TCONS_00028215 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028215
Unique NameTCONS_00028215
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2056

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028215 ID=TCONS_00028215|Name=TCONS_00028215|organism=Clytia hemisphaerica|type=transcript|length=2056bp
catcgaagagtgtgattaacgattaattgctctctccgggatgcaattaa
cgattgattactctctttgaaggcgcgctaaataagaaaaaataactcat
catatttcatttcattttagaataaaataaatcaacttaaaaaaaaacga
aacaataccgtgaataacaaaattttatgggaaaatattgtaaattaaaa
aaatgcgaAACATGTTTCATGggaatttgttttttcattACTGGAGCTGT
TTTACTTGGACTTGGTTGTCAACCAGTGGAAACATATCAGAAAGGTGATC
TTTGCGACGATCCATATGGTTGGGACTTGATTCAATGTGAGATCGGTAAG
GAAAAAAGTTGGGATGGTgagaaaaaattatattttaaagttttcgGTCC
CATTTCTCTTATTCTTGGTCTTGTTCTCATGATTATCCCGATCGTGATGT
GGGTGACTAAGTGTGGCGACGACGGATGTTGTAGTTACGGCGACGACGAT
GATGAGCTATCGATCGGGGAACTGAACCGACTAACTTCAGAGCGCATCCG
TCAAGAAGAGAGAAATCGTTCATTTGAAACGTCGAATACAGAAAGACTAG
ATGATCTATTAGCTGCCTATGAGACATCATTACCAAGTTCCCATCATGAG
CGACGCTCTAGTTCACCCATGGTGACACCATCAGCACCACTACCTAGCAG
CTCTACACCCAGTGCGCCTCCTCAAGCGACAGGTGGCCGAGGGAGTGTTC
CTGAAAGACGTGTACAGCCAGGTCAACTGTacaatgACCAACCGCCAGGT
TACGATCAATTACTCCACCCACCAACTTATTGGGAAGCTCTTGAACTTGA
AGGTCATTTTGATGAAGGAGGCGCCGACACAGAAGAAAATGAGGATGGAG
ACACAACTGTTTAAAGACTGCTGGCTAATGACCTAAATAAATGACGATGT
TACCTAAATGAataaaatcatataaaaatgaAGGCCGAACGCCAAGCCAT
GGTCAACAAgatcatttttgaagataaTAACAGAGAAGAAATGGACACAT
AACTGTTAGAAGACAACTGGCAAAAGGACAAAGGAGAATGTTACCCAAGT
ACATGAAATTATAAAATGCCAAGCCAAACATTGATTCTATGAGGTCTTGA
AGATCAAAAACCACCTCAGTTGTCACATGTATAGCTTGTTACAAAACAAA
GGGAACCTTCCTCTGGGGGCTTGAGTTCGAGCACTGTGACactatacctt
atcggggaaaacttcgtcggggaaaagtgacgaaattttggacaagtgac
gaatattttccgcgacgaaaatttttccccggccttaatgcgtttaccaa
ctaccagcaagtgacgaatttttccccgatcaaaatttttcccgacgatt
ttttccccgataagataATTGTACAAATTTTAACCGTAATCTATATTCAC
TTTTCTAATTCACTTTTCTAATAATCGAACTGATAATTGCATCAATGATG
TGCGAAAATGCAGCGGTCTTGGTTAATGAAAAATTATGTTTCTTTTAAGT
AATTTGCTCTGCTGCAGTATCGAGCACCCTGATTGTGAAAAGACCATTTT
CAAGACAAAGGATTATATgcactggcggatttaagacaatagagcaagta
tgtcggaaacatgcgaaggatTGCAACGCGTCAAGCTCGTTAAAAGATAA
TGAAATAAACAGTTACAAGTCTTttcctctgataagtttgacatggtcta
aaaccgcctatgatCAGTATTCAAGAAAATATCTTTGATATCCAtgctca
aaatttccaaaataaattACTTCAACCAATCACATAAAGTTCTAAAACTT
AGGGCTTGATGTGATACAGCTGATAACCCATGATCCGTTCAATTATTAGC
TGCGAGTACGCATGCGTTCTTTCCAAAGTCTAACAGTAGATTGGTCTACA
GAGTTCAGCAATAACAGAACAAttcttgtaaatattttttgtatatCCAA
AAACTAACGGCGAAACATCATTTTTATGACTTTACATTACATAACCTTAG
CGTCAG
Run BLAST on NCBI

transcript from alignment at sc0000670:111818..114145-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028215 ID=TCONS_00028215|Name=TCONS_00028215|organism=Clytia hemisphaerica|type=transcript|length=2328bp|location=Sequence derived from alignment at sc0000670:111818..114145- (Clytia hemisphaerica)
CATCGAAGAGTGTGATTAACGATTAATTGCTCTCTCCGGGATGCAATTAA
CGATTGATTACTCTCTTTGAAGGCGCGCTAAATAAGAAAAAATAACTCAT
CATATTTCATTTCATTTTAGAATAAAATAAATCAACTTAAAAAAAAACGA
AACAATACCGTGAATAACAAAATTTTATGGGAAAATATTGTAAATTAAAA
AAATGCGAAACATGTTTCATGGGAATTTGTTTTTTCATTACTGGAGCTGT
TTTACTTGGACTTGGTTGTCAACCAGTGGAAACATATCAGAAAGGTGATC
TTTGCGACGATCCATATGGTTGGGACTTGATTCAATGTGAGATCGGTAAG
GAAAAAAGTTGGGATGGTGAGAAAAAATTATATTTTAAAGTTTTCGGTCC
CATTTCTCTTATTCTTGGTCTTGTTCTCATGATTATCCCGATCGTGATGT
GGGTGACTAAGTGTGGCGACGACGGATGTTGTAGTTACGGCGACGACGAT
GATGAGCTATCGATCGGGGAACTGAACCGACTAACTTCAGAGCGCATCCG
TCAAGAAGAGAGAAATCGTTCATTTGAAACGTCGAATACAGAAAGACTAG
ATGATCTATTAGCTGCCTATGAGACATCATTACCAAGTTCCCATCATGAG
CGACGCTCTAGTTCACCCATGGTGACACCATCAGCACCACTACCTAGCAG
CTCTACACCCAGTGCGCCTCCTCAAGCGACAGGTGGCCGAGGGAGTGTTC
CTGAAAGACGTGTACAGCCAGGTCAACTGTACAATGGTAAGAAACTTAGT
AGTTTGTCACATAATCAGAAAATTTAATACGAACCATAGTAAATTTTCTT
GATAATAAGTTTTTAGCTGAAGCCATTTTATAAGTTAAAAAGTTAAAAAA
AGATCTTCAGTCAAAATAGGCTTGGTTCGTTATGATTAAAAAATCGACAG
TTGACCCTAAATTGCTGAAATATTCATTATGGGAGTATATGTAATACGTC
ATAGTTTTCAATAAAAATACCGTAAACTTAATTCAATTATTATCAATTTT
TACCATAGACCAACCGCCAGGTTACGATCAATTACTCCACCCACCAACTT
ATTGGGAAGCTCTTGAACTTGAAGGTCATTTTGATGAAGGAGGCGCCGAC
ACAGAAGAAAATGAGGATGGAGACACAACTGTTTAAAGACTGCTGGCTAA
TGACCTAAATAAATGACGATGTTACCTAAATGAATAAAATCATATAAAAA
TGAAGGCCGAACGCCAAGCCATGGTCAACAAGATCATTTTTGAAGATAAT
AACAGAGAAGAAATGGACACATAACTGTTAGAAGACAACTGGCAAAAGGA
CAAAGGAGAATGTTACCCAAGTACATGAAATTATAAAATGCCAAGCCAAA
CATTGATTCTATGAGGTCTTGAAGATCAAAAACCACCTCAGTTGTCACAT
GTATAGCTTGTTACAAAACAAAGGGAACCTTCCTCTGGGGGCTTGAGTTC
GAGCACTGTGACACTATACCTTATCGGGGAAAACTTCGTCGGGGAAAAGT
GACGAAATTTTGGACAAGTGACGAATATTTTCCGCGACGAAAATTTTTCC
CCGGCCTTAATGCGTTTACCAACTACCAGCAAGTGACGAATTTTTCCCCG
ATCAAAATTTTTCCCGACGATTTTTTCCCCGATAAGATAATTGTACAAAT
TTTAACCGTAATCTATATTCACTTTTCTAATTCACTTTTCTAATAATCGA
ACTGATAATTGCATCAATGATGTGCGAAAATGCAGCGGTCTTGGTTAATG
AAAAATTATGTTTCTTTTAAGTAATTTGCTCTGCTGCAGTATCGAGCACC
CTGATTGTGAAAAGACCATTTTCAAGACAAAGGATTATATGCACTGGCGG
ATTTAAGACAATAGAGCAAGTATGTCGGAAACATGCGAAGGATTGCAACG
CGTCAAGCTCGTTAAAAGATAATGAAATAAACAGTTACAAGTCTTTTCCT
CTGATAAGTTTGACATGGTCTAAAACCGCCTATGATCAGTATTCAAGAAA
ATATCTTTGATATCCATGCTCAAAATTTCCAAAATAAATTACTTCAACCA
ATCACATAAAGTTCTAAAACTTAGGGCTTGATGTGATACAGCTGATAACC
CATGATCCGTTCAATTATTAGCTGCGAGTACGCATGCGTTCTTTCCAAAG
TCTAACAGTAGATTGGTCTACAGAGTTCAGCAATAACAGAACAATTCTTG
TAAATATTTTTTGTATATCCAAAAACTAACGGCGAAACATCATTTTTATG
ACTTTACATTACATAACCTTAGCGTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015972XLOC_015972Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028215-exon-sc0000670-1575043694:113360..114145TCONS_00028215-exon-sc0000670-1575043694:113360..114145Clytia hemisphaericaexon
TCONS_00028215-exon-sc0000670-1575043694:111818..113087TCONS_00028215-exon-sc0000670-1575043694:111818..113087Clytia hemisphaericaexon
TCONS_00028215-exon-sc0000670-1510915933:113360..114145TCONS_00028215-exon-sc0000670-1510915933:113360..114145Clytia hemisphaericaexon
TCONS_00028215-exon-sc0000670-1510915933:111818..113087TCONS_00028215-exon-sc0000670-1510915933:111818..113087Clytia hemisphaericaexon
TCONS_00028215-exon-sc0000670-1491911889:113360..114145TCONS_00028215-exon-sc0000670-1491911889:113360..114145Clytia hemisphaericaexon
TCONS_00028215-exon-sc0000670-1491911889:111818..113087TCONS_00028215-exon-sc0000670-1491911889:111818..113087Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000670supercontigsc0000670:111818..114145 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.76611	2.01818	1.57364	1.6328	12.2763	8.84601	9.43173	10.7803	6.25578	8.70904	10.5268	5.76245	4.52527	3.69359	2.07917	2.76545	7.98847	7.68212	4.6594	8.36113	6.50313	6.06939	2.51129	2.82972	4.61361	5.67772	3.84505	4.7879	3.344	3.09049
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028215 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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