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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028064 ID=TCONS_00028064|Name=TCONS_00028064|organism=Clytia hemisphaerica|type=transcript|length=2905bp
CCTCAACAGACTATGAATAAACAGCAACATATAAAAACCAGGTCTATGTT
TAGTTACAGTTGACTGATCACGTCGTTAATTGAATTAAGCTCAAGCTGTG
CATTAGATTTTGTGCAGAGGTTAATATCAAAATAATCACAGATTTATATC
AAAGTAATGGTAATTCTAACCTGGAGATGTAGTGGACTAGGCCCAAGAAA
TCACCAAAATGCAGTATTCGAAGATTTTAGCTAtatcttttttggtaaca
atCCTATTATGTGGAACAGatgCTTTTGAGACCAAAGAGAGCAGGGAGAG
GAACAATAAACTTTATCAAACGCTTGCCAATGCTCAGCCAAAACATGCAA
CTACAAAAGATTCCATTCACTCATCAACACAAAAgaagaacattcaaaaa
actaaaattctgGAAAGTGGACTTTACAACGTATTAGCAAATATCAAAGA
AGGAAAAATGAAAAGGCGGAATATGACATCTCTGTCAGCCCGCCATGCAA
TGATCCGCCCGACTGAACCACCTACTCGAGGTACTCGTCCAGCTCGCCCA
ACTCGTCCTACACCTCCAACTCGACCTACACGTGCCACAAACTGCCCTTG
TAACCAAAACTGTCAATCATGCGGCTGCACCTGTCATAagaaacaaatca
aacaaaacattCATGCAAGAAAAACATTGCCAGGATCGCGTAAAACAATA
ACGACTCCTCGTAATTTGACTGAGATATTTCGTAAAAAGTTACTAAAATC
TCGTAATGAGACAGATTCTCGAAAACGGGATTTCATGAACGAAGTTTTAG
ATAGTTCAGTATTTTCAACAGGGCATGCGCCAAGCCAGTGGCAAGACTTC
TATGATAATGGTGCGAAATGGGACCAGTATGAAGCACCACAGGTTCACCA
TgacagaaaaatcaattttgaagaCCCGAATTATAAGGTATCGCTAGGTT
TTACAGACGGAGGTCACGAGCTAATGGAACATGCTAATGAAATGACTAAT
AATCATGTTGAAGCTTATCCAGGAGAAATTGTTTCTGGTGAAAATTACCT
GTCAAAATTCGTCTCCCCTGTAGAGCAAGACACGCGCAGGCCTTGTTCTC
GCGGTCGTCGCAATTACGGATATGATAAAAAACGCTATCGAATCAAAGGA
GAAGGTTACGACCCATGTTCACGCGAGATGACTGAGGTGACAAAAACCGA
CAAGGAAAACACAAGGGCTGTTTTCAATACACTAAGTGGGTTTATGACTC
CCTTTAATTCGTTCGACAGTGATCAAGATGGACCACAAAAAGGAAACCGC
CGTCACGAATTCAATAGCCGAGATCGCAATCTTGATCGGCCAGATGAAGA
GAGTGAAAGCGACGAACGAAGACATCACGATGACCGAGATCGGGACGAAC
ACGGAAGTCAAGCACCGTTTCGAGGAAACGAGCGGTTCCGTGTTCGAGGC
GATAGGCATCCCGACGGCCGACATTTTCACGATGAAGAGAACCGGGATAA
CGAATACGAAGATGAACGGCAAGACGCTCGGAATCGTAATGTGAGAGTTG
AGAATCGGGAACAAGATGTTGAaacgaaaaatgaaaatcattttgTTGAT
AAACAACACTTTAATGAAGACGGTCCACGTGAAGAGGAAGAAAGATATGA
TGAAGGGGAGAATGAACGTGAAGGTGAAGAGGGGAGAAACTTTAGCAACG
AAGGAGAGAAAATGACTAGAGAAGAAGACACGACCTCTAGATTCTTACCT
GACGAGCAAGGTACATCGAGAGACAATTTATTAGATTCAAACGGCCGCCC
AATGCGCTATGAAAAGAGTGATGAAGTGGTAGGTAAGTTTCTTCAACAAA
CGAAGGAGGGTGACCAGGAAAAGAGCCTCGAGGAGAAAGCGAATTCGCAG
CAGGAGGAGGGTGATGAAAAGGAGAGCGCTCTCGTAGAAGAACAACATGG
AGAAGTGCCAGAAACTGAAGTAGACGAAGGAGCTGCTCGAAGATCGGAGA
GTGAGATTTCAAATCGAGTGAAAGaGTTGATGAGTGCAACCTTTGAACCA
ATATCTACattcatgaaaaaatcaaacatcCGAACAAAATCCACCAACCA
CTGACTATGCACGTATCACCCATTCATCAATGATCTGAATGTAACCAAAC
ACTATACAGAATACATCCAACTCGTTTCCGAGCGCTAACGATTGTACCAG
GTCCATTAGTAAGGTGGTGCAAGTGGCAATGGGTACGACATTTTTTGAAT
CCATGCATGATTTACCCGCTTTTCTGTTTTGGATAAGTGCAGCTAATCCA
CCACACAGAGTtcattcaaatcaaaatcaaaatacatGCATTCATCTGCA
TTCATTCGTCTATTTGtgataaaataaaatcattgcACATTATTTGTTCA
GGCGAATTAATATTCAGAATTCACGGACAATTCACTCCGTCTGTCCATCT
GGAATGAGATCAACCAATAACGAAACATAGTCCATCCTCTCAAAATAttc
atcaatcaatcaatcgtcTGACCATGAATTCAAATATACTCCACACCCAC
ACATTGTCATCGTACATTTCATAGCACAAAAATAAGGAATCAATAGTTTT
TATATACTGCTCAATCCGTGCAGAGTTTATATGTTATATGGACAGTTTTT
ATGCATCCATGCATGTTAGAAACCTAATTATATCACCGACTGATAAACAA
CGCTGTTTTAGGGTTTTAAGTTTTAAGTCCACAACATCCATATTATAAAT
ATAAGGTTAGCTGAacgttggaaaaaaaatttggtgcgAATTAAAGTCTT
AAGTTAAAGGTTATtataaactttgaaaattaGAATTTCTAGAATTTAGA
AATATATGTAACTAACTCTATGTAAATAGGatattaaaactattttagtt
caTTT Run BLAST on NCBI transcript from alignment at sc0000662:48549..53829+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028064 ID=TCONS_00028064|Name=TCONS_00028064|organism=Clytia hemisphaerica|type=transcript|length=5281bp|location=Sequence derived from alignment at sc0000662:48549..53829+ (Clytia hemisphaerica)
CCTCAACAGACTATGAATAAACAGCAACATATAAAAACCAGGTCTATGTT
TAGTTACAGTTGACTGATCACGTCGTTAATTGAATTAAGCTCAAGCTGTG
CATTAGATTTTGTGCAGAGGTTAATATCAAAATAATCACAGATTTATATC
AAAGTAATGGTAATTCTAACCTGGAGATGTAGTGGACTAGGCCCAAGAAA
TCACCAAAATGCAGTATTCGAAGATTTTAGCTAtatcttttttggtaaca
atCCTATTATGTGGAACAGGTAATAATCTTTTGGACAACAATTAATTGta
actttattgaaaagaactCAACCTGTTTGAATATCTTATTTCAAGAAAGA
GGTAACCCTGTCTCAGTTTTGGATAACGTGAAAGAGCTAAATCTTGATGG
TAATggagaatgttttctttttgattaaTTGGGATTTCAAGTCTTATTAC
TCTTGTGTGCTTAGTAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNtggaaaattttcgaaaaattaacaagaggggggggcccgttt
atttggaacctaagagtacattcGTAAAATTTTAGAGAAGATGATAGCTT
TCCAATGGAAAAAATGCTTTTGCCATTGTaacatttactttttttttcag
atgCTTTTGAGACCAAAGAGAGCAGGGAGAGGAACAATAAACTTTATCAA
ACGCTTGCCAATGCTCAGCCAAAACATGCAACTACAAAAGATTCCATTCA
CTCATCAACACAAAAgaagaacattcaaaaaactaaaattctgGAAAGTG
GACTTTACAACGTATTAGCAAATATCAAAGAAGGAAAAATGAAAAGGCGG
AATATGACATCTCTGTCAGCCCGCCATGCAATGATCCGCCCGACTGAACC
ACCTACTCGAGGTACTCGTCCAGCTCGCCCAACTCGTCCTACACCTCCAA
CTCGACCTACACGTGCCACAAACTGCCCTTGTAACCAAAACTGTCAATCA
TGCGGCTGCACCTGTCATAagaaacaaatcaaacaaaacattCATGCAAG
AAAAACATTGCCAGGATCGCGTAAAACAATAACGACTCCTCGTAATTTGA
CTGAGATATTTCGTAAAAAGTTACTAAAATCTCGTAATGAGACAGATTCT
CGAAAACGGGATTTCATGAACGAAGTTTTAGATAGTTCAGTATTTTCAAC
AGGGCATGCGCCAAGCCAGTGGCAAGACTTCTATGATAATGGTGCGAAAT
GGGACCAGTATGAAGCACCACAGGTTCACCATgacagaaaaatcaatttt
gaagaCCCGAATTATAAGGTATCGCTAGGTTTTACAGACGGAGGTCACGA
GCTAATGGAACATGCTAATGAAATGACTAATAATCATGTTGAAGCTTATC
CAGGAGAAATTGTTTCTGGTGAAAATTACCTGTCAAAATTCGTCTCCCCT
GTAGAGCAAGACACGCGCAGGCCTTGTTCTCGCGGTCGTCGCAATTACGG
ATATGATAAAAAACGCTATCGAATCAAAGGAGAAGGTTACGACCCATGTT
CACGCGAGATGACTGAGGTGACAAAAACCGACAAGGAAAACACAAGGGCT
GTTTTCAATACACTAAGTGGGTTTATGACTCCCTTTAATTCGTTCGACAG
TGATCAAGATGGACCACAAAAAGGAAACCGCCGTCACGAATTCAATAGCC
GAGATCGCAATCTTGATCGGCCAGATGAAGAGAGTGAAAGCGACGAACGA
AGACATCACGATGACCGAGATCGGGACGAACACGGAAGTCAAGCACCGTT
TCGAGGAAACGAGCGGTTCCGTGTTCGAGGCGATAGGCATCCCGACGGCC
GACATTTTCACGATGAAGAGAACCGGGATAACGAATACGAAGATGAACGG
CAAGACGCTCGGAATCGTAATGTGAGAGTTGAGAATCGGGAACAAGATGT
TGAaacgaaaaatgaaaatcattttgTTGATAAACAACACTTTAATGAAG
ACGGTCCACGTGAAGAGGAAGAAAGATATGATGAAGGGGAGAATGAACGT
GAAGGTGAAGAGGGGAGAAACTTTAGCAACGAAGGAGAGAAAATGACTAG
AGAAGAAGACACGACCTCTAGATTCTTACCTGACGAGCAAGGTACATCGA
GAGACAATTTATTAGATTCAAACGGCCGCCCAATGCGCTATGAAAAGAGT
GATGAAGTGGTAGGTAAGTTTCTTCAACAAACGAAGGAGGGTGACCAGGA
AAAGAGCCTCGAGGAGAAAGCGAATTCGCAGCAGGAGGAGGGTGATGAAA
AGGAGAGCGCTCTCGTAGAAGAACAACATGGAGAAGTGCCAGAAACTGAA
GTAGACGAAGGAGCTGCTCGAAGATCGGAGAGTGAGATTTCAAATCGAGT
GAAAGGTAAGATTTTAAAATGTCTTCGTTTTCTCacgcatcatttttatt
ttacgaaacTGGCATTCAAAAAAGCTGATAAacccaaaaagtaaaaaaaa
atccatgcattgtttttttggttttcaaaacgtGGTCGTGAGAAGCTCGT
TCTGAATTCTTCGTTTAGAAACTAAACTTAAAAGTTACCAATGCTCTTAA
AAGTTAGTTCCATAAAACATTATATCAATACTAAATTCAATCCACCAAAG
GTATGTTGAGTATGATCGAAGGCACTGATAAGATGGGTTCTCCTGAAGAG
AGGAAAGCGATACAAAAAATCATGGATGCATCGAATCGTGAGAATGAATT
ACTAGCTAAAAGCTTTGCAAGTAATgttgaaaagaaagttttaagtggaG
AACGGAGAAGTTCTGAAATCACTGAAACTGGGAATCCACATGTTAGCACT
ATTTCAAACTACGAGAATAAACTCTTAAGTCTTAAGCATGAAAATGACTT
TGCAACACCTGGAAATCACCACGAAAAAGAATTTGCAGAATTATCACCAA
CCGGTGGAGACAGCTCCATAAGTCAGCTCTTGGGAACTCCCATGAATGAT
GAGAAAATTGCACAACTTCCTGAAGGATTGACCGAGGCTATGGGTAGTGC
TAAGTCATTGATTACCACTAAAGTTGCTGGTTTAAGTTTTCAACGTTCTC
TTCTGAAGTCTTTGGCAGATGTGGCATCACCTACCAAACAAAGCACACCT
GGATTACTATCATCGTTTAAAAGTCAAACAAAAAACGATATGAGTAATTT
GAAAGAACATTTGAAATTATTCCTGCTTCATTTGAATGAGAAAGGCACCA
AGAATCCTGATgtggaaaaacaatttttatctCATACAGCAATTAGTTCG
ATTATTAACGAAGTACAAAAAGCGGACCACAACCTGCTAAATGGGAAATC
TAAAATCAGGACCAAGATTTTGAACTCAAAAAACAAGCTTTGAAGAATCG
AAGGGTTCTCTTAGATACTGGTAACAAATCAAGGTTACTATGTCATCAAA
TACTGATAATGCAAAATGGAACACCACAGAATTCAAACACTTAACAATCA
TGGATTTGTATTTTGCTCGCAAAGCTGTCTTCATTTCCTGAATACCAAAA
ACTCCAAAACGAACATTAGATTTCTCTAGTGGGAACAAAATTCACATAGT
GAATTTGGTTTATCCAGCTTTGATATCAAGCGGATAGGATATTTaaagtg
ttttttttgtaataatCAGTTGTCATTtctttgttcatttttcattgcag
aGTTGATGAGTGCAACCTTTGAACCAATATCTACattcatgaaaaaatca
aacatcCGAACAAAATCCACCAACCACTGACTATGCACGTATCACCCATT
CATCAATGATCTGAATGTAACCAAACACTATACAGAATACATCCAACTCG
TTTCCGAGCGCTAACGATTGTACCAGGTCCATTAGTAAGGTGGTGCAAGT
GGCAATGGGTACGACATTTTTTGAATCCATGCATGATTTACCCGCTTTTC
TGTTTTGGATAAGTGCAGCTAATCCACCACACAGAGTtcattcaaatcaa
aatcaaaatacatGCATTCATCTGCATTCATTCGTCTATTTGtgataaaa
taaaatcattgcACATTATTTGTTCAGGCGAATTAATATTCAGAATTCAC
GGACAATTCACTCCGTCTGTCCATCTGGAATGAGATCAACCAATAACGAA
ACATAGTCCATCCTCTCAAAATAttcatcaatcaatcaatcgtcTGACCA
TGAATTCAAATATACTCCACACCCACACATTGTCATCGTACATTTCATAG
CACAAAAATAAGGAATCAATAGTTTTTATATACTGCTCAATCCGTGCAGA
GTTTATATGTTATATGGACAGTTTTTATGCATCCATGCATGTTAGAAACC
TAATTATATCACCGACTGATAAACAACGCTGTTTTAGGGTTTTAAGTTTT
AAGTCCACAACATCCATATTATAAATATAAGGTTAGCTGAacgttggaaa
aaaaatttggtgcgAATTAAAGTCTTAAGTTAAAGGTTATtataaacttt
gaaaattaGAATTTCTAGAATTTAGAAATATATGTAACTAACTCTATGTA
AATAGGatattaaaactattttagttcaTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028064-exon-sc0000662-1491911889:48549..48817 | TCONS_00028064-exon-sc0000662-1491911889:48549..48817 | Clytia hemisphaerica | exon |
| TCONS_00028064-exon-sc0000662-1510915933:48549..48817 | TCONS_00028064-exon-sc0000662-1510915933:48549..48817 | Clytia hemisphaerica | exon |
| TCONS_00028064-exon-sc0000662-1575043694:48549..48817 | TCONS_00028064-exon-sc0000662-1575043694:48549..48817 | Clytia hemisphaerica | exon |
| TCONS_00028064-exon-sc0000662-1491911889:49899..51653 | TCONS_00028064-exon-sc0000662-1491911889:49899..51653 | Clytia hemisphaerica | exon |
| TCONS_00028064-exon-sc0000662-1510915933:49899..51653 | TCONS_00028064-exon-sc0000662-1510915933:49899..51653 | Clytia hemisphaerica | exon |
| TCONS_00028064-exon-sc0000662-1575043694:49899..51653 | TCONS_00028064-exon-sc0000662-1575043694:49899..51653 | Clytia hemisphaerica | exon |
| TCONS_00028064-exon-sc0000662-1491911889:52949..53829 | TCONS_00028064-exon-sc0000662-1491911889:52949..53829 | Clytia hemisphaerica | exon |
| TCONS_00028064-exon-sc0000662-1510915933:52949..53829 | TCONS_00028064-exon-sc0000662-1510915933:52949..53829 | Clytia hemisphaerica | exon |
| TCONS_00028064-exon-sc0000662-1575043694:52949..53829 | TCONS_00028064-exon-sc0000662-1575043694:52949..53829 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000662 | supercontig | sc0000662:48549..53829 + |
Blast
The following BLAST results are available for this feature:
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