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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028192 ID=TCONS_00028192|Name=TCONS_00028192|organism=Clytia hemisphaerica|type=transcript|length=2122bp
cccttagagagactttgaaaggtgaaaaaccgacccttaccgtccgtata
cccagcacccatttttgccaaAGCACCCGGGCAATTTGGAAGACTTGCAT
TTCAATTTTGCATTGATATTGTGAattcttttttacattttaactATTGC
ATAAAAATCCCATTATATACACATATATTCCAACGAAATAAATAACTGTA
CTGTATAATATACAAAATAATTTAGGGTCAATAAGgtttatttttaatta
taaaaacTAGTTAACGTTGATTACTCTCTGAATGAGTTAAAAATGACACG
ATGAAGTTTGGTTTTTCTCTTAGTGCAGATCGggtagatttttcactaaa
cAATATAACTAGAGACAGTTCTCGTCGTTGCAAACGTCTGGTTAATACGC
TTGAAATAAATAACTTAGTCTGATAAGGAACATATTAGGCAGAGGAGCGA
CAATCATGGAATGTGACGCcctgaaaagatattttatccCTCAAAAGACC
CCTAAAGACCATATTATCGACTTAATTGAGAAGTTTACTAAACACCTATT
GCAGAGCTGCTAATCAAcctgaaaattaattatttttgaaattatttcaa
ccaaaatttcacgTCAAAAGCCTTTAGGAACGTGAAGacaacattttttt
attctttcataaCAAATGCCAGATAGATTAGCCAATCGCCTTGCACAGTT
GCAACCTCTCTATTGTCTCGAAATCCCCACGTGGCTTCTGTATGTCGAAC
CAAGATGGTCGTTTTCGTATTATCTGAAGGATGAAGAATTTTGACGCATT
TCAGATTCATGAAACATCTCCAACCTAAATCAGAAGGCTTAATGTAATCT
TGGATTCTGAAGGAACGATAAACAAGATTTGTCAAAGGTTGTCGATCGCA
AATAATCTTGAAGATTAAGACATCTTTGGTTAAGAAACTGGTTTCGATTT
TGTCGAACAAGGTTTTGTACCATCTAGCATAATTTGATGATTTCTCAGTT
TCAAAAACCATTTTGGAACCAAGTGTTATGATGAGAGACAAGTCAGATGA
CATTTGGCTTGAGCtcaaaaagccatttttcaaattttcattctcCTGTT
GTaagctttcgatttcaagcttTAAGCGACAATtactgttttcttttttg
tttaaagTTTCATTCAATCTTTTATTCTCAATCCTCAAAATCTCAAGCTC
GTTGTCATTCTCGAATGAGCCCTCCTCATTTTGTTTGCCACCGTTACTTT
TCTTgacttcatttttcatttttccaagttCAGCTTCGAATTTCGTTCTC
TCAACTCCAGACGCACTGTCCACAAACTCCGCTTGACTTTCCTTCAATAA
GACATTCTCCTTTTCCAGAAATTCCTTCTCAGCTTTAAGTATTTTCAAGT
TCTCCTCAACTTtcaatttctcatttttaagaACTTTCAACGAATCACCG
TACTGTTTCTCAGCTTTCAGTAACAAATTCTCAGAACGTAATTTCAGAAT
CTCATTTTCACTTTGCATTTGATCCTTGACCAACTCCAGCTGCTTTAATT
CACTatcttttctcaaattttcgttTTCGAGTTTCAATTTCTCAAGTTCG
TTCTTAATCTTCAAgttcttcaattcttctttataAACGTAAAGTTGATT
AATGCTTTCAGCCGTCCTAGAATCCCATTTATCAGACCCATCTGAATTCA
AATCTTTTCGAAAACAAGCTGCATTCAAAATATGTTCCTTGGTCACATCT
TCCCGGACCCCTGCAGCATTGCAAGGATCAGCCACCAGTCTTTGACTGTG
AGCATTATGCATCGCTGTAAACAATGTCCTAGTCAAAGTTTATTTATTTA
CCATTCTTCTATACGCATTTCTTTGTGTCTATATTTCATGGATAAATTTT
TATCCACCACTATCTACTGTTTATGAGTCAATCAAATCCATTTTATATCC
TAATAAAGTGAGGCctaaaacgaacaaaaaaagaataatgCATGACGGGG
TCGAAAACCACGTCTTTGGAAAACAGAATCTAATTATATTTGAAGGGGGA
TGGTTTTTCGGTTCGAATTTCAGCTCCTTCCAATATTTCATTCGGCTTAT
TACAGATAGCCAAGCCGGCTGA Run BLAST on NCBI transcript from alignment at sc0000670:92090..94265+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028192 ID=TCONS_00028192|Name=TCONS_00028192|organism=Clytia hemisphaerica|type=transcript|length=2176bp|location=Sequence derived from alignment at sc0000670:92090..94265+ (Clytia hemisphaerica)
cccttagagagactttgaaaggtgaaaaaccgacccttaccgtccgtata
cccagcacccatttttgccaaAGCACCCGGGCAATTTGGAAGACTTGCAT
TTCAATTTTGCATTGATATTGTGAattcttttttacattttaactATTGC
ATAAAAATCCCATTATATACACATATATTCCAACGAAATAAATAACTGTA
CTGTATAATATACAAAATAATTTAGGGTCAATAAGgtttatttttaatta
taaaaacTAGTTAACGTTGATTACTCTCTGAATGAGTTAAAAATGACACG
ATGAAGTTTGGTTTTTCTCTTAGTGCAGATCGggtagatttttcactaaa
cAATATAACTAGAGACAGTTCTCGTCGTTGCAAACGTCTGGTTAATACGC
TTGAAATAAATAACTTAGTCTGATAAGGAACATATTAGGCAGAGGAGCGA
CAATCATGGAATGTGACGCcctgaaaagatattttatccCTCAAAAGACC
CCTAAAGACCATATTATCGACTTAATTGAGAAGTTTACTAAACACCTATT
GCAGAGCTGCTAATCAAcctgaaaattaattatttttgaaattatttcaa
ccaaaatttcacgTCAAAAGCCTTTAGGAACGTGAAGacaacattttttt
attctttcataaCAAATGCCAGATAGATTAGCCAATCGCCTTGCACAGTT
GCAACCTCTCTATTGTCTCGAAATCCCCACGTGGCTTCTGTATGTCGAAC
CAAGATGGTCGTTTTCGTATTATCTGAAGGATGAAGAATTTTGACGCATT
TCAGATTCATGAAACATCTCCAACCTAAATCAGAAGGCTTAATGTAATCT
TGGATTCTGAAGGAACGATAAACAAGATTTGTCAAAGGTTGTCGATCGCA
AATAATCTTGAAGATTAAGACATCTTTGGTTAAGAAACTGGTTTCGATTT
TGTCGAACAAGGCTTTGTACCATCTAGCATAATTTGATGATTTCTCAGTT
TCAAAAACCANTAAGGTTTTGTACCATCTAGCATAATTTGATGATTTCTC
AGTTTCAAAAACCATTTTGGAACCAAGTGTTATGATGAGAGACAAGTCAG
ATGACATTTGGCTTGAGCtcaaaaagccatttttcaaattttcattctcC
TGTTGTaagctttcgatttcaagcttTAAGCGACAATtactgttttcttt
tttgtttaaagTTTCATTCAATCTTTTATTCTCAATCCTCAAAATCTCAA
GCTCGTTGTCATTCTCGAATGAGCCCTCCTCATTTTGTTTGCCACCGTTA
CTTTTCTTgacttcatttttcatttttccaagttCAGCTTCGAATTTCGT
TCTCTCAACTCCAGACGCACTGTCCACAAACTCCGCTTGACTTTCCTTCA
ATAAGACATTCTCCTTTTCCAGAAATTCCTTCTCAGCTTTAAGTATTTTC
AAGTTCTCCTCAACTTtcaatttctcatttttaagaACTTTCAACGAATC
ACCGTACTGTTTCTCAGCTTTCAGTAACAAATTCTCAGAACGTAATTTCA
GAATCTCATTTTCACTTTGCATTTGATCCTTGACCAACTCCAGCTGCTTT
AATTCACTatcttttctcaaattttcgttTTCGAGTTTCAATTTCTCAAG
TTCGTTCTTAATCTTCAAgttcttcaattcttctttataAACGTAAAGTT
GATTAATGCTTTCAGCCGTCCTAGAATCCCATTTATCAGACCCATCTGAA
TTCAAATCTTTTCGAAAACAAGCTGCATTCAAAATATGTTCCTTGGTCAC
ATCTTCCCGGACCCCTGCAGCATTGCAAGGATCAGCCACCAGTCTTTGAC
TGTGAGCATTATGCATCGCTGTAAACAATGTCCTAGTCAAAGTTTATTTA
TTTACCATTCTTCTATACGCATTTCTTTGTGTCTATATTTCATGGATAAA
TTTTTATCCACCACTATCTACTGTTTATGAGTCAATCAAATCCATTTTAT
ATCCTAATAAAGTGAGGCctaaaacgaacaaaaaaagaataatgCATGAC
GGGGTCGAAAACCACGTCTTTGGAAAACAGAATCTAATTATATTTGAAGG
GGGATGGTTTTTCGGTTCGAATTTCAGCTCCTTCCAATATTTCATTCGGC
TTATTACAGATAGCCAAGCCGGCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028192-exon-sc0000670-1491911889:92090..93050 | TCONS_00028192-exon-sc0000670-1491911889:92090..93050 | Clytia hemisphaerica | exon |
| TCONS_00028192-exon-sc0000670-1510915933:92090..93050 | TCONS_00028192-exon-sc0000670-1510915933:92090..93050 | Clytia hemisphaerica | exon |
| TCONS_00028192-exon-sc0000670-1575043694:92090..93050 | TCONS_00028192-exon-sc0000670-1575043694:92090..93050 | Clytia hemisphaerica | exon |
| TCONS_00028192-exon-sc0000670-1491911889:93105..94265 | TCONS_00028192-exon-sc0000670-1491911889:93105..94265 | Clytia hemisphaerica | exon |
| TCONS_00028192-exon-sc0000670-1510915933:93105..94265 | TCONS_00028192-exon-sc0000670-1510915933:93105..94265 | Clytia hemisphaerica | exon |
| TCONS_00028192-exon-sc0000670-1575043694:93105..94265 | TCONS_00028192-exon-sc0000670-1575043694:93105..94265 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000670 | supercontig | sc0000670:92090..94265 + |
Blast
The following BLAST results are available for this feature:
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