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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028290 ID=TCONS_00028290|Name=TCONS_00028290|organism=Clytia hemisphaerica|type=transcript|length=1642bp
ATCCTATCCGCCTGAGAGGCTACTCGAGCTCTCCGAAAACAAAGCCTTTC
TAGCACTAGTGAACATTCTTAGACTGAGACAAAGGAAAGGAAAAGCAGAA
ATGCTATCACCATTTTCTCGATGAACTAATATTTGAATATGTAGATTTTG
CAAGTCATTATTTCTATACCCTTGTCTTTACTTTTCATTGTCATAGAcgt
ttaattttcaatatttcatttttgaccaAATTAGCACAACAAACATATTT
ACTTTTCATGAgatcaatgacgtcattttactGGCCAAAAATCCGGGGGT
CTAGCTAATATTTTTTATTGTCGGGCCAAAAAGATAGCAGTGATGCTCAT
TTCTAgttgcaaaatgacgtcatggaTAGCATGAATTGCGGAATAGCTCA
AATAAGTATTTCAAGAAATTCTTCGTGATTCAACCTCCGAAATCTTCCGA
TTCAAAGACTTTTAGATAAAAGGATCGTTTTTTGATGATTCCATCTCAGA
GATAGCGGGGCCAGGCACACGGCACTGTTTGACTTACAAACCCATTGTGT
GAAATTTCACCATGATTTGAAACTTTCTCTTATTCGAAACGTCCTTGAAT
AATTTTTGGTCTTGACCTTGCTCTTATAACGACACCGAAAAATCTGAGTA
GCTAAATGCacaatacaagtttttttataagaacaaactatgtaagaata
TGAGGTTTCGATGGGCGAAAAATTAAGGgcaagttaaaaatattttaagg
ccTTATAAACAcataattttggatgttcttataaaaaacgtgtacaggaA
AATAAGCGGTATTTCTTTTACTACGCGACCATTTACAGTAACTTCACAGA
AATTTATTTCCTCCATCGAATCCTTAAACATTGAATAAGTTTTACCTTAA
TTGGTTCTTATAAGCGCATCAGCATTCCTTAATTTTGAAAGCATCTCCAG
GTTTTGGGTAATATGCATTTTTTCGATACGTGAATTTAGGTGAAAGATAG
AAAGAggttaaaagtttttgtttatgtttcgcAATGTGTAACCAATTAAT
TCTGGGAATTTTAGCGGCCGAAATCGTAAATTTGGTCAATTGCGGGGAAA
GTCAACGGCTTAaaggaattttcaattttttctcccCGAAAAATGTCGTT
AATTTTTTTAGTAATATCCATACTGGAATGAATCTTAATATTTCCTACAC
GTGGATGTGAGGGACAAAAATTTAAGGGATATTTTTGTTTTGCGCTTATT
TGAGTCGAAAGCATGAATCCGGAATGGTTTGGTGTTAAATTACAGTCCGT
TCATTTTCATTAAAGAATTTCCAAgtgcaaaacttttttttcaactaCCT
Taattacgcccaaattcgcgaaattaaattccgcgaaaatttcttctcgc
gaaaatttcttcccttaaggtatctgTAAAAAGactatttgtaaaaaaaa
cattattcataTGATAGTAAACGGACTGtaatttttcactttgtttttga
aagaaattttaacgCCTTTGTGAATAAGCGAAAACAATCGTTTTGTGAAA
AGTTTTaggtaaaaaattgaagaaactgTAACAGAACCAAAATAATTCAA
TAGGAAAACTCAAGCGAAAAGACCTACTATACTTGAGTCGGA Run BLAST on NCBI transcript from alignment at sc0000672:161402..163043 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028290 ID=TCONS_00028290|Name=TCONS_00028290|organism=Clytia hemisphaerica|type=transcript|length=1642bp|location=Sequence derived from alignment at sc0000672:161402..163043 (Clytia hemisphaerica)
TCCGACTCAAGTATAGTAGGTCTTTTCGCTTGAGTTTTCCTATTGAATTA
TTTTGGTTCTGTTAcagtttcttcaattttttacctAAAACTTTTCACAA
AACGATTGTTTTCGCTTATTCACAAAGGcgttaaaatttctttcaaaaac
aaagtgaaaaattaCAGTCCGTTTACTATCAtatgaataatgtttttttt
acaaatagtCTTTTTAcagataccttaagggaagaaattttcgcgagaag
aaattttcgcggaatttaatttcgcgaatttgggcgtaattAAGGtagtt
gaaaaaaaagttttgcacTTGGAAATTCTTTAATGAAAATGAACGGACTG
TAATTTAACACCAAACCATTCCGGATTCATGCTTTCGACTCAAATAAGCG
CAAAACAAAAATATCCCTTAAATTTTTGTCCCTCACATCCACGTGTAGGA
AATATTAAGATTCATTCCAGTATGGATATTACTAAAAAAATTAACGACAT
TTTTCGgggagaaaaaattgaaaattccttTAAGCCGTTGACTTTCCCCG
CAATTGACCAAATTTACGATTTCGGCCGCTAAAATTCCCAGAATTAATTG
GTTACACATTgcgaaacataaacaaaaacttttaaccTCTTTCTATCTTT
CACCTAAATTCACGTATCGAAAAAATGCATATTACCCAAAACCTGGAGAT
GCTTTCAAAATTAAGGAATGCTGATGCGCTTATAAGAACCAATTAAGGTA
AAACTTATTCAATGTTTAAGGATTCGATGGAGGAAATAAATTTCTGTGAA
GTTACTGTAAATGGTCGCGTAGTAAAAGAAATACCGCTTATTTtcctgta
cacgttttttataagaacatccaaaattatgTGTTTATAAggccttaaaa
tatttttaacttgcCCTTAATTTTTCGCCCATCGAAACCTCAtattctta
catagtttgttcttataaaaaaacttgtattgtGCATTTAGCTACTCAGA
TTTTTCGGTGTCGTTATAAGAGCAAGGTCAAGACCAAAAATTATTCAAGG
ACGTTTCGAATAAGAGAAAGTTTCAAATCATGGTGAAATTTCACACAATG
GGTTTGTAAGTCAAACAGTGCCGTGTGCCTGGCCCCGCTATCTCTGAGAT
GGAATCATCAAAAAACGATCCTTTTATCTAAAAGTCTTTGAATCGGAAGA
TTTCGGAGGTTGAATCACGAAGAATTTCTTGAAATACTTATTTGAGCTAT
TCCGCAATTCATGCTAtccatgacgtcattttgcaacTAGAAATGAGCAT
CACTGCTATCTTTTTGGCCCGACAATAAAAAATATTAGCTAGACCCCCGG
ATTTTTGGCCagtaaaatgacgtcattgatcTCATGAAAAGTAAATATGT
TTGTTGTGCTAATTtggtcaaaaatgaaatattgaaaattaaacgTCTAT
GACAATGAAAAGTAAAGACAAGGGTATAGAAATAATGACTTGCAAAATCT
ACATATTCAAATATTAGTTCATCGAGAAAATGGTGATAGCATTTCTGCTT
TTCCTTTCCTTTGTCTCAGTCTAAGAATGTTCACTAGTGCTAGAAAGGCT
TTGTTTTCGGAGAGCTCGAGTAGCCTCTCAGGCGGATAGGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028290-exon-sc0000672-1491911889:161402..163043 | TCONS_00028290-exon-sc0000672-1491911889:161402..163043 | Clytia hemisphaerica | exon |
| TCONS_00028290-exon-sc0000672-1510915933:161402..163043 | TCONS_00028290-exon-sc0000672-1510915933:161402..163043 | Clytia hemisphaerica | exon |
| TCONS_00028290-exon-sc0000672-1575043694:161402..163043 | TCONS_00028290-exon-sc0000672-1575043694:161402..163043 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000672 | supercontig | sc0000672:161402..163043 . |
Blast
The following BLAST results are available for this feature:
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