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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028110 ID=TCONS_00028110|Name=TCONS_00028110|organism=Clytia hemisphaerica|type=transcript|length=1619bpRun BLAST on NCBI protein sequence of TCONS_00028110-protein >TCONS_00028110-protein ID=TCONS_00028110-protein|Name=TCONS_00028110-protein|organism=Clytia hemisphaerica|type=polypeptide|length=412bp IYSKEKQKQIIIMTGTYKYDMAFWDLPEFHCEMIKPLCNEAQRLSLESRTRun BLAST on NCBI transcript from alignment at sc0000664:26894..33362- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00028110 ID=TCONS_00028110|Name=TCONS_00028110|organism=Clytia hemisphaerica|type=transcript|length=6469bp|location=Sequence derived from alignment at sc0000664:26894..33362- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000664:26894..33362- >TCONS_00028110 ID=TCONS_00028110|Name=TCONS_00028110|organism=Clytia hemisphaerica|type=CDS|length=13629bp|location=Sequence derived from alignment at sc0000664:26894..33362- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00028110 vs. Swiss-Prot (Human)
Match: AADAT (Kynurenine/alpha-aminoadipate aminotransferase, mitochondrial OS=Homo sapiens GN=AADAT PE=1 SV=2) HSP 1 Score: 93.2041 bits (230), Expect = 2.959e-20 Identity = 82/327 (25.08%), Postives = 151/327 (46.18%), Query Frame = 1
Query: 271 TFGATNALQFVMNRFFDNGDHIMMEEITYGRATQFAKMYKMKVHAVSSTGKDDCDVSLTHLEELLQKYGRDESELTEEKPFRGMMFLLPILNNPKGTSFSEECCRGVVKLARKYKYLVVTDDVYQWFQFNDEPKKKRLIYYDKLDRDESGYGNVISNATISKIAFPSIRIGWLEATTTLVKQLCLYPHYESSGGMNTFNQNL---LMHILRLPSFPAYCEKLKATYKK----VLAECCEYLRNNLPENVTFRYPDGSAFLWVQLPEKYDARDL-RKLCNENDTDMLPGTQFTLCPEKYRHFFRISVTNGNPETRMESLKRICEAVKK 1227
T G+ L V + GD+++++E Y Q + V+S D+ + L ++L ++ + E +K ++ +P NNP G S + E + + +LARKY +L++ DD Y + QFN K R+ + +D D G VI + SKI +RIG+L L++++ L+ S+ +TFNQ + L+H F A+ +++ Y +LA ++L L E + P FLW+++ D ++L + + MLPG F + + R S ++ +PE + + + + +K+
Sbjct: 114 TSGSQQGLCKVFEMIINPGDNVLLDEPAYSGTLQSLHPLGCNIINVAS---DESGIVPDSLRDILSRW-KPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLIIEDDPYYFLQFN----KFRVPTFLSMDVD----GRVIRADSFSKIISSGLRIGFLTGPKPLIERVILHIQV-STLHPSTFNQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWL-TGLAE---WHVPAAGMFLWIKVKGINDVKELIEEKAVKMGVLMLPGNAFYVDSSAPSPYLRASFSSASPEQMDVAFQVLAQLIKE 423 The following BLAST results are available for this feature:
BLAST of TCONS_00028110 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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