TCONS_00028156 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028156
Unique NameTCONS_00028156
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length359

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028156 ID=TCONS_00028156|Name=TCONS_00028156|organism=Clytia hemisphaerica|type=transcript|length=359bp
acgaatgaaagaagtagcaaaataggtgttttcttataattttttaactt
cgcATTTTCGAGTTAGGAAATCTTTTTGGGTAGCTAAAGCTAAAATTCAC
TTCGCATTTTGCGAAGTGCGAAGCTATAATTCATCCTCGCataaaaaaca
ctgtttttctataattcaaTCAAGCTGTGGTGTCAAACTGAACGAGACTA
TCTCTCTCTCTAACTTTTTCTTCCTTGAAAAGATCAATAATTATCTCACC
CTcaagaatttatttttggtaaacatagatacatagataaaATGGTCTAG
TGAAAACCAAAAAAGTTTGTGAAACGTAGCAATGAATGAATTCTCtgatg
aaaacaatg
Run BLAST on NCBI

transcript from alignment at sc0000665:182913..183271

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028156 ID=TCONS_00028156|Name=TCONS_00028156|organism=Clytia hemisphaerica|type=transcript|length=359bp|location=Sequence derived from alignment at sc0000665:182913..183271 (Clytia hemisphaerica)
cattgttttcatcaGAGAATTCATTCATTGCTACGTTTCACAAACTTTTT
TGGTTTTCACTAGACCATtttatctatgtatctatgtttaccaaaaataa
attcttgAGGGTGAGATAATTATTGATCTTTTCAAGGAAGAAAAAGTTAG
AGAGAGAGATAGTCTCGTTCAGTTTGACACCACAGCTTGAttgaattata
gaaaaacagtgttttttatGCGAGGATGAATTATAGCTTCGCACTTCGCA
AAATGCGAAGTGAATTTTAGCTTTAGCTACCCAAAAAGATTTCCTAACTC
GAAAATgcgaagttaaaaaattataagaaaacacctattttgctacttct
ttcattcgt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015938XLOC_015938Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028156-exon-sc0000665-1491911889:182913..183271TCONS_00028156-exon-sc0000665-1491911889:182913..183271Clytia hemisphaericaexon
TCONS_00028156-exon-sc0000665-1510915933:182913..183271TCONS_00028156-exon-sc0000665-1510915933:182913..183271Clytia hemisphaericaexon
TCONS_00028156-exon-sc0000665-1575043694:182913..183271TCONS_00028156-exon-sc0000665-1575043694:182913..183271Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000665supercontigsc0000665:182913..183271 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.570605	0.645171	0.775129	0	0.677205	0.26721	0.344953	1.02378	0	0.518786	0	0.92559	0	0.490075	0.289767	0.920791	0.432752	0	0.978311	0	1.28164	1.39913	0	0	0.266032	0.488983	0.40003	0	0.383675	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028156 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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