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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028238 ID=TCONS_00028238|Name=TCONS_00028238|organism=Clytia hemisphaerica|type=transcript|length=3719bp
GTATAAACTACTTCCTGGTTTTGAATCACGGGACGAAACCGCCCACGTAA
TTAGTGAAGATGGTGCCTTAAAATTGAATGTTGGGGATGGGACCAAGGAA
AGACGTTTGGGTAAACAAAAACTAGATCTGGCACAGATGATTTTGGCTTT
GCAAAAGTTTAAAGACTTGGTTGTTTGTGATTTTCCGAATAAGGCTGCAG
ACATCGATAAGTACATTTCCAACATTGTTTTGATTGCCACAAAATATAGT
GGTCTAGCTTATTGGTTTTATCACGTTTATTTTTGGGACAAGGCAGCTGA
GATGTCTGACAGGGGGGAAGTTTTAAACTGGTCGGCCTTGGATTCGGAGG
CCTTGCACGCAGCGATTGCGAACGCGTCAGCTAACTTGTGCGAGCATTGC
CAGTCATTCTACCATCCATCTGGGAAGTGTCCGTTCAACCTGAGGGTCGA
TTCAGTCCAGGCAATGTCGTCAAGGCTGAAGAAGTTCCGAGAATTGTTTC
CAGAAATGGACGAACATCCGACAGTGGTGCCCGTAGACGTGAAAAGTTGG
ATTTGGCAATAGAGAAGTACAATTCGGACGCTTTAGCCAAAGGGACGAAA
ACCACGTACAGTCAAGGAGTCAAAGCATACAAGAAGTTTGAAGCCTACAT
CCAAGTCAACGAAGAAAATGCCTCTCCCCCTGACCTCAATAGGATTTTAT
TATTTGTCGCTTATCTTGCTTATCATCGTAAGCTTTCTTATAGGTGTATT
CATACTTACATGTGCAGTGTCAGAAACTGGGTGATGAAGGCAGGAGGTCG
AGATCCCTTACAATCGAAGAGGAGTCATCAGGACAGGTTTAAGCTCAAGC
AACTGTTAGCTGGCGTGAAGCGCGCAACGAGAAAAAAGCGTAATACCAAG
AAACCACTTAGAAGGAATCATATAGTCAAGAttacgaaaaaactaaattc
caCTTGCCTTTTAGACCACAATAGCAAAGTCATGTTCAAAGCTGCGTTGC
TGCTTgcctttttcggattttttagGTGCAGCGAATATACCCGCACAAGT
TCTAACAATGACTCGTTTTTGCGTCGGAAAGATGTAAAGGTAAAGCGTAA
CCAAATGAAAATAATTCTGCGAAAAACCAAGACCAACCAGTTTGAAAGTT
CCGTTGTGAAAATATACGGAAACGGGACCGAAATTTGCCCTGTACAAGCT
ATGAAACAATATCTAGATATCTCTAACCACAGACGATCGTCGTCTTTGTT
TTGGAAGGACAATAAGCCTTTGAAAAGtgtcacttttaacaaaattttga
aGGATTTACTGAAGGCAATCGGGTTAAACGTATCACATTATTCTTCTCAT
TCTTTGAGAGCTGGAGCAGCCACTACAGCTGCCAATCGTGGCATTCCCTC
TTGGTTGATCCAAAAGTTAGGAAGGTGGCATTCGAGCTGCTACAAGATAT
ACATTAGAAACCctgaaaaatccttaaaattggCTCAGCTGTCTATGTCC
AAATAGGGTCGGTTTTTACTTTAATAGGCTagcattgtttttgtttatat
ttaatCATACTCAAAATTCGGAGCTTcgctttaattttattttttgtgtg
tTGTTTTTTCAATGTCCTTGGCCAGGGCATCAggttttcatttcttcctt
acAGACCTCGTAATGACAACTAGTACTTGGGAATTGTCCATGCGTCTCAC
TTTATCTTGATTACATGCGAGACTTATGTTACTTTacatctgtttttttt
ttctttcgttaaagcctgattgttcttatcttttcctttttttttagtCT
ATTGCACTGTACAtaactatttttttttactaGGATAtcgtgtttgtttg
ttttattttgaaataggTCTATATCTGTTTGTTTTGTTGGGTTTTCCCCG
GCATTTATATTGATTTACACTAGCTTTTTCTAATTTGAGTTTAAAATATC
ATTTCACATAACTATTATAGACTGAAGTGTCTCTGTCAGTCGGCTGACAA
AGGTAGATTTGGAGTAATACAAAGTAGGATCATTGAAGGGCATTGATTAG
NNNNNNNTTTGagtttaaaatattatttcacATAACTATTATAGACTGAA
GTGTCTCTGTCAGTCGGCTGACAAAGGTAGATTTGGAGTAATACAAAGTA
GGATCATTAAAGGGCATTGATTAGATGACTTGAATAGCCTGTTATAACAA
GACTGTAAAGTTATAAACGGCTCATGCTGCGGATCAGGGGCAAGTTTAAT
ATAGTTTTTCATGGCCTTTGATAGATTTAGGTTTAATATAAAATCGgtat
ataaaataataattagttTTCTATTACGTATTCTTTTGCtacaaaatttt
ccaagaaagagtatgtttaCATTGAGTCATTATCACACGTAGAGCATCAG
TTGTATAGATAGCTGGTCAAGACTTGGGAAGAAGGCAAGAAAATTTAAGT
TATGAAGAAAGATATTTGGTACCCCTCAATTAGCTAGCATGTTATAGAAT
GGGCAAGGATGGAGTGAACTGTAAAGGACGTACTACCAATAACAAGTTTT
TTCATAATTACTAATGGCTAGAATTGATAGCAATGAGCAACTTTGGGTAT
CCAAATAATCCGTTTTCCCTTTCAATAAAGGGCTTGTAATTGTAGTTGTG
ATAGATTCTCCTACCGGAACGGCTGTACGGCTAGGAGTCTCTCAGCAGCG
AGGATGTTAGTGTAAATGTTCGTAGTGCATGTTGTGAGGATCCAGACCGG
CTGTCTGGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNGAGATCAGATTCGGAACAAAGTCCGGCTCCTTCCCGGCTGGTGGCG
GATCTCTCTTAAGTTTCAGTATGCACAAGGTTGTGATAGATTCTCTTGCC
GGACCGGCTGTACGGACAGGAGTTTCTCAGCTGCGAGCATGATACAGTAG
GGAAACTGTCCATAGCGTTGATTTAGGCTTTGTGTTTTCCATTTCATACA
GCAAGAGATTTTGTCCCACACGAATTACGCGCGATGGACAGTTTCCTGTA
GCTATTAGGCTGTGCACGGTGATGAGGGGCCAGGCCTTGAGTCTGGGCAA
CCCGGCTGGTTGCGAAACCCCGCCGATTCTGGGTTTATTCATCGTTTAGG
AAGTCGGATCAGGTACATAGTCCGGCACCTACCCGGCTGATGGTGGACTT
CCTGTCGGGTGCACATTGTTGTTTTACCTTTCTTTGTGTGATGTAGGCGT
AAAATAGTTGAAATAATTCAATATGTTATAACATATCAGCTTTCGTTTAT
ATTTAGTTATCTTATGTTGTTAGTATATACTTTTATTGGCTTATCTAATT
TACTCATAGAAAATTTGTACGTAGGCCCGTCTTCCTGCAACCTTTCAGGC
GCGACGAAGTATAATTTGGGGATACCTTCGGTTGGGAAATATTTTATCCC
CAAAATTATTTGTATAGGAGTGGTTAGCCAAATAACAAACGCCAAAACTT
ATACACTGGTTTCCCTTATCGTTCACCCACTTCTGGGCTTTCCGTTCTGC
TCACAGCGTCTTTTCCAGtagtaaaaaatagaaagttaaaatgtcacttt
aattgaatcgaaatgatatacagactttatgttatgattctctatcactg
actctttttacaaagcattgatgactttttgtaagttgtgttttcaacga
cgggaataaaaatatcgac Run BLAST on NCBI transcript from alignment at sc0000671:67974..73497+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028238 ID=TCONS_00028238|Name=TCONS_00028238|organism=Clytia hemisphaerica|type=transcript|length=5524bp|location=Sequence derived from alignment at sc0000671:67974..73497+ (Clytia hemisphaerica)
GTATAAACTACTTCCTGGTTTTGAATCACGGGACGAAACCGCCCACGTAA
TTAGTGAAGATGGTGCCTTAAAATTGAATGTTGGGGATGGGACCAAGGAA
AGACGTTTGGGTAAACAAAAACTAGATCTGGCACAGATGATTTTGGCTTT
GCAAAAGTTTAAAGACTTGGTTGTTTGTGATTTTCCGAATAAGGCTGCAG
ACATCGATAAGTACATTTCCAACATTGTTTTGATTGCCACAAAATATAGT
GGTCTAGCTTATTGGTTTTATCACGTTTATTTTTGGGACAAGGCAGCTGA
GATGTCTGACAGGGGGGAAGTTTTAAACTGGTCGGCCTTGGATTCGGAGG
CCTTGCACGCAGCGATTGCGAACGCGTCAGCTAACTTGTGCGAGCATTGC
CAGTCATTCTACCATCCATCTGGGAAGTGTCCGTTCAACCTGAGGGTCGA
TTCAGTCCAGGCAATGTCGTCAAGGGTAAGTGTCTTAGATACGGTCGATT
CGGTTGATCTCGATAGGGAAAGGGGGAAGGCATACTATAGAGGTAAGCGC
ATTTGNTGTCGTCAAGGGTAAGTGTCTTAGATACGGTCGATTCGGTTGAT
CTCGATAGGGAAAGGGGGAAGGCATACTATAGAGGTAAGCGCATTTGCAA
TCGTTTTAATTTTTCTGCATGTAATTTGAAAAGCTGTGAGTTTCTTCATA
TATGTAGGTTTTGTAACGTTAATGGTCATGGCATAAGGAAGTGCCCTGAC
GCTTCTTCAAGAAAATGACTCTCTCCAGGTACAGTTTCTTCTCCAATTAA
TGTCACTAACTTATCAGAGGAATTGAGGAATCATCCGGAAAGAGAGTTTG
TTGAATTTTTACTACAGGGGTTTACAGAAGGTTTTGAAATCGGTTATCAT
GGTCCAGACATGCATAGAATATCTCGTAACCTAAGGTCAGCAGACGCAAA
TCCAGACGTCGTAGATAAGTATCTTAGTGAGGAGGTTCAAAAGGGTAGGA
TTATGGGGCCTTTTAACTCTTTGCCACTTGAAAACCTTCAATGTCAACCG
ATTGGGATAGTTCCCAAGAAGCAACCAGGCAAGTTTAGAACCATAATGGA
TCTCTCCTACCCTGATGGTTCATCCATTAATGACTTCATTGACAAAGAAG
AATTCTCCCTTAAATACGTCACAATTGATAAGGCTATTGAGTTTATTCAG
TTTTTAGGCCAAGGCTGCTTTCTAAGTAAGGTCGACATAGAAGGAGCTTT
TAGAATCATCCCAGTCTCACCGAACGATTTTAATCTCTTAGGGATTTGCT
GGAGGGACAGGTTTTATTACGATACAAGACTTTCTATGGGAGGAAGATCC
AGCCCCGGCTTATTTGATAAGTTTGCATGTGCCTTGGAGTGGATAGCTGT
TAACAACTATAAACTGAGTCATACTTGCCACCTTCTTGACGACTTCCTTA
CTGCTGAGGCACCTTCAGAAAAGGGAAAGGGTTTAGAGAGGCTGTTGTAT
TTCTTCGACAAGTTGAATGTTCCAGTGGCTAGTCACAAAGTAGAAGGTCC
TAGTCAGAAATTGGAATTCTTGGGCATAACATTGGATACAGTAGCATTAG
AGGCTTCTTTGTCAGAGGAGAAGATATCAAAGCTTAAAAATGAGATTGAC
GAGTTTCTTTCCAAGAAGAAATGTACCAAAAGAGAACTACTCAGCTTGAT
AGGGTCGCTTAGCTTTGATTGCAAGATTGTCGTGCCAGGAAGGGTTTTCT
TGCACCGCTTGATCACGTTAAGCTGTACAGTAAAAAGATTGGACCACAAG
ATATACATCAATTTACCAGCTAGAGAGGACCTTTATATGTGGCAAGAGTT
CTTACGAGATTGGAATGGGAGGCAATTTTTCTTAGATAACGATGTAAGTA
AATCTTTCGATATGGAGTTTTACACAGATGCGTCAAGTACGGTAGGATAT
GGTGGTTGTTTTGGGAAGCACTGGTTCTGTGATATGTGGGAAGAGGAAAA
GATTAATCAGTTAGGCGTTTTTATGTCGGCGAGAGAATTGTTTCCGATTT
TGATTGCAGCACATTTGTGGGGAGGTGAGTGGTCTAGGAAAAGGATTTAG
GTATTTTGCGACAATGAAGGCACTGTGGCAGTCATTAATAAGGGTTATAC
AAGTGAGAAACTAATGGCAAAAATGTTGAGAAGACTGACTTTAATCAGTA
TGTCAAAGAATTTTTCTATAAAGGCAGTACATATTCCAGGGTACAAAAAT
GTCAAGGCTGATCTGTTATCTCGTTTACAGCTGAAGAAGTTCCGAGAATT
GTTTCCAGAAATGGACGAACATCCGACAGTGGTGCCCGTAGACGTGAAAA
GTTGGATTTGGCAATAGAGAAGTACAATTCGGACGCTTTAGCCAAAGGGA
CGAAAACCACGTACAGTCAAGGAGTCAAAGCATACAAGAAGTTTGAAGCC
TACATCCAAGTCAACGAAGAAAATGCCTCTCCCCCTGACCTCAATAGGAT
TTTATTATTTGTCGCTTATCTTGCTTATCATCGTAAGCTTTCTTATAGGT
GTATTCATACTTACATGTGCAGTGTCAGAAACTGGGTGATGAAGGCAGGA
GGTCGAGATCCCTTACAATCGAAGAGGAGTCATCAGGACAGGTTTAAGCT
CAAGCAACTGTTAGCTGGCGTGAAGCGCGCAACGAGAAAAAAGCGTAATA
CCAAGAAACCACTTAGAAGGAATCATATAGTCAAGAttacgaaaaaacta
aattccaCTTGCCTTTTAGACCACAATAGCAAAGTCATGTTCAAAGCTGC
GTTGCTGCTTgcctttttcggattttttagGTGCAGCGAATATACCCGCA
CAAGTTCTAACAATGACTCGTTTTTGCGTCGGAAAGATGTAAAGGTAAAG
CGTAACCAAATGAAAATAATTCTGCGAAAAACCAAGACCAACCAGTTTGA
AAGTTCCGTTGTGAAAATATACGGAAACGGGACCGAAATTTGCCCTGTAC
AAGCTATGAAACAATATCTAGATATCTCTAACCACAGACGATCGTCGTCT
TTGTTTTGGAAGGACAATAAGCCTTTGAAAAGtgtcacttttaacaaaat
tttgaaGGATTTACTGAAGGCAATCGGGTTAAACGTATCACATTATTCTT
CTCATTCTTTGAGAGCTGGAGCAGCCACTACAGCTGCCAATCGTGGCATT
CCCTCTTGGTTGATCCAAAAGTTAGGAAGGTGGCATTCGAGCTGCTACAA
GATATACATTAGAAACCctgaaaaatccttaaaattggCTCAGCTGTCTA
TGTCCAAATAGGGTCGGTTTTTACTTTAATAGGCTagcattgtttttgtt
tatatttaatCATACTCAAAATTCGGAGCTTcgctttaattttatttttt
gtgtgtTGTTTTTTCAATGTCCTTGGCCAGGGCATCAggttttcatttct
tccttacAGACCTCGTAATGACAACTAGTACTTGGGAATTGTCCATGCGT
CTCACTTTATCTTGATTACATGCGAGACTTATGTTACTTTacatctgttt
tttttttctttcgttaaagcctgattgttcttatcttttccttttttttt
agtCTATTGCACTGTACAtaactatttttttttactaGGATAtcgtgttt
gtttgttttattttgaaataggTCTATATCTGTTTGTTTTGTTGGGTTTT
CCCCGGCATTTATATTGATTTACACTAGCTTTTTCTAATTTGAGTTTAAA
ATATCATTTCACATAACTATTATAGACTGAAGTGTCTCTGTCAGTCGGCT
GACAAAGGTAGATTTGGAGTAATACAAAGTAGGATCATTGAAGGGCATTG
ATTAGNNNNNNNTTTGagtttaaaatattatttcacATAACTATTATAGA
CTGAAGTGTCTCTGTCAGTCGGCTGACAAAGGTAGATTTGGAGTAATACA
AAGTAGGATCATTAAAGGGCATTGATTAGATGACTTGAATAGCCTGTTAT
AACAAGACTGTAAAGTTATAAACGGCTCATGCTGCGGATCAGGGGCAAGT
TTAATATAGTTTTTCATGGCCTTTGATAGATTTAGGTTTAATATAAAATC
GgtatataaaataataattagttTTCTATTACGTATTCTTTTGCtacaaa
attttccaagaaagagtatgtttaCATTGAGTCATTATCACACGTAGAGC
ATCAGTTGTATAGATAGCTGGTCAAGACTTGGGAAGAAGGCAAGAAAATT
TAAGTTATGAAGAAAGATATTTGGTACCCCTCAATTAGCTAGCATGTTAT
AGAATGGGCAAGGATGGAGTGAACTGTAAAGGACGTACTACCAATAACAA
GTTTTTTCATAATTACTAATGGCTAGAATTGATAGCAATGAGCAACTTTG
GGTATCCAAATAATCCGTTTTCCCTTTCAATAAAGGGCTTGTAATTGTAG
TTGTGATAGATTCTCCTACCGGAACGGCTGTACGGCTAGGAGTCTCTCAG
CAGCGAGGATGTTAGTGTAAATGTTCGTAGTGCATGTTGTGAGGATCCAG
ACCGGCTGTCTGGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNGAGATCAGATTCGGAACAAAGTCCGGCTCCTTCCCGGCTGG
TGGCGGATCTCTCTTAAGTTTCAGTATGCACAAGGTTGTGATAGATTCTC
TTGCCGGACCGGCTGTACGGACAGGAGTTTCTCAGCTGCGAGCATGATAC
AGTAGGGAAACTGTCCATAGCGTTGATTTAGGCTTTGTGTTTTCCATTTC
ATACAGCAAGAGATTTTGTCCCACACGAATTACGCGCGATGGACAGTTTC
CTGTAGCTATTAGGCTGTGCACGGTGATGAGGGGCCAGGCCTTGAGTCTG
GGCAACCCGGCTGGTTGCGAAACCCCGCCGATTCTGGGTTTATTCATCGT
TTAGGAAGTCGGATCAGGTACATAGTCCGGCACCTACCCGGCTGATGGTG
GACTTCCTGTCGGGTGCACATTGTTGTTTTACCTTTCTTTGTGTGATGTA
GGCGTAAAATAGTTGAAATAATTCAATATGTTATAACATATCAGCTTTCG
TTTATATTTAGTTATCTTATGTTGTTAGTATATACTTTTATTGGCTTATC
TAATTTACTCATAGAAAATTTGTACGTAGGCCCGTCTTCCTGCAACCTTT
CAGGCGCGACGAAGTATAATTTGGGGATACCTTCGGTTGGGAAATATTTT
ATCCCCAAAATTATTTGTATAGGAGTGGTTAGCCAAATAACAAACGCCAA
AACTTATACACTGGTTTCCCTTATCGTTCACCCACTTCTGGGCTTTCCGT
TCTGCTCACAGCGTCTTTTCCAGtagtaaaaaatagaaagttaaaatgtc
actttaattgaatcgaaatgatatacagactttatgttatgattctctat
cactgactctttttacaaagcattgatgactttttgtaagttgtgttttc
aacgacgggaataaaaatatcgac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028238-exon-sc0000671-1491911889:67974..68448 | TCONS_00028238-exon-sc0000671-1491911889:67974..68448 | Clytia hemisphaerica | exon |
| TCONS_00028238-exon-sc0000671-1510915933:67974..68448 | TCONS_00028238-exon-sc0000671-1510915933:67974..68448 | Clytia hemisphaerica | exon |
| TCONS_00028238-exon-sc0000671-1575043694:67974..68448 | TCONS_00028238-exon-sc0000671-1575043694:67974..68448 | Clytia hemisphaerica | exon |
| TCONS_00028238-exon-sc0000671-1491911889:70254..73497 | TCONS_00028238-exon-sc0000671-1491911889:70254..73497 | Clytia hemisphaerica | exon |
| TCONS_00028238-exon-sc0000671-1510915933:70254..73497 | TCONS_00028238-exon-sc0000671-1510915933:70254..73497 | Clytia hemisphaerica | exon |
| TCONS_00028238-exon-sc0000671-1575043694:70254..73497 | TCONS_00028238-exon-sc0000671-1575043694:70254..73497 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000671 | supercontig | sc0000671:67974..73497 + |
Blast
The following BLAST results are available for this feature:
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