TCONS_00028028 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028028
Unique NameTCONS_00028028
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length239

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028028 ID=TCONS_00028028|Name=TCONS_00028028|organism=Clytia hemisphaerica|type=transcript|length=239bp
GTGTGTTACTCTTTGTGACTATTTATGTACGTCTGTGcatgaaaaatCAT
ATAAATATATAGCACTTAATCAGAATCCGTAGATTTTACATATGGAATTT
TAATTGACATATTCATCCATTCATCCCATTTGTGTATGCGATTTAACTCT
AGTTAAGACGGCCGACTTTTTAACCCTCATCATTTCCTCATTTTAGAGAG
ATTTGAGAGAAAGTCGTTTACTAAAGCAGAAATGTGATG
Run BLAST on NCBI

transcript from alignment at sc0000661:57174..57705-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028028 ID=TCONS_00028028|Name=TCONS_00028028|organism=Clytia hemisphaerica|type=transcript|length=532bp|location=Sequence derived from alignment at sc0000661:57174..57705- (Clytia hemisphaerica)
GTGTGTTACTCTTTGTGACTATTTATGTACGTCTGTGCATGAAAAATATC
TGCAAAATAAAAGTGGATCGAATTTCAATTCAATTTCAATGTCACTAAAA
GTCAAACTAATTACTTTTCCAACCTTGCGTTATCAATTTCAAAAGATACT
TTATGCGAGAATAAATACTTCACACGATATATTCCGTAGCAAAGAAAAGT
CTGTTTGAGGCCTTAGATCGGAAAGAACTTTTATGCTTGAAGCGAACGAG
AAACCCAAAAATATGGTCAGGTCCCTTATTGGAATTTTTCTCCCGAATTT
TAGTCTTTCGCATCATAATTTATCGTACTTATTTACTTACCATATAAATA
TATAGCACTTAATCAGAATCCGTAGATTTTACATATGGAATTTTAATTGA
CATATTCATCCATTCATCCCATTTGTGTATGCGATTTAACTCTAGTTAAG
ACGGCCGACTTTTTAACCCTCATCATTTCCTCATTTTAGAGAGATTTGAG
AGAAAGTCGTTTACTAAAGCAGAAATGTGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015859XLOC_015859Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028028-exon-sc0000661-1575043694:57659..57705TCONS_00028028-exon-sc0000661-1575043694:57659..57705Clytia hemisphaericaexon
TCONS_00028028-exon-sc0000661-1575043694:57174..57365TCONS_00028028-exon-sc0000661-1575043694:57174..57365Clytia hemisphaericaexon
TCONS_00028028-exon-sc0000661-1510915933:57659..57705TCONS_00028028-exon-sc0000661-1510915933:57659..57705Clytia hemisphaericaexon
TCONS_00028028-exon-sc0000661-1510915933:57174..57365TCONS_00028028-exon-sc0000661-1510915933:57174..57365Clytia hemisphaericaexon
TCONS_00028028-exon-sc0000661-1491911889:57659..57705TCONS_00028028-exon-sc0000661-1491911889:57659..57705Clytia hemisphaericaexon
TCONS_00028028-exon-sc0000661-1491911889:57174..57365TCONS_00028028-exon-sc0000661-1491911889:57174..57365Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000661supercontigsc0000661:57174..57705 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.891331	0	3.03753	0	0	1.17514	2.2003	0.770243	0.95407	0	1.82623	1.82369	0	0	2.22796	3.43083	2.81319	0	0	4.41872	2.58636	0	0.952801	1.96272	6.1309	0	0	0	1.03363
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028028 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top