TCONS_00028225 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028225
Unique NameTCONS_00028225
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length252

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028225 ID=TCONS_00028225|Name=TCONS_00028225|organism=Clytia hemisphaerica|type=transcript|length=252bp
CAATCCATTACCCAACCAACCCAAATGTCATCAAGGGACTTTTTGATTAA
GGAGCTGTCATAAAGCTGAACTAAACCCACCATAACATGAATAAATCTCT
TGAGAGATATCCATCCATTCTTTTTAGTGACCACTTCAGagacgtttttt
tcttttgtttttgttacaATGTTTGAACAAATATTAAGTCACCCTTCTCT
TTATGTTTGTGTTGTGTTGGTGTTTTTGATAACAGTAACATTTCAATCGT
CA
Run BLAST on NCBI

transcript from alignment at sc0000670:26439..26690

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028225 ID=TCONS_00028225|Name=TCONS_00028225|organism=Clytia hemisphaerica|type=transcript|length=252bp|location=Sequence derived from alignment at sc0000670:26439..26690 (Clytia hemisphaerica)
TGACGATTGAAATGTTACTGTTATCAAAAACACCAACACAACACAAACAT
AAAGAGAAGGGTGACTTAATATTTGTTCAAACATtgtaacaaaaacaaaa
gaaaaaaacgtctCTGAAGTGGTCACTAAAAAGAATGGATGGATATCTCT
CAAGAGATTTATTCATGTTATGGTGGGTTTAGTTCAGCTTTATGACAGCT
CCTTAATCAAAAAGTCCCTTGATGACATTTGGGTTGGTTGGGTAATGGAT
TG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015979XLOC_015979Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028225-exon-sc0000670-1491911889:26439..26690TCONS_00028225-exon-sc0000670-1491911889:26439..26690Clytia hemisphaericaexon
TCONS_00028225-exon-sc0000670-1510915933:26439..26690TCONS_00028225-exon-sc0000670-1510915933:26439..26690Clytia hemisphaericaexon
TCONS_00028225-exon-sc0000670-1575043694:26439..26690TCONS_00028225-exon-sc0000670-1575043694:26439..26690Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000670supercontigsc0000670:26439..26690 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.457	5.79504	7.56967	4.93716	2.0035	0.791598	0	0	0	0	0	0	0	0	0.843611	0	3.34585	5.14409	2.36894	1.65262	2.15464	2.10192	2.55515	5.42035	0	0	10.1857	14.1316	4.12244	4.20011
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028225 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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