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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028280 ID=TCONS_00028280|Name=TCONS_00028280|organism=Clytia hemisphaerica|type=transcript|length=1525bp
aaacagaaaagttgcataatttcgtcaagtcattgcagtggtgcatatca
tgaattcagtTCTATTGATTAGGAGTGACGTACAAATTGAACTTAAACAA
TAAAATGGCTTCACTTAATTTCGGAGCGAAACCTTTGAACGTGGCGTTAA
TTTCTTGTTTCTTATTCTCTCTCTGTTCAGATCAAGAGACAGGGCAAGAG
ACATGTTACAAGGGAAACCAGATGGAACGTTCTTTGTGCGCAGCTCGAGT
AATTATCCATATGTCATCTCAATGGTGCACAACGGACAAATTAAACACAT
TCCTATTCTTCAAGATCCGAACACATTTCATTATGGTTTCGCCCCGCCGC
ACAATATTTATCCGACTCTTGCGTCGCTTATTAATCATTATCATAACCAA
TCGTTACGTATGCATAACCGTACGTTAGATACTACGTTAGCGTTCCCGTA
CGGCTTCCTTGAACAAGAAGAAGAACCTATTTATGATTGATTTTGGGAGA
CGTCAATACCAACTTGATTGTATGAAAACGAGGTCGGAAACCGCTTTTAC
AGCTTTTAAAAAGAGGGTATGGAGAAAACATTTAAGCAAATAGCGGCTTT
TTGTGCGTGACGAGTTTGGGACATGACAGATAGAtgcgttttttttctgg
aaataacATGTCTGTtttgagacagggttgtaagtGTCAATGATCTTTGT
TTTACACCTACTGTACCTTGCTTAAGTTGCATCTGTCATcaatttcattc
attcatttgtcACCATTTGTTGCATTCTTGTTGATGCCAAGAGCTGATGG
TAATGTCGGAGATGTTGAAGTTCATTCTAGATTTCTTGAATTATGATTTG
GTTGTCAACGTAACAGTATTTTTATATGGaagcgaaaaaaagaaaatttt
attttcaaaattttctgataatttttatcGATGGAATGGGAAAAACGAAA
ATCGTTACGTTATCAAtccgaaaattatcaaaatgggTATACACGAAGAA
GACCGCATGGTAGACGTCAGAAAACGATATGAGATAGTACTGTTGATTAT
TTCTCAATCAAGATTATGGTTATAAAACACCTTAGTGGTAAACACTTAAT
TACAATATGATTTCTGAGCCTAAATGCagataaaatgataaattacAATA
AATTTGGCAACACAAGTAGCATTATTTGATATGGTTTTCGATTGTAATCT
CGATATCAGGGAGCCATTCAGGTGACCTCTATGGAGATATTATTGGGATT
TGCTCGAAGCTGTTTGCTTGGGaatctctattgaaaaaaaacgaaaatct
ttCGAATTATTGTTCTGCCCAATTTTTGAGGTATTGTATTAAAATGGATG
CTATAAAAGTattcattctttttctttaagttttaattttgtttgtattt
tttacttttaaattaTTAACTTTAACTAACTGACTTCTTTTGAATCGAAT
TTAAATCACCTAAAAAAATACTGTGGAcactcgctaattcgaacttttat
AATTCAAACTTATTCTCACGGCCcg Run BLAST on NCBI transcript from alignment at sc0000672:130218..132323+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028280 ID=TCONS_00028280|Name=TCONS_00028280|organism=Clytia hemisphaerica|type=transcript|length=2106bp|location=Sequence derived from alignment at sc0000672:130218..132323+ (Clytia hemisphaerica)
aaacagaaaagttgcataatttcgtcaagtcattgcagtggtgcatatca
tgaattcagtTCTATTGATTAGGAGTGACGTACAAATTGAACTTAAACAA
TAAAATGGCTTCACTTAATTTCGGAGCGAAACCTTTGAACGTGGCGTTAA
TTTCTTGTTTCTTATTCTCTCTCTGTTCAGATCAAGAGACAGGGCAAGAG
ACATGTTACAAGGGAAACCAGATGGAACGTTCTTTGTGCGCAGCTCGAGT
AATTATCCATATGTCATCTCAATGGTGTAAGTAATATCTTATCAAGTCAG
ataataaaccttttcataatacgtcacaaacatcacttgcctcgtattca
atcaatttccatggtgatcatgtcccttgagacattgaatgatattttaa
aatatcataaaatttataaatagaaagtagttgtaataaaatccgctttg
agttaatcaccatggcaataatttcaaaacgatgcaagtgattttcgtaa
agtgatttatgaaaaggtctattacctTATCAATGAAAAAGGTTAGCTTG
TATTAGGTTAGGATAAGGTAAAAATCAGGTTGAAAATAACTTCCTTGGTA
AAGGCTGGCCATAGATATACCCTAGCCACAATGTAATCGATTGGTAGAAA
TGATGTGTAAAACAATAGGCTATCCCTAAAGCCTTGGTCTTTTATGGTAA
CTTTTTTACCCAGGGCGTTATATGTGGGAGCAATGACTTTAAGGATACTC
AACGAGGCGATAAtgttaaaatattgaaatgtgAAATAATAATTTACGCT
AGCTAAGATTCCCGTCTCAGCATGATCTCTCAAatcatttttatgtttca
ttaACAGGCACAACGGACAAATTAAACACATTCCTATTCTTCAAGATCCG
AACACATTTCATTATGGTTTCGCCCCGCCGCACAATATTTATCCGACTCT
TGCGTCGCTTATTAATCATTATCATAACCAATCGTTACGTATGCATAACC
GTACGTTAGATACTACGTTAGCGTTCCCGTACGGCTTCCTTGAACAAGAA
GAAGAACCTATTTATGATTGATTTTGGGAGACGTCAATACCAACTTGATT
GTATGAAAACGAGGTCGGAAACCGCTTTTACAGCTTTTAAAAAGAGGGTA
TGGAGAAAACATTTAAGCAAATAGCGGCTTTTTGTGCGTGACGAGTTTGG
GACATGACAGATAGAtgcgttttttttctggaaataacATGTCTGTtttg
agacagggttgtaagtGTCAATGATCTTTGTTTTACACCTACTGTACCTT
GCTTAAGTTGCATCTGTCATcaatttcattcattcatttgtcACCATTTG
TTGCATTCTTGTTGATGCCAAGAGCTGATGGTAATGTCGGAGATGTTGAA
GTTCATTCTAGATTTCTTGAATTATGATTTGGTTGTCAACGTAACAGTAT
TTTTATATGGaagcgaaaaaaagaaaattttattttcaaaattttctgat
aatttttatcGATGGAATGGGAAAAACGAAAATCGTTACGTTATCAAtcc
gaaaattatcaaaatgggTATACACGAAGAAGACCGCATGGTAGACGTCA
GAAAACGATATGAGATAGTACTGTTGATTATTTCTCAATCAAGATTATGG
TTATAAAACACCTTAGTGGTAAACACTTAATTACAATATGATTTCTGAGC
CTAAATGCagataaaatgataaattacAATAAATTTGGCAACACAAGTAG
CATTATTTGATATGGTTTTCGATTGTAATCTCGATATCAGGGAGCCATTC
AGGTGACCTCTATGGAGATATTATTGGGATTTGCTCGAAGCTGTTTGCTT
GGGaatctctattgaaaaaaaacgaaaatctttCGAATTATTGTTCTGCC
CAATTTTTGAGGTATTGTATTAAAATGGATGCTATAAAAGTattcattct
ttttctttaagttttaattttgtttgtattttttacttttaaattaTTAA
CTTTAACTAACTGACTTCTTTTGAATCGAATTTAAATCACCTAAAAAAAT
ACTGTGGAcactcgctaattcgaacttttatAATTCAAACTTATTCTCAC
GGCCcg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028280-exon-sc0000672-1491911889:130218..130493 | TCONS_00028280-exon-sc0000672-1491911889:130218..130493 | Clytia hemisphaerica | exon |
| TCONS_00028280-exon-sc0000672-1510915933:130218..130493 | TCONS_00028280-exon-sc0000672-1510915933:130218..130493 | Clytia hemisphaerica | exon |
| TCONS_00028280-exon-sc0000672-1575043694:130218..130493 | TCONS_00028280-exon-sc0000672-1575043694:130218..130493 | Clytia hemisphaerica | exon |
| TCONS_00028280-exon-sc0000672-1491911889:131075..132323 | TCONS_00028280-exon-sc0000672-1491911889:131075..132323 | Clytia hemisphaerica | exon |
| TCONS_00028280-exon-sc0000672-1510915933:131075..132323 | TCONS_00028280-exon-sc0000672-1510915933:131075..132323 | Clytia hemisphaerica | exon |
| TCONS_00028280-exon-sc0000672-1575043694:131075..132323 | TCONS_00028280-exon-sc0000672-1575043694:131075..132323 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000672 | supercontig | sc0000672:130218..132323 + |
Blast
The following BLAST results are available for this feature:
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