCAA
GACACCCCCTCTGGAATGTTCGTGATAGAGAGTTAGCCTGAAAACCATCC
GTGATTCTCAAAACATAGATGTGCAGGATCCCAAAAACAGTTAAAGACCT
TGTTCACCGGCAAGGTGGGGGTAATTGCCCCATATTGCCTGGACTATTAA
GATAATCAAAGCAGGAATGTGGTCAAGTTTTTGTTATCAAAGTCTTCCTT
GACCAATTAAAAAGATTCGCTTAGAGATCTCAATAATGATTTAATTGACT
ATTATAGTACATTTTCCTTTTTAGCCCGACCTGCCAAACCCGCTGTACCT
AAAAGAATTCAAAAGGAGCTTGAGAAGGGAATCGTCAAAGAATTATCCAA
AGAAGTTGTGAAAAGTAAGTCTTTATTAAACTGTTTCTTAATGGAAGAAA
AGTTGGACTGAATTTTAACCATAACATGTAAGCAAACATCTCTAACACTG
CCTTATCAAGAGCACTTGCTAAAGAATTTGACGATTTCGTCGATTATATT
CAGCAAACCTTAAATATACAGTTGACGTTCTCTAATTCAAGGTTCTACTT
TTCCATATGCATCATTATTCAATCATAATATTGAAAGTTTGacaggcgag
accaatttaatttgggcccgaccgaccctatttttgctaaaatcaaaaaa
ataataatattgaatttccactacaatatattttacacactagttatttg
taagaaagatttgtaagaaaatttgaataaagctgaaaattaattcaaga
aattgaaaaatttagaaaatccagCATTAAGATACACACATACACTAAGA
TTTAATCAtgatcttcatcaaagataaaaaaagtgaattcttgaaccaga
tattttttggaaaacattttcggtactttaaCAACCCtgatgaatgaaaa
atttatttttattttaccgaccgacagacccatattttgctaacgatctg
cccgtagaacaacaaattaaattggtctcgccacaagaaactctcgtaaa
cgacgctctactattccaTACGCTCCctcattcgatgaaaatccctttga
aaattgaatcagagagcgtcaactgtagcttaaaatgtaaaaaatcatGT
TGAAGTAACAATATAATATTCTCTTTcagaattaaaagaaaaagcTCAGC
ATGACGACGAAGACGATGATGATGCAGTATTGGGTAAGATCTATTTTAGA
TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNcttataaaaaaaacgtttagaaaccaaaatttca
tgctcttgaaataatctttcatattcaagacttcgtgagcaaaaaaaaca
tctatctcattaaaaaattaagtaatttggctaagaacattgatgtatgc
ttattaaatagtgattcttatagataaacatgcgttttttgagccaacaa
aatttttttgaaaaaatctgcttgagccatcttttacctatgatggtacc
ctactttcatacaaaaaatcagaaaaaaattaatgatccaatttttcaga
aagtctaaaaaaccagttttttagccgttttttggcccaaatttgcccca
aaattttttttttcgaaaatcgggctccgtcacattttggccaccaccat
tttgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgttgtaccaaaaatca
aaagattcctatgattcaatcctgagaaaagttggtaacagacgaacgaa
cgaacgaacggacgaacggacggacggacgaacaaacccaggttaattta
taggacctccaccggggtaggtccaaaaagctctTTGTTCAGCTAGGGAA
AACGATCCTTCCATCGTACGGACAAAATTGTCTGCTAATGGCTAAAATTA
AAGAACTAAACGAGTCATTGTTACttattacttttttaaattaaacttta
gtggcttcaaattattgataggcccaattgtaggtCCCTAGATATtcgcc
tcgttttggcgaaaaactcgtccctaggccccaaaaatcaaaatttttga
aaaatgaaaaatatgccCCAGATATTtgcccaaggaacaagtgtgccaaa
tttcagccaaatccgacaatttttgcagtttccaggctgccccaaagttt
tagcctggttttggcaaaaaaatcgtccccaggccccaaaaatcaaaatt
tttgaaaaatgaaaaaacacccccagatattcacccaaggaacaaatgtg
ccaaatttctgccaaatctgacaatttttgaagtctccaatattttggga
catacacacacacagacattcttAGATTCTAGCTTAACTGAAGTTATGAG
AATAGGAGAAataaactacataagaacatacATAGGCTTTGATGACcgaa
atgctaagaacaagttaagaacattttaagggctTTGTTGATTCTAAAAC
ACCTAATTCCTTGGTTAAGTTGACATAAATACTCACAAActggttaaaat
aagaacatgttaagaacatttttcagcTTAAATCTCAGAAAGTTGGTTAA
GTTAAAGTCCTTTTTTAGATGTTTGTTAATGGAAAATAAATTAGATCGAA
AAAAGAGGTTGAAATTCAATCAAGACCTATAACGAGGAAACCGTATGAAC
AAAGTCGTTCCATAAACAATCTTGTCTTCTCTTTCAGAAGCTGAAACAGA
CGACGAAGACTTTGATGACGAAATTCTAGATCGCCAATTGGACGCAGATG
CAAAGCCTCTCTTCTTTGGATCGATCCTTTCGTCTATATTTGGTTGAATT
GAATCGAATTTAACATAATTTATTCCTCTGTATTTTAATAAAGAGGTTAC
ATGTAGCAAAAGAggataaaataaattttctaagCAGGCCCCGGTAATCT
ATAGATACAAACATCATCTCACCTAAGGGATGGCAACCTGTTTCCTGGAC
TGACGAGGACTTGGATATGAATATTTATCTTATGTTGAAATAATTTAACG
AACGtaaatataaacaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028299-exon-sc0000673-1491911889:162386..162534 | TCONS_00028299-exon-sc0000673-1491911889:162386..162534 | Clytia hemisphaerica | exon |
| TCONS_00028299-exon-sc0000673-1510915933:162386..162534 | TCONS_00028299-exon-sc0000673-1510915933:162386..162534 | Clytia hemisphaerica | exon |
| TCONS_00028299-exon-sc0000673-1575043694:162386..162534 | TCONS_00028299-exon-sc0000673-1575043694:162386..162534 | Clytia hemisphaerica | exon |
| TCONS_00028299-exon-sc0000673-1491911889:162960..163049 | TCONS_00028299-exon-sc0000673-1491911889:162960..163049 | Clytia hemisphaerica | exon |
| TCONS_00028299-exon-sc0000673-1510915933:162960..163049 | TCONS_00028299-exon-sc0000673-1510915933:162960..163049 | Clytia hemisphaerica | exon |
| TCONS_00028299-exon-sc0000673-1575043694:162960..163049 | TCONS_00028299-exon-sc0000673-1575043694:162960..163049 | Clytia hemisphaerica | exon |
| TCONS_00028299-exon-sc0000673-1491911889:163815..163868 | TCONS_00028299-exon-sc0000673-1491911889:163815..163868 | Clytia hemisphaerica | exon |
| TCONS_00028299-exon-sc0000673-1510915933:163815..163868 | TCONS_00028299-exon-sc0000673-1510915933:163815..163868 | Clytia hemisphaerica | exon |
| TCONS_00028299-exon-sc0000673-1575043694:163815..163868 | TCONS_00028299-exon-sc0000673-1575043694:163815..163868 | Clytia hemisphaerica | exon |
| TCONS_00028299-exon-sc0000673-1491911889:165623..165953 | TCONS_00028299-exon-sc0000673-1491911889:165623..165953 | Clytia hemisphaerica | exon |
| TCONS_00028299-exon-sc0000673-1510915933:165623..165953 | TCONS_00028299-exon-sc0000673-1510915933:165623..165953 | Clytia hemisphaerica | exon |
| TCONS_00028299-exon-sc0000673-1575043694:165623..165953 | TCONS_00028299-exon-sc0000673-1575043694:165623..165953 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000673 | supercontig | sc0000673:162386..165953 + |
Blast
The following BLAST results are available for this feature:
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