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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028164 ID=TCONS_00028164|Name=TCONS_00028164|organism=Clytia hemisphaerica|type=transcript|length=1874bp
gtaaaaatagaaatatttggAAATGTCGGTCTCAATTGGTGTCAAAGTTT
TTATTGTGGTGTTGTTGACTTTGACAGTTTGGTCATTGAtcagaaaaaca
atgatgaaatcaattcATCCTTATTTTGATTCTAATGATATCGAACAAGA
AGATGAGGAGATAGAATATGGTGAATCACTTGAATCTCTCAAAACCATTC
TCGATGAAACGTATGTCTCAGTCATCAAAATATTAGATGAATCAGAATCA
GCTAAATCGGTTATTGAGTTGGAGAAAGGATTAAAACACCTGAAAGAAGC
tatcaaacaaagaaatgtgTTAGCTGGAGAAGATCCAGGTCGTTTaccca
aaattgaaaaagtaaagaaagaaatgaaagatCCTGGGGAAATATGCCCA
GAAAAATACCAAGGTGCAAAACAAGATTATCCACTATATTTGAACCATAT
CCCTTTAGATCCAACATGTAAAGTTGCTCCCCTTAACTCACTTGTCACCG
TCACTTTCAACTTTGTCAATGAAATACCGGCCACGCAAGCTGAAGAATTG
TTTGAAGATGCAGCTTTTGGTATGTATAAGAATATGACTTTCCTAGCTTT
CCTTAAGAAAGGTGCAAAAGAAATTCCTAAACTGAAAGATATTGCCAAAG
TTAAGCTGCCCAACATGTAAAGTTGCTCCCCTTAACTCACTTGTCACCGT
CACTTTCAACTTTGTCAATGAAATACCGGCCACGCAAGCTGAAGAATTGT
TTGAAGATGCAGCTTTTGGTATGTATAAGAATATGACTTTCCTAGCTTTC
CTTAAGAAAGGTGCAAAAGAAATTCCTAAACTGAAAGATATTGCCAAAGT
TAAGCTGCCCAACATGCATATCATAGAGCAAGAAGAAACCTCTCAAACCC
ATGCTGACGTTTTAGAAGAGATGGCTAAGAGTGTCAAAACGAAATATGTT
GTGTTAACAAGAAACATTGAACGTTTTGATAACTTCTCAACTATCATTCG
ACTTGTGCGTGATATCAGCCTGGGTAAGGCTGAAATAGTTGCTGGATCTC
ATCGAAACACCTCTGGTCATTGGAGGGCAGGTTGCTATCAAATGAAGCAA
CGACTTGGAGAAATGGCTCTTGATGaagggtatgacttttctgATAATGG
ATGCATGTTTTGTGATTATGTAAGCGGTCCATTTGGTATCAAAACTGAAG
TTTTGTTGAAATACCTTGAAACAGTCAAAGAATCTCCTTTGAAAACCTAC
CAATTCTACATGGAAATGTTTTTCCACTTTCGTCTACAAATGAGAAAGAA
GATTTTGATGTGTATTGATTCCATGTTTTACACTGTCACCTCTGGTTTGC
TTCCTCGTGATAAAGCAGCTTGGATGCCTTACTTAAAGAGAAACAAAATC
AGTAAAATGGTTTTTCCAAGGAAGGTGGTTACGCATGAAGCGACTTGTAA
GGAAGTAGAATTGCAATGCATCCCTGATAAAGAGAAAAATCTTCCCTTCT
GCTGTTATCGAGAAATTGAAGAGGTcttactagacggttcccgtcgtcgc
aaacgccggttaacggttttgcttgcacatgaaaagcctttaaaatacga
taatgtgggttaattcctgacatcgttttggcttaaaatgccgaatacaa
taaaaaaaattatacttctaaactttttaCATTAGTCAAcattttgtgtc
tgtaagcctcgattATATGTCTTTTTAAGGTAACGcaagtttgtgttcaa
tgaaatgccatagtgaccctgcCAAAATTATggagggtacccgtcgttgc
agacgcccaaaggtgtccgaggtggtgagagggttgcttctaggaaagaa
aaagccttagttgtgaaggagagg Run BLAST on NCBI transcript from alignment at sc0000667:69052..71573+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028164 ID=TCONS_00028164|Name=TCONS_00028164|organism=Clytia hemisphaerica|type=transcript|length=2522bp|location=Sequence derived from alignment at sc0000667:69052..71573+ (Clytia hemisphaerica)
gtaaaaatagaaatatttggAAATGTCGGTCTCAATTGGTGTCAAAGTTT
TTATTGTGGTGTTGTTGACTTTGACAGTTTGGTCATTGAtcagaaaaaca
atgatgaaatcaattcATCCTTATTTTGATTCTAATGATATCGAACAAGA
AGATGAGGAGATAGAATATGGTGAATCACTTGAATCTCTCAAAACCATTC
TCGATGAAACGTATGTCTCAGTCATCAAAATATTAGATGAATCAGAATCA
GCTAAATCGGTTATTGAGTTGGAGAAAGGATTAAAACACCTGAAAGAAGC
tatcaaacaaagaaatgtgTTAGCTGGAGAAGATCCAGGTCGTTTaccca
aaattgaaaaagtaaagaaagaaatgaaagatCCTGGGGAAATATGCCCA
GAAAAATACCAAGGTGCAAAACAAGATTATCCACTATATTTGAACCATAT
CCCTTTAGATCCAACATGTAAAGTTGCTCCCCTTAACTCACTTGTCACCG
TCACTTTCAACTTTGTCAATGAAATACCGGCCACGCAAGCTGAAGAATTG
TTTGAAGATGCAGCTTTTGGTATGTATAAGAATATGACTTTCCTAGCTTT
CCTTAAGAAAGGTGCAAAAGAAATTCCTAAACTGAAAGATATTGCCAAAG
TTAAGCTGCCCAACATGCATATCATAGAGCAAGAAGAAACCTCTCAAACC
CATGCTGACGTTTTGNTGTTTTTTACAATTTACTGACTTGTGGGCCTAGA
TTTTGAATGGGTTGATTTTCAGCTGAATGCGATATTTTGTGTTGATAAAA
CCAGGTACATCCATAAACATCACTTacctttctttcattttacagagtaa
aaaatagaaatattttgaaatgtcgGTCTCAATTGCTGTCAAAGTTTTTA
TTGTGGTGTTGTTGACTTTGACAGTTTGGTCATTGAtcagaaaaacaatg
atgaaatcaattcATCCTTATTTTGATTCTAATGATATCGAACAAGAAGA
TGAGGAGATAGAATATGGTGAATCACTTGAATCTCTCAAAACCATTCTCG
ATGAAACGTATGTCTCAGTCATCAAAATATTAGATGAATCAGAATCAGCT
AAATCGGTTATTGAGTTGGAGAAAGGATTAAAACACCTGAAAGAAGCtat
caaacaaagaaatgtgTTAGCTGGAGAAGATCCAGGTCGTTTacccaaaa
ttgaaaaagtaaagaaagaaatgaaagatCCTGGGGAAATATGCCCAGAA
AAATACCAAGGTGCAAAACAAGATTATCCACTATATTTGAACCATATCCC
TTTAGATCCAACATGTAAAGTTGCTCCCCTTAACTCACTTGTCACCGTCA
CTTTCAACTTTGTCAATGAAATACCGGCCACGCAAGCTGAAGAATTGTTT
GAAGATGCAGCTTTTGGTATGTATAAGAATATGACTTTCCTAGCTTTCCT
TAAGAAAGGTGCAAAAGAAATTCCTAAACTGAAAGATATTGCCAAAGTTA
AGCTGCCCAACATGCATATCATAGAGCAAGAAGAAACCTCTCAAACCCAT
GCTGACGTTTTAGAAGAGATGGCTAAGAGTGTCAAAACGAAATATGTTGT
GTTAACAAGAAACATTGAACGTTTTGATAACTTCTCAACTATCATTCGAC
TTGTGCGTGATATCAGCCTGGGTAAGGCTGAAATAGTTGCTGGATCTCAT
CGAAACACCTCTGGTCATTGGAGGGCAGGTTGCTATCAAATGAAGCAACG
ACTTGGAGAAATGGCTCTTGATGaagggtatgacttttctgATAATGGAT
GCATGTTTTGTGATTATGTAAGCGGTCCATTTGGTATCAAAACTGAAGTT
TTGTTGAAATACCTTGAAACAGTCAAAGAATCTCCTTTGAAAACCTACCA
ATTCTACATGGAAATGTTTTTCCACTTTCGTCTACAAATGAGAAAGAAGA
TTTTGATGTGTATTGATTCCATGTTTTACACTGTCACCTCTGGTTTGCTT
CCTCGTGATAAAGCAGCTTGGATGCCTTACTTAAAGAGAAACAAAATCAG
TAAAATGGTTTTTCCAAGGAAGGTGGTTACGCATGAAGCGACTTGTAAGG
AAGTAGAATTGCAATGCATCCCTGATAAAGAGAAAAATCTTCCCTTCTGC
TGTTATCGAGAAATTGAAGAGGTcttactagacggttcccgtcgtcgcaa
acgccggttaacggttttgcttgcacatgaaaagcctttaaaatacgata
atgtgggttaattcctgacatcgttttggcttaaaatgccgaatacaata
aaaaaaattatacttctaaactttttaCATTAGTCAAcattttgtgtctg
taagcctcgattATATGTCTTTTTAAGGTAACGcaagtttgtgttcaatg
aaatgccatagtgaccctgcCAAAATTATggagggtacccgtcgttgcag
acgcccaaaggtgtccgaggtggtgagagggttgcttctaggaaagaaaa
agccttagttgtgaaggagagg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028164-exon-sc0000667-1491911889:69052..69715 | TCONS_00028164-exon-sc0000667-1491911889:69052..69715 | Clytia hemisphaerica | exon |
| TCONS_00028164-exon-sc0000667-1510915933:69052..69715 | TCONS_00028164-exon-sc0000667-1510915933:69052..69715 | Clytia hemisphaerica | exon |
| TCONS_00028164-exon-sc0000667-1575043694:69052..69715 | TCONS_00028164-exon-sc0000667-1575043694:69052..69715 | Clytia hemisphaerica | exon |
| TCONS_00028164-exon-sc0000667-1491911889:70364..71573 | TCONS_00028164-exon-sc0000667-1491911889:70364..71573 | Clytia hemisphaerica | exon |
| TCONS_00028164-exon-sc0000667-1510915933:70364..71573 | TCONS_00028164-exon-sc0000667-1510915933:70364..71573 | Clytia hemisphaerica | exon |
| TCONS_00028164-exon-sc0000667-1575043694:70364..71573 | TCONS_00028164-exon-sc0000667-1575043694:70364..71573 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000667 | supercontig | sc0000667:69052..71573 + |
Blast
The following BLAST results are available for this feature:
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