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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028167 ID=TCONS_00028167|Name=TCONS_00028167|organism=Clytia hemisphaerica|type=transcript|length=4725bpRun BLAST on NCBI protein sequence of TCONS_00028167-protein >TCONS_00028167-protein ID=TCONS_00028167-protein|Name=TCONS_00028167-protein|organism=Clytia hemisphaerica|type=polypeptide|length=355bp MESLVDKVDAKNISAGELNDLIMKTSKPFIITNSIEHWEARKWSLTNFTERun BLAST on NCBI transcript from alignment at sc0000667:103291..125809+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00028167 ID=TCONS_00028167|Name=TCONS_00028167|organism=Clytia hemisphaerica|type=transcript|length=22519bp|location=Sequence derived from alignment at sc0000667:103291..125809+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000667:103291..125809+ >TCONS_00028167 ID=TCONS_00028167|Name=TCONS_00028167|organism=Clytia hemisphaerica|type=CDS|length=7476bp|location=Sequence derived from alignment at sc0000667:103291..125809+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00028167 vs. Swiss-Prot (Human)
Match: HBAP1 (HSPB1-associated protein 1 OS=Homo sapiens GN=HSPBAP1 PE=1 SV=1) HSP 1 Score: 217.238 bits (552), Expect = 7.211e-60 Identity = 117/292 (40.07%), Postives = 168/292 (57.53%), Query Frame = 1
Query: 1081 DLIMKTSKPFIITNSIEHWEARKWSLTNFTELFGKVQTRFKMYKKKTHIRQSKRQKIGHEEYVP-METECVYQNSSFQDFQGWLNGKKNSLS---EKHPREEYWCYADYNYMAELFNNDEMILNAVDWSPFGFPQRNGRQSTIWIGSEGAFTPCHQDTYGLNLVAQIDGVKRWLLIPPSERKHVRPLRIPYEESSVFTRMN--SEQLKVMDKCVQ-----VYLQPGEVLVVPKHWWHYVENVVP-SLSINTWIELDSDKVDRIDEALTQTLVYTFDKS-NDSESNDWINPGQ 1917
++IM +P I N + W AR W+ +++ Q RF+M K VP ET C Y ++ ++F W N ++S+S + ++W YADY Y LF + + V WS FGFP RNG++ST+WIGS GA TPCH D+YG NLV Q+ G KRW L PP + + P RIPYEESSVF+++N + LK + + V L PG+VL VP+HWWHYVE++ P ++SIN+WIEL+ D + R++EA+T+ LV + N + W+NP +
Sbjct: 35 EIIMSLQQPAIFCNMVFDWPARHWNAKYLSQVLHGKQIRFRMGMKSMST-------------VPQFETTCNYVEATLEEFLTW-NCDQSSISGPFRDYDHSKFWAYADYKYFVSLFEDKTDLFQDVKWSDFGFPGRNGQESTLWIGSLGAHTPCHLDSYGCNLVFQVQGRKRWHLFPPEDTPFLYPTRIPYEESSVFSKINVVNPDLKRFPQFRKAQRHAVTLSPGQVLFVPRHWWHYVESIDPVTVSINSWIELEEDHLARVEEAITRMLVCALKTAENPQNTRAWLNPTE 312 The following BLAST results are available for this feature:
BLAST of TCONS_00028167 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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