TCONS_00028252 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028252
Unique NameTCONS_00028252
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length691

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028252 ID=TCONS_00028252|Name=TCONS_00028252|organism=Clytia hemisphaerica|type=transcript|length=691bp
TTCGATGCAAGGCGATTATAATCCATTTTGAGTCTCTATTGATCGTGTTG
GTTTTATCGTGGGTTCTATACTTAGGGATTTGTCCAGTCTTATTCTAATA
AACGATTGGTTAGATTCTTTTAGAATGAGTGGAGATCTTCTGATCAATAA
ACGGCGTGAAAAATACAATGACAGTGATTCGGAACATCGGTCCAAGTCCT
TGTTAGATTGcattcgaaaaattgaaatgaaaaatgaaaacacgaGCACT
ACTCTCCAGTTGGAAAATGAAGTTTTAAacgaaaaactaaaaaaaatggc
tGCTAAGAGACGAGAATTGCAGAACAAATGTCGGCTTTTGGAAATTGAAA
ATCAGACCCTTTGCTCGAAGTTGAATCGATGTATCGAAGTTTTTGATATC
ATGCGGGCTGACTTAAATCAATCTCTTGCTCATAAGAGAATGATGCAAGA
AAAATACTCTCTTTTGCTTTAAGATAATCAACAAAAAATCAAGGTGTTAA
AATTTATGCTTAGGAGTAGAATGAATCCTAGAGACTCTTTTGGCCCTCTC
AATTGAAAGAAAACTCTCGAGTCACATTTTACGTGGGTTTGTTCAAAGGA
TAAATTTAGTGTATTTATAATGAAATAGATGGTGCATTTttatatttaca
taatttaCAAACAATGTTGTATATAAAATTAAGAATTCAAT
Run BLAST on NCBI

protein sequence of TCONS_00028252-protein

>TCONS_00028252-protein ID=TCONS_00028252-protein|Name=TCONS_00028252-protein|organism=Clytia hemisphaerica|type=polypeptide|length=115bp
MSGDLLINKRREKYNDSDSEHRSKSLLDCIRKIEMKNENTSTTLQLENEV
LNEKLKKMAAKRRELQNKCRLLEIENQTLCSKLNRCIEVFDIMRADLNQS
LAHKRMMQEKYSLLL
Run BLAST on NCBI

transcript from alignment at sc0000671:2650..3340

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028252 ID=TCONS_00028252|Name=TCONS_00028252|organism=Clytia hemisphaerica|type=transcript|length=691bp|location=Sequence derived from alignment at sc0000671:2650..3340 (Clytia hemisphaerica)
ATTGAATTCTTAATTTTATATACAACATTGTTTGtaaattatgtaaatat
aaAAATGCACCATCTATTTCATTATAAATACACTAAATTTATCCTTTGAA
CAAACCCACGTAAAATGTGACTCGAGAGTTTTCTTTCAATTGAGAGGGCC
AAAAGAGTCTCTAGGATTCATTCTACTCCTAAGCATAAATTTTAACACCT
TGATTTTTTGTTGATTATCTTAAAGCAAAAGAGAGTATTTTTCTTGCATC
ATTCTCTTATGAGCAAGAGATTGATTTAAGTCAGCCCGCATGATATCAAA
AACTTCGATACATCGATTCAACTTCGAGCAAAGGGTCTGATTTTCAATTT
CCAAAAGCCGACATTTGTTCTGCAATTCTCGTCTCTTAGCagccattttt
tttagtttttcgtTTAAAACTTCATTTTCCAACTGGAGAGTAGTGCtcgt
gttttcatttttcatttcaatttttcgaatgCAATCTAACAAGGACTTGG
ACCGATGTTCCGAATCACTGTCATTGTATTTTTCACGCCGTTTATTGATC
AGAAGATCTCCACTCATTCTAAAAGAATCTAACCAATCGTTTATTAGAAT
AAGACTGGACAAATCCCTAAGTATAGAACCCACGATAAAACCAACACGAT
CAATAGAGACTCAAAATGGATTATAATCGCCTTGCATCGAA

Coding sequence (CDS) from alignment at sc0000671:2650..3340

>TCONS_00028252 ID=TCONS_00028252|Name=TCONS_00028252|organism=Clytia hemisphaerica|type=CDS|length=348bp|location=Sequence derived from alignment at sc0000671:2650..3340 (Clytia hemisphaerica)
TTAAAGCAAAAGAGAGTATTTTTCTTGCATCATTCTCTTATGAGCAAGAG
ATTGATTTAAGTCAGCCCGCATGATATCAAAAACTTCGATACATCGATTC
AACTTCGAGCAAAGGGTCTGATTTTCAATTTCCAAAAGCCGACATTTGTT
CTGCAATTCTCGTCTCTTAGCagccattttttttagtttttcgtTTAAAA
CTTCATTTTCCAACTGGAGAGTAGTGCtcgtgttttcatttttcatttca
atttttcgaatgCAATCTAACAAGGACTTGGACCGATGTTCCGAATCACT
GTCATTGTATTTTTCACGCCGTTTATTGATCAGAAGATCTCCACTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016000XLOC_016000Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028252-proteinTCONS_00028252-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028252-exon-sc0000671-1491911889:2650..3340TCONS_00028252-exon-sc0000671-1491911889:2650..3340Clytia hemisphaericaexon
TCONS_00028252-exon-sc0000671-1510915933:2650..3340TCONS_00028252-exon-sc0000671-1510915933:2650..3340Clytia hemisphaericaexon
TCONS_00028252-exon-sc0000671-1575043694:2650..3340TCONS_00028252-exon-sc0000671-1575043694:2650..3340Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000671supercontigsc0000671:2650..3340 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.147211	0.502437	0.500038	0.733814	0	0	0	0.177185	0.372155	0.153658	0	0.68629	0.881146	0.915079	0.668728	0.269118	0	0.0566348	1.09542	1.14627	0.213497	0	0.0843944	0.0767267	0	0.0705295	0.100927	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028252 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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