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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028140 ID=TCONS_00028140|Name=TCONS_00028140|organism=Clytia hemisphaerica|type=transcript|length=1641bpRun BLAST on NCBI transcript from alignment at sc0000665:56289..68975- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00028140 ID=TCONS_00028140|Name=TCONS_00028140|organism=Clytia hemisphaerica|type=transcript|length=12687bp|location=Sequence derived from alignment at sc0000665:56289..68975- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00028140 vs. Swiss-Prot (Human)
Match: LRP2 (Low-density lipoprotein receptor-related protein 2 OS=Homo sapiens GN=LRP2 PE=1 SV=3) HSP 1 Score: 153.68 bits (387), Expect = 1.054e-38 Identity = 97/269 (36.06%), Postives = 147/269 (54.65%), Query Frame = 2
Query: 92 ESLAWDWVNKRLYWIDAADDTVNRLSRDGYSKEVLFH-GRPRAIVLMPCDGYMYWTDWGTKPCIKHATMDGLNPKXXXXXXXXXXXXXAVDKDENRLYWTDVSLNRIESSDLDGNNRKIILQADNLYILAISLYNNYIYFTDLVTKSLMRVEKKGNGHQELLDGGLNRYPKGIRIFSKSKQNCTRTLCHKDITRCTDICMPSNNLVHCSCPI--NKTLTDGYR-CIQTAKAGLNCSDTMTSFICSDESKCISKASICDGYYDCFDGSDE 886
+ +A+DW+ +R+Y+ D + +N ++ DG ++ V+ +PRAIVL PC GY+YW DW T I+ AT+ G ++ + L + +GL +D +E+ LYW D SL RIE S L G +R++I+ A ++ ++LY YIY+TDL T+ + R K Q + L P+GI K+++ C + C+ IC P N C CP N L + + CI G C +SF CS+ +CIS+ CD DC DGSDE
Sbjct: 2469 DGIAFDWITRRIYYSDYLNQMINSMAEDGSNRTVIARVPKPRAIVLDPCQGYLYWADWDTHAKIERATLGGNFRVPIVNSSLVMPSGLTLDYEEDLLYWVDASLQRIERSTLTGVDREVIVNA-AVHAFGLTLYGQYIYWTDLYTQRIYRANKYDGSGQIAMTTNLLSQPRGINTVVKNQKQQCNNPCEQFNGGCSHICAPGPNGAECQCPHEGNWYLANNRKHCI--VDNGERCG--ASSFTCSN-GRCISEEWKCDNDNDCGDGSDE 2731 HSP 2 Score: 129.798 bits (325), Expect = 2.551e-31 Identity = 89/281 (31.67%), Postives = 137/281 (48.75%), Query Frame = 2
Query: 92 ESLAWDWVNKRLYWIDAADDTVNRLSRDGYSKEVLFH-----------GRPRAIVLMPCDGYMYWTDWGTKPCIKHATMDGLNPKXXXXXXXXXXXXXAVDKDENRLYWTDVSLNRIESSDLDGNNRKIILQADNLYILAISLYNNYIYFTDLVTKSLMRVEKKGNGHQELLDGGLNRYPKGIRIFSKSKQNCTRTLCHKDITRCTDICM--PSNNLVHCSCPINKTLTDGYRCIQTAKAGL---NCSDTMTSFICSDESKCISKASICDGYYDCFDGSDE 886
ESLA DWV+++LYW+DA D + +G + +L PR + L P GY+YW DWG + I MDG N ++I T L G+ +D + LYW D L IE SDL+G++R + + AI+++ + IY+TD T+++ + K +++ L +R P I ++ +Q C + C+ +C+ P C CP D +R +Q + + CS T F+C++ KCI CDG DC DGSDE
Sbjct: 3273 ESLAVDWVSRKLYWLDARLDGLFVSDLNGGHRRMLAQHCVDANNTFCFDNPRGLALHPQYGYLYWADWGHRAYIGRVGMDGTNKSVIISTKLEWPNGITIDYTNDLLYWADAHLGYIEYSDLEGHHRHTVYDGALPHPFAITIFEDTIYWTDWNTRTVEKGNKYDGSNRQTLVNTTHR-PFDIHVYHPYRQPIVSNPCGTNNGGCSHLCLIKPGGKGFTCECP------DDFRTLQLSGSTYCMPMCSSTQ--FLCANNEKCIPIWWKCDGQKDCSDGSDE 3544 HSP 3 Score: 117.087 bits (292), Expect = 3.642e-27 Identity = 88/305 (28.85%), Postives = 147/305 (48.20%), Query Frame = 2
Query: 5 NQNKHLKNVQIQDGGGEMTVMKVRDQTFCESLAWDWVNKRLYWIDAADDTVN--RLSRDGYSKEVLFHGRPRAIVLMPCDGYMYWTDWGTKPCIKHATMDGLNPKXXXXXXXXXXXXXAVDKDENRLYWTDVSLNRIESSDLDGNNRKIILQADNL-YILAISLYNNYIYFTDLVTKSLMRVEKKGNGHQELLDGGLNR--YPKGIRIFSKSKQNCTRTLCHKDITRCTDICMPSNNLVH-CSCPINKTLTDGYRCIQTAKAGLNCSDT--MTSFICSDESKCISKASICDGYYDCFDGSDEQNC 895
+ +KH+ Q DG G + R + ESLA+DW++K LYW D+ +++ RL+ V + PR++V+ P GY+++TDW I A DG + VI T LG GLA+D +RLYW D ++IE S DG +R+ + + + + ++++ +++FTD +++RV K G ++ G+ + K + ++ N H + C+ C P N C CP L + + ++ + SF C + +C+ +CDG DC D SDEQ C
Sbjct: 759 DMSKHMIFKQKIDGTGREILAANRVENV-ESLAFDWISKNLYWTDSHYKSISVMRLADKTRRTVVQYLNNPRSVVVHPFAGYLFFTDWFRPAKIMRAWSDGSHLLPVINTTLGWPNGLAIDWAASRLYWVDAYFDKIEHSTFDGLDRRRLGHIEQMTHPFGLAIFGEHLFFTDWRLGAIIRVRKADGGEMTVIRSGIAYILHLKSYDVNIQTGSNACNQPTHPN-GDCSHFCFPVPNFQRVCGCPYGMRLASNHLTCEGDPTNEPPTEQCGLFSFPCKN-GRCVPNYYLCDGVDDCHDNSDEQLC 1060 HSP 4 Score: 99.3673 bits (246), Expect = 1.552e-21 Identity = 67/226 (29.65%), Postives = 120/226 (53.10%), Query Frame = 2
Query: 92 ESLAWDWVNKRLYWIDAADDTVNRLSRDGYSKEVLFHG---RPRAIVLMP--CDGYMYWTDWGTKPCIKHATMDGLNPKXXXXXXXXXXXXXAVDKDENRLYWTDVSLNRIESSDLDGNNRKIILQADNL--YILAISLYNNYIYFTDLVTKSLMRVEKKGNGHQELLDGGLNRYPKGIRIFSKSKQNCTRTLCHKDITRCTDICMPSNNLVH---CSCPINKTLT 739
E++A DWV + LYW D A +T+ DG + VL PR + L P + ++W+DWG P I+ A+MDG +++ + GL +D LY+ D L+ ++ D +G++R+ ++ +D + + A++L+ + +Y+TD T+ +MR K G+Q ++ + ++P GI SKQ + C +RC+ +C+ S+ H C CP +L+
Sbjct: 1512 ETIAIDWVGRNLYWTDYALETIEVSKIDGSHRTVLISKNLTNPRGLALDPRMNEHLLFWSDWGHHPRIERASMDGSMRTVIVQDKIFWPCGLTIDYPNRLLYFMDSYLDYMDFCDYNGHHRRQVIASDLIIRHPYALTLFEDSVYWTDRATRRVMRANKWHGGNQSVVMYNI-QWPLGIVAVHPSKQPNSVNPCA--FSRCSHLCLLSSQGPHFYSCVCPSGWSLS 1734 HSP 5 Score: 90.5077 bits (223), Expect = 9.651e-19 Identity = 67/256 (26.17%), Postives = 121/256 (47.27%), Query Frame = 2
Query: 92 ESLAWDWVNKRLYWIDAADDTVNRLSRDGYSKEVLFH---GRPRAIVLMPCDGYMYWTDWGT---KPCIKHATMDGLNPKXXXXXXXXXXXXXAVDKDENRLYWTDVSLNRIESSDLDGNNRKIILQADNL--YILAISLYNNYIYFTDLVTKSLMRVEKKGNGHQELLDGGLNRYPKGIRIFSKSKQNCTRTLCHKDITRCTDICMPSNNLVHCSCPINKTLTDGYRCIQTAKAGLNCSDTMTSFICSDESKCIS 835
E+LA DWVN ++Y ++ + ++ ++ DG + L G PR I + P GY++++DW + +P ++ A MDG N K ++ T LG G+ +D R+YW D + IE+ DG RK ++ +L + +SL+ ++FTD ++++ K + ++ R P G+ ++ +Q C + C +C+ S ++T DG G C T + +DE CI+
Sbjct: 470 ENLAVDWVNNKIYLVETKVNRIDMVNLDGSYRVTLITENLGHPRGIAVDPTVGYLFFSDWESLSGEPKLERAFMDGSNRKDLVKTKLGWPAGVTLDMISKRVYWVDSRFDYIETVTYDGIQRKTVVHGGSLIPHPFGVSLFEGQVFFTDWTKMAVLKANKFTETNPQVYYQASLR-PYGVTVYHSLRQPYATNPCKDNNGGCEQVCVLS----------HRTDNDGL--------GFRCKCTFGFQLDTDERHCIA 706 HSP 6 Score: 85.1149 bits (209), Expect = 4.953e-17 Identity = 67/225 (29.78%), Postives = 116/225 (51.56%), Query Frame = 2
Query: 92 ESLAWDWVNKRLYWIDAADDTVNRLSRDGYSKEVLFH---GRPRAIVLMPCDGYMYWTDWGTKPCIKHATMDGLNPKXXXXXXXXXXXXXAVDK-DENRLYWTDVSLNRIESSDLDGNNRKIIL-QADNLYILAISLYNNYIYFTDLVTKSLMRVEKKGNGHQE--LLDGGLNRYPKGIRIFSKSKQNCTRTLCHKDITRCTDICMPSNNLVHCSCPINKTLTDG 745
+ +A DWV + +YW D + + DG ++ L +P AI + P G M+WTDWG +P I+ A M+G + I++ LG TGL++D + +R+YW+D + IE+ DG +R++I +A N Y L I + + +Y+ + + K G G +E L+ +N + +RIF + + N + K I C+ +C+ C+CP + +G
Sbjct: 4145 DGIAVDWVGRHIYWSDVKNKRIEVAKLDGRYRKWLISTDLDQPAAIAVNPKLGLMFWTDWGKEPKIESAWMNGEDRNILVFEDLGWPTGLSIDYLNNDRIYWSDFKEDVIETIKYDGTDRRVIAKEAMNPYSLDI--FEDQLYWISKEKGEVWKQNKFGQGKKEKTLV---VNPWLTQVRIFHQLRYNKSVPNLCKQI--CSHLCLLRPGGYSCACPQGSSFIEG 4362 The following BLAST results are available for this feature:
BLAST of TCONS_00028140 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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