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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028165 ID=TCONS_00028165|Name=TCONS_00028165|organism=Clytia hemisphaerica|type=transcript|length=1982bp
GTCAAAGTTTTTATTGTGGTGTTGTTGACTTTGACAGTTTGGTCATTGAt
cagaaaaacaatgatgaaatcaattcATCCTTATTTTGATTCTAATGATA
TCGAACAAGAAGATGAGGAGATAGAATATGGTGAATCACTTGAATCTCTC
AAAACCATTCTCGATGAAACGTATGTCTCAGTCATCAAAATATTAGATGA
ATCAGAATCAGCTAAATCGGTTATTGAGTTGGAGAAAGGATTAAAACACC
TGAAAGAAGCtatcaaacaaagaaatgtgTTAGCTGGAGAAGATCCAGGT
CGTTTacccaaaattgaaaaagtaaagaaagaaatgaaagatCCTGGGGA
AATATGCCCAGAAAAATACCAAGGTGCAAAACAAGATTATCCACTATATT
TGAACCaatgatgaaatcaattcATCCTTATTTTGATTCTAATGATATCG
AACAAGAAGATGAGGAGATAGAATATGGTGAATCACTTGAATCTCTCAAA
ACCATTCTCGATGAAACGTATGTCTCAGTCATCAAAATATTAGATGAATC
AGAATCAGCTAAATCGGTTATTGAGTTGGAGAAAGGATTAAAACACCTGA
AAGAAGCtatcaaacaaagaaatgtgTTAGCTGGAGAAGATCCAGGTCGT
TTacccaaaattgaaaaagtaaagaaagaaatgaaagatCCTGGGGAAAT
ATGCCCAGAAAAATACCAAGGTGCAAAACAAGATTATCCACTATATTTGA
ACCATATCCCTTTAGATCCAACATGTAAAGTTGCTCCCCTTAACTCACTT
GTCACCGTCACTTTCAACTTTGTCAATGAAATACCGGCCACGCAAGCTGA
AGAATTGTTTGAAGATGCAGCTTTTGGTATGTATAAGAATATGACTTTCC
TAGCTTTCCTTAAGAAAGGTGCAAAAGAAATTCCTAAACTGAAAGATATT
GCCAAAGTTAAGCTGCCCAACATGCATATCATAGAGCAAGAAGAAACCTC
TCAAACCCATGCTGACGTTTTAGAAGAGATGGCTAAGAGTGTCAAAACGA
AATATGTTGTGTTAACAAGAAACATTGAACGTTTTGATAACTTCTCAACT
ATCATTCGACTTGTGCGTGATATCAGCCTGGGTAAGGCTGAAATAGTTGC
TGGATCTCATCGAAACACCTCTGGTCATTGGAGGGCAGGTTGCTATCAAA
TGAAGCAACGACTTGGAGAAATGGCTCTTGATGaagggtatgacttttct
gATAATGGATGCATGTTTTGTGATTATGTAAGCGGTCCATTTGGTATCAA
AACTGAAGTTTTGTTGAAATACCTTGAAACAGTCAAAGAATCTCCTTTGA
AAACCTACCAATTCTACATGGAAATGTTTTTCCACTTTCGTCTACAAATG
AGAAAGAAGATTTTGATGTGTATTGATTCCATGTTTTACACTGTCACCTC
TGGTTTGCTTCCTCGTGATAAAGCAGCTTGGATGCCTTACTTAAAGAGAA
ACAAAATCAGTAAAATGGTTTTTCCAAGGAAGGTGGTTACGCATGAAGCG
ACTTGTAAGGAAGTAGAATTGCAATGCATCCCTGATAAAGAGAAAAATCT
TCCCTTCTGCTGTTATCGAGAAATTGAAGAGGTcttactagacggttccc
gtcgtcgcaaacgccggttaacggttttgcttgcacatgaaaagccttta
aaatacgataatgtgggttaattcctgacatcgttttggcttaaaatgcc
gaatacaataaaaaaaattatacttctaaactttttaCATTAGTCAAcat
tttgtgtctgtaagcctcgattATATGTCTTTTTAAGGTAACGcaagttt
gtgttcaatgaaatgccatagtgaccctgcCAAAATTATggagggtaccc
gtcgttgcagacgcccaaaggtgtccgaggtggtgagagggttgcttcta
ggaaagaaaaagccttagttgtgaaggagagg Run BLAST on NCBI protein sequence of TCONS_00028165-protein >TCONS_00028165-protein ID=TCONS_00028165-protein|Name=TCONS_00028165-protein|organism=Clytia hemisphaerica|type=polypeptide|length=455bp
MPRKIPRCKTRLSTIFEPMMKSIHPYFDSNDIEQEDEEIEYGESLESLKT
ILDETYVSVIKILDESESAKSVIELEKGLKHLKEAIKQRNVLAGEDPGRL
PKIEKVKKEMKDPGEICPEKYQGAKQDYPLYLNHIPLDPTCKVAPLNSLV
TVTFNFVNEIPATQAEELFEDAAFGMYKNMTFLAFLKKGAKEIPKLKDIA
KVKLPNMHIIEQEETSQTHADVLEEMAKSVKTKYVVLTRNIERFDNFSTI
IRLVRDISLGKAEIVAGSHRNTSGHWRAGCYQMKQRLGEMALDEGYDFSD
NGCMFCDYVSGPFGIKTEVLLKYLETVKESPLKTYQFYMEMFFHFRLQMR
KKILMCIDSMFYTVTSGLLPRDKAAWMPYLKRNKISKMVFPRKVVTHEAT
CKEVELQCIPDKEKNLPFCCYREIEEVLLDGSRRRKRRLTVLLAHEKPLK
YDNVG Run BLAST on NCBI transcript from alignment at sc0000667:69092..71573+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028165 ID=TCONS_00028165|Name=TCONS_00028165|organism=Clytia hemisphaerica|type=transcript|length=2482bp|location=Sequence derived from alignment at sc0000667:69092..71573+ (Clytia hemisphaerica)
GTCAAAGTTTTTATTGTGGTGTTGTTGACTTTGACAGTTTGGTCATTGAt
cagaaaaacaatgatgaaatcaattcATCCTTATTTTGATTCTAATGATA
TCGAACAAGAAGATGAGGAGATAGAATATGGTGAATCACTTGAATCTCTC
AAAACCATTCTCGATGAAACGTATGTCTCAGTCATCAAAATATTAGATGA
ATCAGAATCAGCTAAATCGGTTATTGAGTTGGAGAAAGGATTAAAACACC
TGAAAGAAGCtatcaaacaaagaaatgtgTTAGCTGGAGAAGATCCAGGT
CGTTTacccaaaattgaaaaagtaaagaaagaaatgaaagatCCTGGGGA
AATATGCCCAGAAAAATACCAAGGTGCAAAACAAGATTATCCACTATATT
TGAACCATATCCCTTTAGATCCAACATGTAAAGTTGCTCCCCTTAACTCA
CTTGTCACCGTCACTTTCAACTTTGTCAATGAAATACCGGCCACGCAAGC
TGAAGAATTGTTTGAAGATGCAGCTTTTGGTATGTATAAGAATATGACTT
TCCTAGCTTTCCTTAAGAAAGGTGCAAAAGAAATTCCTAAACTGAAAGAT
ATTGCCAAAGTTAAGCTGCCCAACATGCATATCATAGAGCAAGAAGAAAC
CTCTCAAACCCATGCTGACGTTTTGNTGTTTTTTACAATTTACTGACTTG
TGGGCCTAGATTTTGAATGGGTTGATTTTCAGCTGAATGCGATATTTTGT
GTTGATAAAACCAGGTACATCCATAAACATCACTTacctttctttcattt
tacagagtaaaaaatagaaatattttgaaatgtcgGTCTCAATTGCTGTC
AAAGTTTTTATTGTGGTGTTGTTGACTTTGACAGTTTGGTCATTGAtcag
aaaaacaatgatgaaatcaattcATCCTTATTTTGATTCTAATGATATCG
AACAAGAAGATGAGGAGATAGAATATGGTGAATCACTTGAATCTCTCAAA
ACCATTCTCGATGAAACGTATGTCTCAGTCATCAAAATATTAGATGAATC
AGAATCAGCTAAATCGGTTATTGAGTTGGAGAAAGGATTAAAACACCTGA
AAGAAGCtatcaaacaaagaaatgtgTTAGCTGGAGAAGATCCAGGTCGT
TTacccaaaattgaaaaagtaaagaaagaaatgaaagatCCTGGGGAAAT
ATGCCCAGAAAAATACCAAGGTGCAAAACAAGATTATCCACTATATTTGA
ACCATATCCCTTTAGATCCAACATGTAAAGTTGCTCCCCTTAACTCACTT
GTCACCGTCACTTTCAACTTTGTCAATGAAATACCGGCCACGCAAGCTGA
AGAATTGTTTGAAGATGCAGCTTTTGGTATGTATAAGAATATGACTTTCC
TAGCTTTCCTTAAGAAAGGTGCAAAAGAAATTCCTAAACTGAAAGATATT
GCCAAAGTTAAGCTGCCCAACATGCATATCATAGAGCAAGAAGAAACCTC
TCAAACCCATGCTGACGTTTTAGAAGAGATGGCTAAGAGTGTCAAAACGA
AATATGTTGTGTTAACAAGAAACATTGAACGTTTTGATAACTTCTCAACT
ATCATTCGACTTGTGCGTGATATCAGCCTGGGTAAGGCTGAAATAGTTGC
TGGATCTCATCGAAACACCTCTGGTCATTGGAGGGCAGGTTGCTATCAAA
TGAAGCAACGACTTGGAGAAATGGCTCTTGATGaagggtatgacttttct
gATAATGGATGCATGTTTTGTGATTATGTAAGCGGTCCATTTGGTATCAA
AACTGAAGTTTTGTTGAAATACCTTGAAACAGTCAAAGAATCTCCTTTGA
AAACCTACCAATTCTACATGGAAATGTTTTTCCACTTTCGTCTACAAATG
AGAAAGAAGATTTTGATGTGTATTGATTCCATGTTTTACACTGTCACCTC
TGGTTTGCTTCCTCGTGATAAAGCAGCTTGGATGCCTTACTTAAAGAGAA
ACAAAATCAGTAAAATGGTTTTTCCAAGGAAGGTGGTTACGCATGAAGCG
ACTTGTAAGGAAGTAGAATTGCAATGCATCCCTGATAAAGAGAAAAATCT
TCCCTTCTGCTGTTATCGAGAAATTGAAGAGGTcttactagacggttccc
gtcgtcgcaaacgccggttaacggttttgcttgcacatgaaaagccttta
aaatacgataatgtgggttaattcctgacatcgttttggcttaaaatgcc
gaatacaataaaaaaaattatacttctaaactttttaCATTAGTCAAcat
tttgtgtctgtaagcctcgattATATGTCTTTTTAAGGTAACGcaagttt
gtgttcaatgaaatgccatagtgaccctgcCAAAATTATggagggtaccc
gtcgttgcagacgcccaaaggtgtccgaggtggtgagagggttgcttcta
ggaaagaaaaagccttagttgtgaaggagagg Coding sequence (CDS) from alignment at sc0000667:69092..71573+ >TCONS_00028165 ID=TCONS_00028165|Name=TCONS_00028165|organism=Clytia hemisphaerica|type=CDS|length=2736bp|location=Sequence derived from alignment at sc0000667:69092..71573+ (Clytia hemisphaerica)
ATGCCCAGAAAAATACCAAGGTGCAAAACAAGATTATCCACTATATTTGA
ACCaatgatgaaatcaattcATCCTTATTTTGATTCTAATGATATCGAAC
AAGAAGATGAGGAGATAGAATATGGTGAATCACTTGAATCTCTCAAAACC
ATTCTCGATGAAACGTATGTCTCAGTCATCAAAATATTAGATGAATCAGA
ATCAGCTAAATCGGTTATTGAGTTGGAGAAAGGATTAAAACACCTGAAAG
AAGCtatcaaacaaagaaatgtgTTAGCTGGAGAAGATCCAGGTCGTTTa
cccaaaattgaaaaagtaaagaaagaaatgaaagatCCTGGGGAAATATG
CCCAGAAAAATACCAAGGTGCAAAACAAGATTATCCACTATATTTGAACC
ATATCCCTTTAGATCCAACATGTAAAGTTGCTCCCCTTAACTCACTTGTC
ACCGTCACTTTCAACTTTGTCAATGAAATACCGGCCACGCAAGCTGAAGA
ATTGTTTGAAGATGCAGCTTTTGGTATGTATAAGAATATGACTTTCCTAG
CTTTCCTTAAGAAAGGTGCAAAAGAAATTCCTAAACTGAAAGATATTGCC
AAAGTTAAGCTGCCCAACATGCATATCATAGAGCAAGAAGAAACCTCTCA
AACCCATGCTGACGTTTTAGAAGAGATGGCTAAGAGTGTCAAAACGAAAT
ATGTTGTGTTAACAAGAAACATTGAACGTTTTGATAACTTCTCAACTATC
ATTCGACTTGTGCGTGATATCAGCCTGGGTAAGGCTGAAATAGTTGCTGG
ATCTCATCGAAACACCTCTGGTCATTGGAGGGCAGGTTGCTATCAAATGA
AGCAACGACTTGGAGAAATGGCTCTTGATGaagggtatgacttttctgAT
AATGGATGCATGTTTTGTGATTATGTAAGCGGTCCATTTGGTATCAAAAC
TGAAGTTTTGTTGAAATACCTTGAAACAGTCAAAGAATCTCCTTTGAAAA
CCTACCAATTCTACATGGAAATGTTTTTCCACTTTCGTCTACAAATGAGA
AAGAAGATTTTGATGTGTATTGATTCCATGTTTTACACTGTCACCTCTGG
TTTGCTTCCTCGTGATAAAGCAGCTTGGATGCCTTACTTAAAGAGAAACA
AAATCAGTAAAATGGTTTTTCCAAGGAAGGTGGTTACGCATGAAGCGACT
TGTAAGGAAGTAGAATTGCAATGCATCCCTGATAAAGAGAAAAATCTTCC
CTTCTGCTGTTATCGAGAAATTGAAGAGGTcttactagacggttcccgtc
gtcgcaaacgccggttaacggttttgcttgcacatgaaaagcctttaaaa
tacgataatgtgggttaaATGCCCAGAAAAATACCAAGGTGCAAAACAAG
ATTATCCACTATATTTGAACCaatgatgaaatcaattcATCCTTATTTTG
ATTCTAATGATATCGAACAAGAAGATGAGGAGATAGAATATGGTGAATCA
CTTGAATCTCTCAAAACCATTCTCGATGAAACGTATGTCTCAGTCATCAA
AATATTAGATGAATCAGAATCAGCTAAATCGGTTATTGAGTTGGAGAAAG
GATTAAAACACCTGAAAGAAGCtatcaaacaaagaaatgtgTTAGCTGGA
GAAGATCCAGGTCGTTTacccaaaattgaaaaagtaaagaaagaaatgaa
agatCCTGGGGAAATATGCCCAGAAAAATACCAAGGTGCAAAACAAGATT
ATCCACTATATTTGAACCATATCCCTTTAGATCCAACATGTAAAGTTGCT
CCCCTTAACTCACTTGTCACCGTCACTTTCAACTTTGTCAATGAAATACC
GGCCACGCAAGCTGAAGAATTGTTTGAAGATGCAGCTTTTGGTATGTATA
AGAATATGACTTTCCTAGCTTTCCTTAAGAAAGGTGCAAAAGAAATTCCT
AAACTGAAAGATATTGCCAAAGTTAAGCTGCCCAACATGCATATCATAGA
GCAAGAAGAAACCTCTCAAACCCATGCTGACGTTTTAGAAGAGATGGCTA
AGAGTGTCAAAACGAAATATGTTGTGTTAACAAGAAACATTGAACGTTTT
GATAACTTCTCAACTATCATTCGACTTGTGCGTGATATCAGCCTGGGTAA
GGCTGAAATAGTTGCTGGATCTCATCGAAACACCTCTGGTCATTGGAGGG
CAGGTTGCTATCAAATGAAGCAACGACTTGGAGAAATGGCTCTTGATGaa
gggtatgacttttctgATAATGGATGCATGTTTTGTGATTATGTAAGCGG
TCCATTTGGTATCAAAACTGAAGTTTTGTTGAAATACCTTGAAACAGTCA
AAGAATCTCCTTTGAAAACCTACCAATTCTACATGGAAATGTTTTTCCAC
TTTCGTCTACAAATGAGAAAGAAGATTTTGATGTGTATTGATTCCATGTT
TTACACTGTCACCTCTGGTTTGCTTCCTCGTGATAAAGCAGCTTGGATGC
CTTACTTAAAGAGAAACAAAATCAGTAAAATGGTTTTTCCAAGGAAGGTG
GTTACGCATGAAGCGACTTGTAAGGAAGTAGAATTGCAATGCATCCCTGA
TAAAGAGAAAAATCTTCCCTTCTGCTGTTATCGAGAAATTGAAGAGGTct
tactagacggttcccgtcgtcgcaaacgccggttaacggttttgcttgca
catgaaaagcctttaaaatacgataatgtgggttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028165-exon-sc0000667-1491911889:69092..69497 | TCONS_00028165-exon-sc0000667-1491911889:69092..69497 | Clytia hemisphaerica | exon |
| TCONS_00028165-exon-sc0000667-1510915933:69092..69497 | TCONS_00028165-exon-sc0000667-1510915933:69092..69497 | Clytia hemisphaerica | exon |
| TCONS_00028165-exon-sc0000667-1575043694:69092..69497 | TCONS_00028165-exon-sc0000667-1575043694:69092..69497 | Clytia hemisphaerica | exon |
| TCONS_00028165-exon-sc0000667-1491911889:69998..71573 | TCONS_00028165-exon-sc0000667-1491911889:69998..71573 | Clytia hemisphaerica | exon |
| TCONS_00028165-exon-sc0000667-1510915933:69998..71573 | TCONS_00028165-exon-sc0000667-1510915933:69998..71573 | Clytia hemisphaerica | exon |
| TCONS_00028165-exon-sc0000667-1575043694:69998..71573 | TCONS_00028165-exon-sc0000667-1575043694:69998..71573 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000667 | supercontig | sc0000667:69092..71573 + |
Blast
The following BLAST results are available for this feature:
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