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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028074 ID=TCONS_00028074|Name=TCONS_00028074|organism=Clytia hemisphaerica|type=transcript|length=1172bp
GGAGAGACAGCTTACGAGAAAATCTGGGTCCCAGACCTCTTCGTTCGTAA
CATGAAGCAAGTTGAAAACAGCAAATTTCTGACTGACCTTTCCGGCGTAA
CAATCAACCCAGATGGTTTGGTCGAGCTGTCGAGTAGNACATGAAGGAGG
TTGAAAACAGCAAATTTCTGACTGACCTTTCCGGCGTAACAATCAACCCA
GATGGTTTGGTCGAGCTGTCGAGTAGAATCAGAGTGGTGGCACATTGTGA
AATGGATCTATTTATGTTCCCGTTTGACTCTCAATCGTGTAATATCATGA
TCACTTCCTATCTTTACAATACGGCTGTCTTGTCAATGTATTGGAGTGAA
AACCCAGTGGTGATTGATGAGAAGCGAGATGGCCGAGAAACAAAGATTGA
AGGTTTCATGGGATTCCAACTGACACGGTCATTGACAAGAGAAGATAGCT
ATCTGTATCCATTGAGTGGATTGAGATATCAATACATGATTGCAACTTTT
GTGTTAAAGAGAGAACCACAGTACTACATTCTCAGAGGTTTCATCCCAAG
CTCATTGTTGGTCTGCCTAACGTGGGCAAGCTTTTGGCTACCAACAACAA
GCTATCCAGCTAGAGTGGCACTTATCTTGACCTCATTCTTGGCGTCTATT
GTGCTCTACCAAGGCTCATCCTTACATATCAATCAGATGACAGTCATGCA
AGTGTTTTTATTGGGAAATATTGCTTTGATTGGATTAACCCTACTTGAAT
ACTTGCTAGCAGTAAAAAAAGAACACCAGATTGTTAAGATGAAATCAATC
GTGAATCAAACGAAAGGTGCGAAAGTAAAAGGAGTTTTAGCAcacaacaa
aaagaaaatggtCAACCCAGTAGATCAGAAAGCGCGGTACATCATCCCTC
TTATCTACATGGTGTTTATCGTGACTTTTGTAATTTCGGTGACAATGTTA
AGTGGAAAGTAATCATAATATTTCACGTGATAAAGGTAACTTTGGTGGTG
CCCGCTTTGTCACCATGCTGATTTTGATCAGAACAGCACATTGATTATAA
TGGGATAATCTTAATAGCAAAATAAAAgcactaaaatttaaaaataaaaa
ttaattattgcAAAGAAAATTGTTATAAGCTTGAGTTTGAGCAACTTTGG
TTATTTTCGAGTTAACTACTGG Run BLAST on NCBI transcript from alignment at sc0000662:96709..102734+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028074 ID=TCONS_00028074|Name=TCONS_00028074|organism=Clytia hemisphaerica|type=transcript|length=6026bp|location=Sequence derived from alignment at sc0000662:96709..102734+ (Clytia hemisphaerica)
GGAGAGACAGCTTACGAGAAAATCTGGGTCCCAGACCTCTTCGTTCGTAA
CATGAAGCAAGTTGAAAACAGCAAATTTCTGACTGACCTTTCCGGCGTAA
CAATCAACCCAGATGGTTTGGTCGAGCTGTCGAGTAGNACATGAAGGAGG
TTGAAAACAGCAAATTTCTGACTGACCTTTCCGGCGTAACAATCAACCCA
GATGGTTTGGTCGAGCTGTCGAGTAGAATCAGAGTGGTGGCACATTGTGA
AATGGATCTATTTATGTTCCCGTTTGACTCTCAATCGTGTAATATCATGA
TCACTTCCTATCTTTACAATACGGCTGTCTTGTCAATGTATTGGAGTGAA
AACCCAGTGGTGATTGATGAGAAGCGAGATGGCCGAGAAACAAAGATTGA
AGGTTTCATGGGATTCCAACTGACACGGTCATTGACAAGAGAAGATAGCT
ATCTGTATCCATTGAGTGGATTGAGATATCAATACATGATTGCAACTTTT
GTGTTAAAGAGAGAACCACAGTACTACATTCTCAGAGGTTTCATCCCAAG
CTCATTGTTGGTCTGCCTAACATGGGCAAGTTTTTGGTTACCCACATCCA
GCTATCCAGCCAGGGTAGCACTTATAGTGACGTCATTCTTGGCGTCAATT
GTATTATATCAAGGTTCTACATTACACTCTATTCAGATGACAGTGATGCA
AGTGTTTTTGTTTGGCAATATTTCCTTCATTATGGTCACTTTGATGGAGT
TCCTGATGGCCGTCAAAGCAGATCACGAGAAGAAAGAGAAAACAGAGGTA
ACGTTTAGTAGAAAGTTACCTTGGAGACATTCTTATTCTTGATATGTGTA
AgttaagattacgtcattttcccTATCAGAAACACCCGAAAACACATTAG
CAACACAGGGGTCAAAgtttttttcgggtgtttccgatccgaaaaatgac
gtaatcttgacttgcgcatatcaagaatttcaAAGGTTGTTTTTTACCCC
AATTCTTCGACCTCGAAACTGGCTTCCTTTTTCACATAATCTGCCCCCTT
CCCAATATGAAGATACCGAGGGTAAGATTTATagagaagatgaaaatgaa
ccTCAAAATGAAATGCCCTTACGAATTATATACAAGTAGATGAAGTCATA
ATACTGACAGAAGAtagaaataaatagaaagttgaATAATAATATTTTCT
GATTGTTTTCTTTTCCTTAAACTTTCATCATAgtcattttataaaaacac
tggtctagaaggcttttgtctcgttttattgttaaaagatggatagtaag
gtcgtttagcataatttacaggaaaaaaataatatatagctgaaactttc
tccagaccttctctataggatacttatgcctcaggaaaaaaatcCCCTag
aatcccactggtggaacattccctttttgggcaatttctttttcccccag
gcaaaaccctaagggcgaaatgttttgaaaatttcaaactcattttcaga
caatatCAGGTATACCATTCGAANNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNctgaggcataagcatc
ctatagagaaggtctggagaaagtttcagctatatattatttttttccta
caaacagcctgtacttttgtaacacgaccacactaggAGCTttcgtacca
aaatcgatttattttgcaaacttttttgatcatgtgatcagaaaatagac
caatcccaagaggataTTTTGGTAACgcgatcaaaaagtatgcaaatcgc
aacttgccttttgtttgtaacaaaagaaaatttaactaaaaagctAAAta
aatacattgccagaccggggttttttataatgactattttttcattttca
gcttGTACCTACGATCcggaatgaaattttcaacagcGCAAACGAAACGC
AAGAAAATGAATTCTGGCCAAAGGAGAAGAAAAACATGACAAGTGCAGTC
GACGTaggtaaaaatcaaaccaatgaaaatgaaaggaaATCAACGACACG
CAATAAAGAAAAGACGGAAAATTCGGTTGATCGGAAAGCCCGGTTTATCA
TCCCaattctttatttcatttatgtTGGAGTATTTGTTGCagctttattt
ttcttaaatcaagaataaaaatgtcctattTTGATATCACGCAGAGAAGT
CGTGGAAAGAGATTGGAAATTGCTCTTAACTTAAAATTTCATGTCTTTCA
AAACGAAGGCAAGGATCGGCGAACAGCAGTAGCTTGACAAGAGGAAGATT
AAATCCGAGCAAAGAATACTTTACAGCTAAACAAACGATTCACATTAAAA
TCTGGTGATTGCTAgacaaacatgaaattttgagtATAAAGATGCTAGTA
ATGTGTAATTGGGCAATTGAGCACTTTATTTATCCTAATTCGTTATTTAA
TGTCGtagttaacaattttgtaatatgATAATATAATCATTTTCATGCat
tttcaaatatcaaataaatCTTACAATATATAAATAAGTTTCTGCTTGCT
AAGAAGGCTAGGTAAGGCTGATGGTCACAATATAAAAGCAATAAGCCTAT
TCCCCCTATTCTGGCCTTCAAGGTAGGTGGTGCTAGATAATGTCTTTGTA
TTATAATTGGAAGCTATGatgaaaaacattgaaacagcaaaacagaaaca
attttgcttttaaaaagACCCTGTTCTGTGagctttttcaaatatttcaa
actttcaaaactatttaAACAGAAAAATTACTAAAAACCAGCTGGTTGTG
TAAAAAAAAACTCACTCGGTTATTTTcttaactgaaaaaatcatgCTGAT
ataaactttcaccaaagtgcaaagaaaaagaaaatggacTTCAACAACag
cttcattaatttttaacataattatCCTATTTGATAAaggtaataaaaaa
ttaaaattctgtaaaataataaaacttgaagcttgaaataaaaagtatat
tCACCAAGCCAAATAGGTTTTCAACTTCaataaaattggtcaaaatgaTG
TACTTTAACAATATTAAAGCCTTCACAGTAATTTGGGGGCTCCAAATGTA
TTGTTGCTACGGACAACTGGctagtttgaaaaatataaacatgACAGGTT
ACAGTAAGGTCTCAATACCTTATTTAAAAAACCACAATAAAACTTTGGAC
GTTCTAACCTCGATTACAGTTTTGAACATTGGTAATTTGAATACGGAAGA
AATGACATTTGAagttgaaatatattttgatatgaAGTGGATGGACCCAA
GATTGGCTTTCAAAGAATACCTAAATGCTTCGTATGTCCTTGTCCCAGGT
TTGTTGATACTGTTCAACCTTTTTTTGCCCTAATATACAAAATTCTTTTG
GTTGGTGCAGCACTTTAAACTAGCTGTTGAACGTTTTCGTTTCTTTTAAG
CAGTATATCATTTCGCTACACCtaaaactttctttaaaaaggCTGAgggc
tgaaattttcagaaatccTTTCATATAAGATTTTTATGATTGAATCCTGG
ATGATGAGAGCGTTTTCagttaagaaaaaacaaatttgaagtATTGAGAG
TGAGAATAAAGCTGGTCTTCCAGCAGCTTCAAAGTTAGCCTATACACAGT
CATTTGGAAGGACAGTATCaacatgaaaggcaagaatgaATGATTGTCTT
GTTGATAAAGGGATCCTAGAATACCAGTGGGTTCTGAAACTCGACAAACT
AGCTTTTTTTAAAGAGCAACAAAAAATTATTACTACTAGGCACGTGCGTT
TGCCAATGTGAGGCTATCATAGTTGAAGATTTGAAGTTACAGAGAAAGGG
TCACGTCAGTGGTAATAACGATAATAGATAATGAAACATTCAAATCATAA
AGCACTATTTTTGTTTGGTTACAGGGGAGACTGCATATCAGCACATATGG
GTTCCCGACCTATTCATTCGCAATATGAAATTTTCTGAAAGCAGCACATT
TCTGACTGACCTATCTGGAGTCATTATCTATCCAGATGGCTTTGTTACTT
TATCAAGTCGAATGAGAGTGGTGGCGCATTGTGAAATGGATCTACTGATG
TTTCCACTAGATTCCCAGAGCTGTAATTTGATGATTGTTTCCTTCAATTA
TGATACAACGGTATTGAGGTCACTATGGGGTGAAAACCCGGTAGCAGTTG
ATACAATGAGAGATGGTAGAAAGTCACAAATTGATACTTGGATGGGATTG
AAGCTTGTGGAGACATTGACAACAGAAGGAAGTTATGTCTACCAAAACAG
TGGTCTCAAATTCCAATACTTGATTGCAACTTTTGTTTTGGAAAGACAAA
CCCAGTACTACATCCTCAAAGGCTTTATTCCAAGCTCATTACTGGTCTGT
CTGACGTGGGCAAGCTTTTGGCTACCAACAACAAGCTATCCAGCTAGAGT
GGCACTTATCTTGACCTCATTCTTGGCGTCTATTGTGCTCTACCAAGGCT
CATCCTTACATATCAATCAGATGACAGTCATGCAAGTGTTTTTATTGGGA
AATATTGCTTTGATTGGATTAACCCTACTTGAATACTTGCTAGCAGTAAA
AAAAGAACACCAGATTGTTAAGGTAAGAAATAAAGCTAAAATCAACATAA
TTCAAAAGAATCtatctgacagggtctattATTTCCAGTTgtacccaatg
aagtataagcccgaagggttagaagcaaatctttaacctttctcaggcga
GAAAAAGTCAAGCCTTCAAAAGATGCgtcgtatttttgatgacggattga
atttagcgatttctttgttttcgagtggtttttttttaatctagcgGACA
ATTTTACTCTTAATCAGAAATTTATATAAAAACCACAcgggccgctcaag
gccgcgcaactttggtaaaatttagtggcttcaaatcctaccaaggagat
tcgattctaacCCTTGGGGTTTATACTTCGTTGGTTGTACCATCCTCATC
AGATCACTGTATTATCTCATAACTCGTATTTTATTCTCTTAGATGAAATC
AATCGTGAATCAAACGAAAGGTGCGAAAGTAAAAGGAGTTTTAGCAcaca
acaaaaagaaaatggtCAACCCAGTAGATCAGAAAGCGCGGTACATCATC
CCTCTTATCTACATGGTGTTTATCGTGACTTTTGTAATTTCGGTGACAAT
GTTAAGTGGAAAGTAATCATAATATTTCACGTGATAAAGGTAACTTTGGT
GGTGCCCGCTTTGTCACCATGCTGATTTTGATCAGAACAGCACATTGATT
ATAATGGGATAATCTTAATAGCAAAATAAAAgcactaaaatttaaaaata
aaaattaattattgcAAAGAAAATTGTTATAAGCTTGAGTTTGAGCAACT
TTGGTTATTTTCGAGTTAACTACTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028074-exon-sc0000662-1491911889:96709..97279 | TCONS_00028074-exon-sc0000662-1491911889:96709..97279 | Clytia hemisphaerica | exon |
| TCONS_00028074-exon-sc0000662-1510915933:96709..97279 | TCONS_00028074-exon-sc0000662-1510915933:96709..97279 | Clytia hemisphaerica | exon |
| TCONS_00028074-exon-sc0000662-1575043694:96709..97279 | TCONS_00028074-exon-sc0000662-1575043694:96709..97279 | Clytia hemisphaerica | exon |
| TCONS_00028074-exon-sc0000662-1491911889:101714..101930 | TCONS_00028074-exon-sc0000662-1491911889:101714..101930 | Clytia hemisphaerica | exon |
| TCONS_00028074-exon-sc0000662-1510915933:101714..101930 | TCONS_00028074-exon-sc0000662-1510915933:101714..101930 | Clytia hemisphaerica | exon |
| TCONS_00028074-exon-sc0000662-1575043694:101714..101930 | TCONS_00028074-exon-sc0000662-1575043694:101714..101930 | Clytia hemisphaerica | exon |
| TCONS_00028074-exon-sc0000662-1491911889:102351..102734 | TCONS_00028074-exon-sc0000662-1491911889:102351..102734 | Clytia hemisphaerica | exon |
| TCONS_00028074-exon-sc0000662-1510915933:102351..102734 | TCONS_00028074-exon-sc0000662-1510915933:102351..102734 | Clytia hemisphaerica | exon |
| TCONS_00028074-exon-sc0000662-1575043694:102351..102734 | TCONS_00028074-exon-sc0000662-1575043694:102351..102734 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000662 | supercontig | sc0000662:96709..102734 + |
Blast
BLAST of TCONS_00028074 vs. Swiss-Prot (Human)
Match: GBRR2 (Gamma-aminobutyric acid receptor subunit rho-2 OS=Homo sapiens GN=GABRR2 PE=2 SV=5) HSP 1 Score: 95.5153 bits (236), Expect = 1.973e-21 Identity = 62/199 (31.16%), Postives = 101/199 (50.75%), Query Frame = 3
Query: 171 TDLSGVTINPDGLVELSSRIRVVAHCEMDLFMFPFDSQSCNIMITSYLYNTAVLSMYW--SENPVVIDEKRDGRETKIEGFMGFQLTRSLTREDSYLYPLSGLRYQYMIATFVLKREPQYYILRGFIPSSLLVCLTWASFWLPTTSYPARVALILTSFLASIVLYQG---SSLHINQMTVMQVFLLGNIALIGLTLLEY 752
TD + + PDG V S RI V A C MD FP DSQ+C++ + SY Y L +YW + + DEK + I+ F T L Y +G Y + F L+R +++L+ + P++L+V L+W SFW+ + PARV+L +T+ L + G S ++ + + ++L + + L++LEY
Sbjct: 153 TDNIMLRVFPDGHVLYSMRITVTAMCNMDFSHFPLDSQTCSLELESYAYTDEDLMLYWKNGDESLKTDEKISLSQFLIQ---KFHTTSRLA-----FYSSTGW-YNRLYINFTLRRHIFFFLLQTYFPATLMVMLSWVSFWIDRRAVPARVSLGITTVLTMTTIITGVNASMPRVSYVKAVDIYLWVSFVFVFLSVLEY 342
The following BLAST results are available for this feature:
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