TCONS_00028285 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028285
Unique NameTCONS_00028285
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length615

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028285 ID=TCONS_00028285|Name=TCONS_00028285|organism=Clytia hemisphaerica|type=transcript|length=615bp
TGATGTTTTAACACCACTAAAATGAAGTTATAGTTTTGCCTCTTGAGAAT
TCGAAATGGTAGGTGAATTCTTTTGCTTTTATGGCGTGCTTGGAATTTTA
TTACAGCAGAACTCGACTGGGGGGACTAAATAAAAGTGCATATTTAtcgt
gaaaataaattttaacatTCTGACATAACCTATACTTCGATGTTAAATGA
ATGTCGCTAAAACATTTCTTTGATTGCTGGAGgagagtttgtttttattt
ttagactagcaaactagtctgttaattaatcatgtcatagggcgggaaca
taaaggcggcgggcgtttactagaataggagttgcctaggagaacgagca
aaactTGGTGAGAGGCTACTGATTAATAACTTTccgcccttgccgccgac
aaaaatttttcctacgcttacctaactcctacgttCACTTTtcccgttcc
agcccgactggcgtgccagtctatcTTATTTTATGAATTCTAGAAAAcaa
gttttgtttttacttttttcggGTATTTTATCATACGAAAGATTTGAAAA
CCTAGATACCATTGAAAGATAATATATTatgttatttcaaaaaaaattct
aatagAATAACGGAG
Run BLAST on NCBI

transcript from alignment at sc0000672:4950..5564

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028285 ID=TCONS_00028285|Name=TCONS_00028285|organism=Clytia hemisphaerica|type=transcript|length=615bp|location=Sequence derived from alignment at sc0000672:4950..5564 (Clytia hemisphaerica)
CTCCGTTATTctattagaattttttttgaaataacatAATATATTATCTT
TCAATGGTATCTAGGTTTTCAAATCTTTCGTATGATAAAATACccgaaaa
aagtaaaaacaaaacttgTTTTCTAGAATTCATAAAATAAgatagactgg
cacgccagtcgggctggaacgggaAAAGTGaacgtaggagttaggtaagc
gtaggaaaaatttttgtcggcggcaagggcggAAAGTTATTAATCAGTAG
CCTCTCACCAagttttgctcgttctcctaggcaactcctattctagtaaa
cgcccgccgcctttatgttcccgccctatgacatgattaattaacagact
agtttgctagtctaaaaataaaaacaaactctcCTCCAGCAATCAAAGAA
ATGTTTTAGCGACATTCATTTAACATCGAAGTATAGGTTATGTCAGAatg
ttaaaatttattttcacgaTAAATATGCACTTTTATTTAGTCCCCCCAGT
CGAGTTCTGCTGTAATAAAATTCCAAGCACGCCATAAAAGCAAAAGAATT
CACCTACCATTTCGAATTCTCAAGAGGCAAAACTATAACTTCATTTTAGT
GGTGTTAAAACATCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016024XLOC_016024Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028285-exon-sc0000672-1491911889:4950..5564TCONS_00028285-exon-sc0000672-1491911889:4950..5564Clytia hemisphaericaexon
TCONS_00028285-exon-sc0000672-1510915933:4950..5564TCONS_00028285-exon-sc0000672-1510915933:4950..5564Clytia hemisphaericaexon
TCONS_00028285-exon-sc0000672-1575043694:4950..5564TCONS_00028285-exon-sc0000672-1575043694:4950..5564Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000672supercontigsc0000672:4950..5564 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.193595	0.471367	0.4656	22.1619	28.2925	3.75546	3.37479	1.32797	2.44427	1.16232	0.30256	0.299515	0.425993	1.31197	1.2207	1.30047	0.972034	1.87112	2.4726	1.3025	1.45743	1.1377	3.51675	2.18365	1.29685	0.096989	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028285 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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