TCONS_00028154 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028154
Unique NameTCONS_00028154
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length566

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028154 ID=TCONS_00028154|Name=TCONS_00028154|organism=Clytia hemisphaerica|type=transcript|length=566bp
aaaaagttgatttttttcttcttcatttttcattttcaattttctttctt
ttttccaatttttttgcttgataatattccactaacaaatatcttttcaa
cgagcacaaaatcgcaacttgattcgaattctatgaaaagttacagccat
ttttgtgtcagctgcaaattattttgagaacactttaatttatgaaaagg
tctattgatcgAATCAAATGGTTTTTCATTTTCCGTGTTGTTTGAGATTT
TCGCTGTAGATTATGTacggcgtttgtgtgaaaacgaCACAGGCTTGTTT
ATGAAATAACTGGCTTTATTCCTATTTAGAAAATTCATTTCTAGCCTTGT
AGGCTTTTGCTTCATTGTCTCCCCTCCCCAAATAACAATTGATGACACTA
TTCGATGCTCACTAAACTATTGTTATCATATGAATTTTCAAGAAGAAAAG
AGCACATTATATTTTGCACAAATCGTTGTATAGGCTACAGTTATGTCATA
AAGTCAACTTATTTAGTATAATTAAATGAACCAGTTAAAACTCGCCTCTT
TTTCCACATGACCTGA
Run BLAST on NCBI

transcript from alignment at sc0000665:180159..180724

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028154 ID=TCONS_00028154|Name=TCONS_00028154|organism=Clytia hemisphaerica|type=transcript|length=566bp|location=Sequence derived from alignment at sc0000665:180159..180724 (Clytia hemisphaerica)
TCAGGTCATGTGGAAAAAGAGGCGAGTTTTAACTGGTTCATTTAATTATA
CTAAATAAGTTGACTTTATGACATAACTGTAGCCTATACAACGATTTGTG
CAAAATATAATGTGCTCTTTTCTTCTTGAAAATTCATATGATAACAATAG
TTTAGTGAGCATCGAATAGTGTCATCAATTGTTATTTGGGGAGGGGAGAC
AATGAAGCAAAAGCCTACAAGGCTAGAAATGAATTTTCTAAATAGGAATA
AAGCCAGTTATTTCATAAACAAGCCTGTGtcgttttcacacaaacgccgt
ACATAATCTACAGCGAAAATCTCAAACAACACGGAAAATGAAAAACCATT
TGATTcgatcaatagaccttttcataaattaaagtgttctcaaaataatt
tgcagctgacacaaaaatggctgtaacttttcatagaattcgaatcaagt
tgcgattttgtgctcgttgaaaagatatttgttagtggaatattatcaag
caaaaaaattggaaaaaagaaagaaaattgaaaatgaaaaatgaagaaga
aaaaaatcaacttttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015936XLOC_015936Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028154-exon-sc0000665-1491911889:180159..180724TCONS_00028154-exon-sc0000665-1491911889:180159..180724Clytia hemisphaericaexon
TCONS_00028154-exon-sc0000665-1510915933:180159..180724TCONS_00028154-exon-sc0000665-1510915933:180159..180724Clytia hemisphaericaexon
TCONS_00028154-exon-sc0000665-1575043694:180159..180724TCONS_00028154-exon-sc0000665-1575043694:180159..180724Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000665supercontigsc0000665:180159..180724 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.221236	0.0268609	0.11526	0	0	0	0	0.349965	0.437265	0	0.467354	0.1371	0	0.175159	0.19388	0	0.405972	0.211281	0.113593	1.35367	2.11416	0	0.107311	0.449051	0.520767	0	0	0.286385	0.311938
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028154 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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