TCONS_00028175 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028175
Unique NameTCONS_00028175
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2901

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028175 ID=TCONS_00028175|Name=TCONS_00028175|organism=Clytia hemisphaerica|type=transcript|length=2901bp
AGTAATTGTAAGAAAATTAAAGTATGGCAGAAAACCCTGAACAACCCCCA
CCACTAGAACGCGGATACGACTTTGTGCTGGTAGTGAAAGAACAAGGGGT
GGATTTCGAATGTTCTATTTGTCGATCGATTCTCCGTGACGCACACTCCA
CACCGTGCCATCATGCTTTTTGTCGTAATTGTTTGGCTACTTGGACCAAA
GAGCTGGAACAAGGGAACAGACCAATCACTTGTCCCAATTGCAATTTGAT
CTTTGACCCTAAAAAGGTGTGTATTATAAAGACAAAtaagacagacagac
agacatggTCAAAGCAAAGATTCAATAACATCGATCAACATCAAATAATT
TCATTCTTAGGTCCAATACAATGGATTTGTAGATCGAATGGTGAAAACCA
GTCTAGAGATCAAATGTAAACAAGAGGATAAGGGATGTCACTGGCAAGGA
GAAATCATCGACTATCAGGATCACCAAGGCACGTGTGATTACGAGTTGGT
CGAATGTCAAAACAAAGGATGTCGGGAAGTATTGTCGAGAAAAGAATTGG
TGCAACATCAAAAGGATTGTAAATATCGAACGACTGAATGCCTCTATTGT
AGGCTGATAAAGCCAATAATTGAAATGAAGGTATATAATTGAACACTAGT
CTCAACTGAGACATTTTGGGtcgattttttacatgaatggGCTAGTAATC
TAGGAAGTTATGAAAATCTCTCGATTGTTTTAAGGGGTTCCCAACCAGCC
AGTTCGGCTGTTTATAGCCTTCCTTAACAGTACATTGGAAGTAGGAATCT
CAGAAAATTCCACGCTGTCTCTGTCATCACGCACGGTATATCCAGCGGGA
GGAGTCTGCAAGGAGATCAAACCACGAAGTAACTGTAGGTATAATCTTTC
TTACAATCCTAACCATGGATCAAAtgtattgaaattgaaaagagaacGCT
TTTTAACAGGACCACCATTCCGAATGCCAGATGATGAAAATTATTTGCCC
AAATGAACAATGTGAAACTCAAGTGCTGCGCAAAGATATCAAAGAGCATT
TGAACAAAGATTGCCTTTATGAGAAAATTTCATGCTGCTATTCTGAGATT
GGTTGCCAGAAAAAGGTGGAACGTTGTTTGATGGCTATCCATCAGAAAGA
TTTCCTTGTGGAACATCAAATGATGATTTTCCAAGACAACAAGAAAGTCC
AGCAATCACTTCTggagaaaaataaacaactggaaGATGATTTGAAGGCg
gaaaagaaaaagaacgaGAAATTGAAGGGAGAAATGGAAGTGATCaaaaa
gaaagttgaaaatttggaaCAAGAACAACAAAGATGCAATGAACTTCACC
GAAACATCTTTTCAATCATTGATACGCTCATTTATTGGGTATCAAAAGGC
TTCAAAAGCAAAGAGAAGGTCATcaaagttttggggaaaatccaATTGTC
TCATCTCATAAAGGGGCAATATAATTTACTTGGACGGATTGTCCCGTCNT
TGTCTCATCTCATAAAGGGACAATATAATTTACTTGGACGGATTGTCCCG
TCAACTCCTTTCAAATTCATGTCATTCTTCAGCACAACTTTTGTCAACGA
AAAATACAAATGTTTTGAGCTTAAGGGTAAAGAAAAGAGTTTTAGCCGAA
TCATTTTCAAACATGTTCTACGTGACATGAAATTCAATCAAATGTATCAG
ACAGGTTCATTTGTCATGGTCAAaataagattatttctcattgAGAGAGA
ATACAAAGTCAAGTACGTGGATAAAAAAGAATTTACAGAATTGAGTAGAC
AAGCCAACGATTTCAGAAATAACAACGTGGTCTTCAGTTTTCAAGGAAAT
CGAACAATCTTTTTATACCACCCAGATATTTCATCCATGAATGTAAAAAT
CTGTGTTATCAGAAATAGCCGGTTGACAAGTGAAACATTTGCATTAAACG
ATGAATCCTGTGCAGGCGATTTCGCCGATTGTTGCCTTGAACATATCGAT
GGGAATGAATTTCAATTTAACTGCCATAATGCTGAAAAACAGTTTATCTT
ACTGGTACTTTATACATAACATTTTGTGCTCTCATCAGCTCGACATTTTG
GagtaaaaaggaaaatttcgtGTGCACACTTAAGGTCCATGGAGGATTAC
ATCATCGAAAAAACACTTTTGCGTcaatttatttaattattcTATCAAGT
AGTATTCTAGAGGTACTGTCATTGACAATCGACGGTTCAGATCATTACTG
AAATTTTGCCGGAAATTTTACCATAATTAATTGACAACCAGGATAGAAAC
AACTTAAGGCTTTCAGTTAGCAGGTTTATAAACTCTATTATTTCTGGTCA
CGGGATCAATATCGATGGGCATCTACAGTCGTTTTGCTGGTTGACGTCGC
ATTGTCATTCCACTGCAACGACCTCCCAAATATTATTGACGAAATTTACC
TGAtaccaaatatttttttgtaattaatttGTAATTAAACTGAACGATGA
AATAGCTTTTGAAACATACCTGGTACTCGGTGAGGTAGAATCCTTTGACG
ACTCCTTCATCGATGATACCCAAATAAACTGTCCCTCCTCGACCAGAGTT
CAGAAATGCATTCAACGCCCtgtacaaaaatataaataaaatgttgAGTC
ATTCTTGTCCATTTAATGGCATGTACATAACTaacaaaatctagaaaatt
tctAGTGATTAAAAAATATCCTTTCACCCTTTTGCCTGTTGAACAGATCA
TGATAAGCAGATATTGCATGGCCTTTTTCAGGTATTGCGATTTATTAGCT
CGAGGTTAGATGTCAACAAAGCCAAGTGGATTTGAATATCATTTGAgagt
taataaatccaatatcTGATAAAAGCAGACATCATTATTGTACCATACAG
G
Run BLAST on NCBI

transcript from alignment at sc0000667:81019..84987-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028175 ID=TCONS_00028175|Name=TCONS_00028175|organism=Clytia hemisphaerica|type=transcript|length=3969bp|location=Sequence derived from alignment at sc0000667:81019..84987- (Clytia hemisphaerica)
AGTAATTGTAAGAAAATTAAAGTATGGCAGAAAACCCTGAACAACCCCCA
CCACTAGAACGCGGATACGACTTTGTGCTGGTAGTGAAAGAACAAGGGGT
GGATTTCGAATGTTCTATTTGTCGATCGATTCTCCGTGACGCACACTCCA
CACCGTGCCATCATGCTTTTTGTCGTAATTGTTTGGCTACTTGGACCAAA
GAGCTGGAACAAGGGAACAGGTAAGCACTTTCACTCATTCTATGTTATCT
TACTTTGCTAGCCTTAAAAAGTTTTTCTTTCTGATATTATAAAAGCATTT
CGATCTAGATGAACTTAGTTTTCTCAAATTAAAATTAGAGAATTACAAAC
AACACAGCTAAAAAAGCCTGCCACAAAATTATAGACTCGATTAGTGTATA
GACTGCAGTGTCTCTTTTAATTCTAAACTCTATAAATCAAACGCCTCCTG
AACTCGAAAAGTTTTCTAAGCCCTTCAGTTAACATTGCCCTATAAACCTT
ACTCCATAACTCAAACTCCACTGTATATCTTCTACTTTATAGACCAATCA
CTTGTCCCAATTGCAATTTGATCTTTGACCCTAAAAAGGTGTGTATTATA
AAGACAAATAAGACAGACAGACAGACATGGTCAAAGCAAAGATTCAATAA
CATCGATCAACATCAAATAATTTCATTCTTAGGTCCAATACAATGGATTT
GTAGATCGAATGGTGAAAACCAGTCTAGAGATCAAATGTAAACAAGAGGA
TAAGGGATGTCACTGGCAAGGAGAAATCATCGACTATCAGGTCCCAAGAT
TATTTCTATACTGCAATATCTTAACTGTAAAATGAAAGGCCCAAAAATCC
AAGTTAAATTTAAAAAATGAAACAGGTCGAATATTTTGCCACCTTTTCTT
ATAGATCCAGAATTACAAAGAATTTTAAAATCAAGTCTCCTAAGAATTAC
TACCACGACTGAAGGTCTAAGACTACCAGGTCACCAGCATCAACTTTGCA
TTTTAGGATCACCAAGGCACGTGTGATTACGAGTTGGTCGAATGTCAAAA
CAAAGGATGTCGGGAAGTATTGTCGAGAAAAGAATTGGTGCAACATCAAA
AGGATTGTAAATATCGAACGACTGAATGCCTCTATTGTAGGCTGATAAAG
CCAATAATTGAAATGAAGGTATATAATTGAACACTAGTCTCAACTGAGAC
ATTTTGGGTCGATTTTTTACATGAATGGGCTAGTAATCTAGGAAGTTATG
AAAATCTCTCGATTGTTTTAAGGGGTTCCCAACCAGCCAGTTCGGCTGTT
TATAGCCTTCCTTAACAGTACATTGGAAGTAGGAATCTCAGAAAATTCCA
CGCTGTCTCTGTCATCACGCACGGTATATCCAGCGGGAGGAGTCTGCAAG
GAGATCAAACCACGAAGTAACTGTAGGTATAATCTTTCTTACAATCCTAA
CCATGGATCAAATGTATTGAAATTGAAAAGAGAACGCTTTTTAACAGGAC
CACCATTCCGAATGCCAGATGATGAAAATTATTTGCCCAAATGAACAATG
TGAAACTCAAGTGCTGCGCAAAGATGTAAGAGTTTTACCAAAAGGATTTC
AAACAATTTGGTTCTCACTTTGGATATTCTTAAATTCAAAGCTTTCGTCT
TGTTAATTTAGGGCTATCAACCAACTTGAAAATGGATGAACTCCTACTTC
GTAAGGATATGAGCCGTTCTTCAATGGGAACAGCTCGTATCGTATCATAT
AATCAAATATGAAATGAAACATTTCTTGGAAACTGTTTTTCACACCTACT
CCACGCCTTTCTTTTCTACAGATCAAAGAGCATTTGAACAAAGATTGCCT
TTATGAGAAAATTTCATGCTGCTATTCTGAGATTGGTTGCCAGAAAAAGG
TTAGAAATAATAGTACGTAAGTCAACTCTTTCCGAAATTTTTTAATTNAA
AAAGGTTAGAATATAATAGTACATAACTCAACTCTTTCCGAAATTTTTTA
ATTGCGAACAGCACAGAAAATGAAAATTTCTCCAGACCAATTTCGTCCTA
AAATATATTTTCCCAAATCTTAGATTTTTTGCACCTCACATCCAAGTTAG
CCACTACATTGACATTGCATTTCCAGAGCTTGAAGCTTTATTGACTGAAT
CATGCAATTGAAGAAATGTTTTCCTTCTTCGAGGTGGAACGTTGTTTGAT
GGCTATCCATCAGAAAGATTTCCTTGTGGAACATCAAATGATGATTTTCC
AAGACAACAAGAAAGTCCAGCAATCACTTCTGGAGAAAAATAAACAACTG
GAAGATGATTTGAAGGCGGAAAAGAAAAAGAACGAGAAATTGAAGGGAGA
AATGGAAGTGATCAAAAAGAAAGTTGAAAATTTGGAACAAGAACAACAAA
GATGCAATGAACTTCACCGAAACATCTTTTCAATCATTGATACGCTCATT
TATTGGGTATCAAAAGGCTTCAAAAGCAAAGAGAAGGTCATCAAAGTTTT
GGGGAAAATCCAATTGTCTCATCTCATAAAGGGGCAATATAATTTACTTG
GACGGATTGTCCCGTCNTTGTCTCATCTCATAAAGGGACAATATAATTTA
CTTGGACGGATTGTCCCGTCAACTCCTTTCAAATTCATGTCATTCTTCAG
CACAACTTTTGTCAACGAAAAATACAAATGTTTTGAGCTTAAGGGTAAAG
AAAAGAGTTTTAGCCGAATCATTTTCAAACATGTTCTACGTGACATGAAA
TTCAATCAAATGTATCAGACAGGTTCATTTGTCATGGTCAAAATAAGATT
ATTTCTCATTGAGAGAGAATACAAAGTCAAGTACGTGGATAAAAAAGAAT
TTACAGAATTGAGTAGACAAGCCAACGATTTCAGAAATAACAACGTGGTC
TTCAGTTTTCAAGGAAATCGAACAATCTTTTTATACCACCCAGATATTTC
ATCCATGAATGTAAAAATCTGTGTTATCAGAAATAGCCGGTTGACAAGTG
AAACATTTGCATTAAACGATGAATCCTGTGCAGGCGATTTCGCCGATTGT
TGCCTTGAACATATCGATGGGAATGAATTTCAATTTAACTGCCATAATGC
TGAAAAACAGTTTATCTTACTGGTACTTTATACATAACATTTTGTGCTCT
CATCAGCTCGACATTTTGGAGTAAAAAGGAAAATTTCGTGTGCACACTTA
AGGTCCATGGAGGATTACATCATCGAAAAAACACTTTTGCGTCAATTTAT
TTAATTATTCTATCAAGTAGTATTCTAGAGGTACTGTCATTGACAATCGA
CGGTTCAGATCATTACTGAAATTTTGCCGGAAATTTTACCATAATTAATT
GACAACCAGGATAGAAACAACTTAAGGCTTTCAGTTAGCAGGTTTATAAA
CTCTATTATTTCTGGTCACGGGATCAATATCGATGGGCATCTACAGTCGT
TTTGCTGGTTGACGTCGCATTGTCATTCCACTGCAACGACCTCCCAAATA
TTATTGACGAAATTTACCTGATACCAAATATTTTTTTGTAATTAATTTGT
AATTAAACTGAACGATGAAATAGCTTTTGAAACATACCTGGTACTCGGTG
AGGTAGAATCCTTTGACGACTCCTTCATCGATGATACCCAAATAAACTGT
CCCTCCTCGACCAGAGTTCAGAAATGCATTCAACGCCCTGTACAAAAATA
TAAATAAAATGTTGAGTCATTCTTGTCCATTTAATGGCATGTACATAACT
AACAAAATCTAGAAAATTTCTAGTGATTAAAAAATATCCTTTCACCCTTT
TGCCTGTTGAACAGATCATGATAAGCAGATATTGCATGGCCTTTTTCAGG
TATTGCGATTTATTAGCTCGAGGTTAGATGTCAACAAAGCCAAGTGGATT
TGAATATCATTTGAGAGTTAATAAATCCAATATCTGATAAAAGCAGACAT
CATTATTGTACCATACAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015947XLOC_015947Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028175-exon-sc0000667-1575043694:84768..84987TCONS_00028175-exon-sc0000667-1575043694:84768..84987Clytia hemisphaericaexon
TCONS_00028175-exon-sc0000667-1575043694:84198..84445TCONS_00028175-exon-sc0000667-1575043694:84198..84445Clytia hemisphaericaexon
TCONS_00028175-exon-sc0000667-1575043694:83413..83981TCONS_00028175-exon-sc0000667-1575043694:83413..83981Clytia hemisphaericaexon
TCONS_00028175-exon-sc0000667-1575043694:83089..83166TCONS_00028175-exon-sc0000667-1575043694:83089..83166Clytia hemisphaericaexon
TCONS_00028175-exon-sc0000667-1575043694:81019..82804TCONS_00028175-exon-sc0000667-1575043694:81019..82804Clytia hemisphaericaexon
TCONS_00028175-exon-sc0000667-1510915933:84768..84987TCONS_00028175-exon-sc0000667-1510915933:84768..84987Clytia hemisphaericaexon
TCONS_00028175-exon-sc0000667-1510915933:84198..84445TCONS_00028175-exon-sc0000667-1510915933:84198..84445Clytia hemisphaericaexon
TCONS_00028175-exon-sc0000667-1510915933:83413..83981TCONS_00028175-exon-sc0000667-1510915933:83413..83981Clytia hemisphaericaexon
TCONS_00028175-exon-sc0000667-1510915933:83089..83166TCONS_00028175-exon-sc0000667-1510915933:83089..83166Clytia hemisphaericaexon
TCONS_00028175-exon-sc0000667-1510915933:81019..82804TCONS_00028175-exon-sc0000667-1510915933:81019..82804Clytia hemisphaericaexon
TCONS_00028175-exon-sc0000667-1491911889:84768..84987TCONS_00028175-exon-sc0000667-1491911889:84768..84987Clytia hemisphaericaexon
TCONS_00028175-exon-sc0000667-1491911889:84198..84445TCONS_00028175-exon-sc0000667-1491911889:84198..84445Clytia hemisphaericaexon
TCONS_00028175-exon-sc0000667-1491911889:83413..83981TCONS_00028175-exon-sc0000667-1491911889:83413..83981Clytia hemisphaericaexon
TCONS_00028175-exon-sc0000667-1491911889:83089..83166TCONS_00028175-exon-sc0000667-1491911889:83089..83166Clytia hemisphaericaexon
TCONS_00028175-exon-sc0000667-1491911889:81019..82804TCONS_00028175-exon-sc0000667-1491911889:81019..82804Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000667supercontigsc0000667:81019..84987 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.192202	0.44633	0.654997	0.304798	0.444268	0.285612	0.170388	0	0	1.03463	0	0.509196	0.467467	0.301222	0.326072	0.0840449	0.435792	0.498283	0.927184	0.119236	0	0	0.145827	0.0861531	0	0	0	0	0.13839
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028175 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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