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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028293 ID=TCONS_00028293|Name=TCONS_00028293|organism=Clytia hemisphaerica|type=transcript|length=2669bp
ACACAGAATAAAATAGTGCTGGTGGGTATGTAAAGTTTCatcttttatgt
tttgatttttgttgagGAAGGAAGCAATTGACAGCGTTGTGAAGATCTAA
ACTTACTAGCAAAACAAAGAATTACAAAAATGCTTCTACTATTTCTGGTT
GGTTTATCATCAGTTCCGGTTCAGCCTAGTTGTAACATATATAGAGGACC
TGAGGGGAGTCCAGTTTGTGTCAAAATCCAAGGATACAATCAACCCCAAT
GGGCCAGTTGTTTAAGAAACCAATATATTCTACTAAAGTCTAGCCATCGT
CATGCATGTAGGAAATATTTGGGAGTTATCGACCCAACATTTTGCTATTA
CCAATGCCAATTAGAAGTATATAGTAAGGAAACTGGTGATATCGGAGAGA
AATGTCGATGTCAATTGGATGGAAAAGTTCCAGATGAAACATTACCAAGC
TGGTGCTACAGCCCATCTGGCGATAGTTGCAATTGGTATAGAGATTGTTT
GCACAAATACCAAGATTGTAGCAATACCAATGCCTTCTACGCTATCGAAT
ATGGAGAGCATTTTTGCCAAGCGTACGATAAAAGCAGATCGAGATTCTCT
TACCGTGGACAACAATGGGTTGACGCAGCACGGAAATGTTTACAAGTTGC
CTTAGTACCGATGTTACGTTGGAACAATAAACCTAGTTGCGCGGAGGTAG
AACAAGAAGCATTTGACTCTCACAGTTGTTGCTATCTAGCAGGTCCATCA
TGTGTTAAAGCTGGGACACCTTCCATATGTGATATCAGTGTTAGTGATTG
GGGAATTGTTTTCTCCACAATCAAAGAATCGATCATCCCATTCTCCAAGC
ATGGTGCACCATGGGAAACTTTGAAAGGCCTGGTAACCACTATGGCTGGA
TGTACAAATGATTATGGAACTGACTTCATTACTTGGATAGAGCTCAAACT
TTCAAATGTAGATGACAGTTTTCGGACGTTGTTGGACAGCAATGATTATG
GCGAAAAAAGCAAAGCCAAAGATCTCATTTACCAACTCACCAATGAATTG
GCTGAACAAATGGAGTGGAGAAAAAGTGGACTCTTTTGGTTTGGAGGGCT
CAAAGAATCACTGAACGTCGCCAGAAAACGAAGATCAGCTCATCAAGATG
CAGCGGTTAAGATCTCCCTGTGGTCCAACCCTGGTGAAGATCGTCCAATC
CTTCTCAATCGAACTGTCCTTAATCTTCTTGATAAGATAGAAAAAGGAGA
gatcaaaatcaaaagtaaGCAATTGAAAGAGAGTTTTGAGATCGCCTCTG
CCACTAGCTGTCTGGATGAAAATTGCACAACAGTTAGGAAGAATGTAACA
GCACCTTTAACGACCACCCCTAGTACTACAACAACCACTACTACGACCAC
CCCTAGTACTACAACGACCATCCCAGCTGCTGAGCCTACTTCGAAGACAC
AGAAAGGAAACTACAAAGGCAGTGGAATGAGCTTGTCACCCATAGCAACA
GTAGCATACATTGCGATCCTTGCTATTGCATTTTGGGTAATCGGGTAGCA
AGCCTTAAGCACACAATGAGCAATAAACTTTTAATCTTCCTGCAGCGGCA
TACTTTATGgagaaaaataaattaactGACTATTTTATTGGGCTAAAAAC
TTCCCCGAAATAAATTTCATCCGGTTTATTTGACCGTGTTGATGACAAAA
TTTTTGGTTCGATAACTGAGTGTTCCCCGACTAGTTTAACCCTATATATA
AGTTATCACCAGTaccgtagacaggaggggcacAACGTTTGCGTAGGAga
gtagatttttatgacatagtaattatctttttatattacaaatagataat
tacagtgtcatgaaaaatctgctctcctacacaaacttttcgcccctcct
gtctacgctactgatcACCATGttattgtaattttcaaaatacacagcaa
atattattttcaaaataattttttcactgtaattttttttattcaaattt
taagctTTCTACCTATAACTCAATTTTCGAGTATACATCACCCAGAATAA
ACAGTACGTTTATTCATCAAAGCAAAAAAGAGATTTTTACAAACCTTGGG
TTGACATCTTGAAGACAACAAAATGAGACAATGaagcatttcaatttttt
caggtTCGATATATCTAGAACAGAAAgggatatttcaaaatttattgcaa
atttatatTTTAAGTTTATTTACTTTACTTATTTTTAAGTCATGGGATAG
AATTTCTCCGCCAATTGATAATAATTCTGTAGTTTTAAACAAAATCTTGG
AAAattaatttgagaaaatgccTGATCTATTTTGATTCTGATGTGAAAAG
ATTTatgcttttataagaatttttcttGTGTAAGGAACCCTTTGCTTACA
ATATCTATGAAGCAGTCTGAAACGTGAGATAAAACGCCCcgtaaaaatta
tataaattttttgtagccttagaattaaaatttgtattttatttaaaCAA
TTTTCTCAATATGTAAAACTTTATACCGagtaattaattaattaataccG
AGTCGTCAAATAATAACTCTTCATCTTCCTGATAAAATCGTTACCATATT
ACATTTaaaaggggcgtttatttaagGGGCGTTCAAATGAAGGGGGTTGT
TTATAGATTTATAACCAAG Run BLAST on NCBI protein sequence of TCONS_00028293-protein >TCONS_00028293-protein ID=TCONS_00028293-protein|Name=TCONS_00028293-protein|organism=Clytia hemisphaerica|type=polypeptide|length=472bp
MLLLFLVGLSSVPVQPSCNIYRGPEGSPVCVKIQGYNQPQWASCLRNQYI
LLKSSHRHACRKYLGVIDPTFCYYQCQLEVYSKETGDIGEKCRCQLDGKV
PDETLPSWCYSPSGDSCNWYRDCLHKYQDCSNTNAFYAIEYGEHFCQAYD
KSRSRFSYRGQQWVDAARKCLQVALVPMLRWNNKPSCAEVEQEAFDSHSC
CYLAGPSCVKAGTPSICDISVSDWGIVFSTIKESIIPFSKHGAPWETLKG
LVTTMAGCTNDYGTDFITWIELKLSNVDDSFRTLLDSNDYGEKSKAKDLI
YQLTNELAEQMEWRKSGLFWFGGLKESLNVARKRRSAHQDAAVKISLWSN
PGEDRPILLNRTVLNLLDKIEKGEIKIKSKQLKESFEIASATSCLDENCT
TVRKNVTAPLTTTPSTTTTTTTTTPSTTTTIPAAEPTSKTQKGNYKGSGM
SLSPIATVAYIAILAIAFWVIG Run BLAST on NCBI transcript from alignment at sc0000673:108965..111984+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028293 ID=TCONS_00028293|Name=TCONS_00028293|organism=Clytia hemisphaerica|type=transcript|length=3020bp|location=Sequence derived from alignment at sc0000673:108965..111984+ (Clytia hemisphaerica)
ACACAGAATAAAATAGTGCTGGTGGGTATGTAAAGTTTCatcttttatgt
tttgatttttgttgagGAAGGAAGCAATTGACAGCGTTGTGAAGATCTAA
ACTTACTAGCAAAACAAAGGtgcgaaaatatttttaatcagTTTCAAGGA
CCTGACGCTTAGTatagttttttttcacaaaattataCTCCCTCACTTTT
GCCGAATTATTTGAAAAGTCGACATTGtgtttgattttaatgttttctaA
AAATACACGAACGTAACCATTTCTAGAGCTCAAGAGAACTGGAGTACCAA
AAATTATTTATCTAGTTTTTTTGGGAACAAACTTATCTAAAAATTTACAG
TAAACTCTACAGCTTGAAGTATTATGACTGTTACTTTTAACTCAAAAGAG
TTCTGAATACCGGATTCAAAATGTAAAGAAAAACTTCAGCAATGCTTTTT
TTTTCTCACCAATTTTCTAGAATTACAAAAATGCTTCTACTATTTCTGGT
TGGTTTATCATCAGTTCCGGTTCAGCCTAGTTGTAACATATATAGAGGAC
CTGAGGGGAGTCCAGTTTGTGTCAAAATCCAAGGATACAATCAACCCCAA
TGGGCCAGTTGTTTAAGAAACCAATATATTCTACTAAAGTCTAGCCATCG
TCATGCATGTAGGAAATATTTGGGAGTTATCGACCCAACATTTTGCTATT
ACCAATGCCAATTAGAAGTATATAGTAAGGAAACTGGTGATATCGGAGAG
AAATGTCGATGTCAATTGGATGGAAAAGTTCCAGATGAAACATTACCAAG
CTGGTGCTACAGCCCATCTGGCGATAGTTGCAATTGGTATAGAGATTGTT
TGCACAAATACCAAGATTGTAGCAATACCAATGCCTTCTACGCTATCGAA
TATGGAGAGCATTTTTGCCAAGCGTACGATAAAAGCAGATCGAGATTCTC
TTACCGTGGACAACAATGGGTTGACGCAGCACGGAAATGTTTACAAGTTG
CCTTAGTACCGATGTTACGTTGGAACAATAAACCTAGTTGCGCGGAGGTA
GAACAAGAAGCATTTGACTCTCACAGTTGTTGCTATCTAGCAGGTCCATC
ATGTGTTAAAGCTGGGACACCTTCCATATGTGATATCAGTGTTAGTGATT
GGGGAATTGTTTTCTCCACAATCAAAGAATCGATCATCCCATTCTCCAAG
CATGGTGCACCATGGGAAACTTTGAAAGGCCTGGTAACCACTATGGCTGG
ATGTACAAATGATTATGGAACTGACTTCATTACTTGGATAGAGCTCAAAC
TTTCAAATGTAGATGACAGTTTTCGGACGTTGTTGGACAGCAATGATTAT
GGCGAAAAAAGCAAAGCCAAAGATCTCATTTACCAACTCACCAATGAATT
GGCTGAACAAATGGAGTGGAGAAAAAGTGGACTCTTTTGGTTTGGAGGGC
TCAAAGAATCACTGAACGTCGCCAGAAAACGAAGATCAGCTCATCAAGAT
GCAGCGGTTAAGATCTCCCTGTGGTCCAACCCTGGTGAAGATCGTCCAAT
CCTTCTCAATCGAACTGTCCTTAATCTTCTTGATAAGATAGAAAAAGGAG
AgatcaaaatcaaaagtaaGCAATTGAAAGAGAGTTTTGAGATCGCCTCT
GCCACTAGCTGTCTGGATGAAAATTGCACAACAGTTAGGAAGAATGTAAC
AGCACCTTTAACGACCACCCCTAGTACTACAACAACCACTACTACGACCA
CCCCTAGTACTACAACGACCATCCCAGCTGCTGAGCCTACTTCGAAGACA
CAGAAAGGAAACTACAAAGGCAGTGGAATGAGCTTGTCACCCATAGCAAC
AGTAGCATACATTGCGATCCTTGCTATTGCATTTTGGGTAATCGGGTAGC
AAGCCTTAAGCACACAATGAGCAATAAACTTTTAATCTTCCTGCAGCGGC
ATACTTTATGgagaaaaataaattaactGACTATTTTATTGGGCTAAAAA
CTTCCCCGAAATAAATTTCATCCGGTTTATTTGACCGTGTTGATGACAAA
ATTTTTGGTTCGATAACTGAGTGTTCCCCGACTAGTTTAACCCTATATAT
AAGTTATCACCAGTaccgtagacaggaggggcacAACGTTTGCGTAGGAg
agtagatttttatgacatagtaattatctttttatattacaaatagataa
ttacagtgtcatgaaaaatctgctctcctacacaaacttttcgcccctcc
tgtctacgctactgatcACCATGttattgtaattttcaaaatacacagca
aatattattttcaaaataattttttcactgtaattttttttattcaaatt
ttaagctTTCTACCTATAACTCAATTTTCGAGTATACATCACCCAGAATA
AACAGTACGTTTATTCATCAAAGCAAAAAAGAGATTTTTACAAACCTTGG
GTTGACATCTTGAAGACAACAAAATGAGACAATGaagcatttcaattttt
tcaggtTCGATATATCTAGAACAGAAAgggatatttcaaaatttattgca
aatttatatTTTAAGTTTATTTACTTTACTTATTTTTAAGTCATGGGATA
GAATTTCTCCGCCAATTGATAATAATTCTGTAGTTTTAAACAAAATCTTG
GAAAattaatttgagaaaatgccTGATCTATTTTGATTCTGATGTGAAAA
GATTTatgcttttataagaatttttcttGTGTAAGGAACCCTTTGCTTAC
AATATCTATGAAGCAGTCTGAAACGTGAGATAAAACGCCCcgtaaaaatt
atataaattttttgtagccttagaattaaaatttgtattttatttaaaCA
ATTTTCTCAATATGTAAAACTTTATACCGagtaattaattaattaatacc
GAGTCGTCAAATAATAACTCTTCATCTTCCTGATAAAATCGTTACCATAT
TACATTTaaaaggggcgtttatttaagGGGCGTTCAAATGAAGGGGGTTG
TTTATAGATTTATAACCAAG Coding sequence (CDS) from alignment at sc0000673:108965..111984+ >TCONS_00028293 ID=TCONS_00028293|Name=TCONS_00028293|organism=Clytia hemisphaerica|type=CDS|length=1419bp|location=Sequence derived from alignment at sc0000673:108965..111984+ (Clytia hemisphaerica)
ATGCTTCTACTATTTCTGGTTGGTTTATCATCAGTTCCGGTTCAGCCTAG
TTGTAACATATATAGAGGACCTGAGGGGAGTCCAGTTTGTGTCAAAATCC
AAGGATACAATCAACCCCAATGGGCCAGTTGTTTAAGAAACCAATATATT
CTACTAAAGTCTAGCCATCGTCATGCATGTAGGAAATATTTGGGAGTTAT
CGACCCAACATTTTGCTATTACCAATGCCAATTAGAAGTATATAGTAAGG
AAACTGGTGATATCGGAGAGAAATGTCGATGTCAATTGGATGGAAAAGTT
CCAGATGAAACATTACCAAGCTGGTGCTACAGCCCATCTGGCGATAGTTG
CAATTGGTATAGAGATTGTTTGCACAAATACCAAGATTGTAGCAATACCA
ATGCCTTCTACGCTATCGAATATGGAGAGCATTTTTGCCAAGCGTACGAT
AAAAGCAGATCGAGATTCTCTTACCGTGGACAACAATGGGTTGACGCAGC
ACGGAAATGTTTACAAGTTGCCTTAGTACCGATGTTACGTTGGAACAATA
AACCTAGTTGCGCGGAGGTAGAACAAGAAGCATTTGACTCTCACAGTTGT
TGCTATCTAGCAGGTCCATCATGTGTTAAAGCTGGGACACCTTCCATATG
TGATATCAGTGTTAGTGATTGGGGAATTGTTTTCTCCACAATCAAAGAAT
CGATCATCCCATTCTCCAAGCATGGTGCACCATGGGAAACTTTGAAAGGC
CTGGTAACCACTATGGCTGGATGTACAAATGATTATGGAACTGACTTCAT
TACTTGGATAGAGCTCAAACTTTCAAATGTAGATGACAGTTTTCGGACGT
TGTTGGACAGCAATGATTATGGCGAAAAAAGCAAAGCCAAAGATCTCATT
TACCAACTCACCAATGAATTGGCTGAACAAATGGAGTGGAGAAAAAGTGG
ACTCTTTTGGTTTGGAGGGCTCAAAGAATCACTGAACGTCGCCAGAAAAC
GAAGATCAGCTCATCAAGATGCAGCGGTTAAGATCTCCCTGTGGTCCAAC
CCTGGTGAAGATCGTCCAATCCTTCTCAATCGAACTGTCCTTAATCTTCT
TGATAAGATAGAAAAAGGAGAgatcaaaatcaaaagtaaGCAATTGAAAG
AGAGTTTTGAGATCGCCTCTGCCACTAGCTGTCTGGATGAAAATTGCACA
ACAGTTAGGAAGAATGTAACAGCACCTTTAACGACCACCCCTAGTACTAC
AACAACCACTACTACGACCACCCCTAGTACTACAACGACCATCCCAGCTG
CTGAGCCTACTTCGAAGACACAGAAAGGAAACTACAAAGGCAGTGGAATG
AGCTTGTCACCCATAGCAACAGTAGCATACATTGCGATCCTTGCTATTGC
ATTTTGGGTAATCGGGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028293-exon-sc0000673-1491911889:108965..109083 | TCONS_00028293-exon-sc0000673-1491911889:108965..109083 | Clytia hemisphaerica | exon |
| TCONS_00028293-exon-sc0000673-1510915933:108965..109083 | TCONS_00028293-exon-sc0000673-1510915933:108965..109083 | Clytia hemisphaerica | exon |
| TCONS_00028293-exon-sc0000673-1575043694:108965..109083 | TCONS_00028293-exon-sc0000673-1575043694:108965..109083 | Clytia hemisphaerica | exon |
| TCONS_00028293-exon-sc0000673-1491911889:109435..111984 | TCONS_00028293-exon-sc0000673-1491911889:109435..111984 | Clytia hemisphaerica | exon |
| TCONS_00028293-exon-sc0000673-1510915933:109435..111984 | TCONS_00028293-exon-sc0000673-1510915933:109435..111984 | Clytia hemisphaerica | exon |
| TCONS_00028293-exon-sc0000673-1575043694:109435..111984 | TCONS_00028293-exon-sc0000673-1575043694:109435..111984 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000673 | supercontig | sc0000673:108965..111984 + |
Blast
The following BLAST results are available for this feature:
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