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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027986 ID=TCONS_00027986|Name=TCONS_00027986|organism=Clytia hemisphaerica|type=transcript|length=399bp
TTACAATGCAAGTGATGGAACCATCAAATGCCGAAATAAGATGCCACAAC
CTCACGTTTCTACGTCTCAATTCAAAGGAGACATTGGGATCAAAGCATCA
GGACTTAACGGAACAAAGGTTCTCGGAGGTGAAAGTACCAATGAAATGAA
TGAAACAATGAACTTCAAAGCTGGGAGAAGCAACTATGATTACCAAAATT
TGACGTCTCTCCATAACTGTAGCGGATGCTTGGAAAATAAGGAATTGATC
CACATCAACACATCAAGCCCACTCAAACCCAACAAGACAAAATCACAATT
TAACACTGAAACGCAAGCACCACAGACACAAAGTCCGAAACAAGGCCAGA
AGTACTCTCAGAACAATCTCTCTTCACACAATATAACAAAAGCTAGCAC Run BLAST on NCBI protein sequence of TCONS_00027986-protein >TCONS_00027986-protein ID=TCONS_00027986-protein|Name=TCONS_00027986-protein|organism=Clytia hemisphaerica|type=polypeptide|length=132bp
YNASDGTIKCRNKMPQPHVSTSQFKGDIGIKASGLNGTKVLGGESTNEMN
ETMNFKAGRSNYDYQNLTSLHNCSGCLENKELIHINTSSPLKPNKTKSQF
NTETQAPQTQSPKQGQKYSQNNLSSHNITKAS Run BLAST on NCBI transcript from alignment at sc0000660:179731..181114- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027986 ID=TCONS_00027986|Name=TCONS_00027986|organism=Clytia hemisphaerica|type=transcript|length=1384bp|location=Sequence derived from alignment at sc0000660:179731..181114- (Clytia hemisphaerica)
TTACAATGCAAGTGATGGAACCATCAAATGCCGAAATAAGATGCCACAAC
CTCACGTTTCTACGTCTCAATTCAAAGGTGAGAAATCTGGCGTTACCTAT
CTTTCAAACTATTCAAGTGATTCGGAACCAACGAAAGTAGTTTGTCAGGT
CCATTTTGCTTTATATAAAACCCTCCAAACTTTTTTCAAAACTATTTTTT
TGATCGAAATTTTTTTTAAAGTGGTACCCATCAAGAGCGCTAGATCCACT
TTTTTCTCGAACGCTGTGATATAGCACCGTTAGACGCTAGATAAAGTTCT
AACATTGCAATCTCTTCCTTGCAGCACTTTAAGAAAAGTTCCGAATAAAT
ATGGAGTGTTTATTAGTCTGATTCCTCAGAAAGCACGAACCTCAGTAAGT
CTCAAATCGATAATCTAGGTGTACATTCATTCACCATTTGGAATAAAGCT
ATCACTCTGCATCACTAACATTCTGGTGATTGGCAAGAGCAAGAAAGCTT
CAATCGCAGATACGCAATGAACTGTGTTCGAATCCAAAGTATTTCCAGAC
AGGGTAATGGGGAAGCACGGTATAAGAACACAATAATCGTAGTAAAGTTG
AAATTGCAGAATCTAGCTTCAGTGAGGCTGAAATATTGTATATTGTATGT
TTTTTTTTTCAACCAGGGACAACATTTTAGCATTAGCATTTGTTTCCAGT
GAAACGGGGTTCCCATCAGCTCTATGGGACACACATGGGTGTTGTAATAT
ACTTGTACATATGAAAAGGAGATCAAGAGACAAAATTATACTTTTTAGGA
GACATTGGGATCAAAGCATCAGGACTTAACGGAACAAAGGTTCTCGGAGG
TGAAAGTACCAATGAAATGAATGAAACAATGAACTTCAAAGCTGGGAGAA
GCAACTATGATTACCAAAATTTGACGTCTCTCCATAACTGTAGCGGATGC
TTGGAAAATAAGGCTCGTTGTTGTTTTTACACCTGGGGCGCAGGCGGGGG
CGGGGGCGATACCGTAATCACCACAGTTAATCTTTCTCTCAAATTCAACC
TGTGGAGACGTACTATGAGAGCTTTATCACGTACGTCTTTTAGTCACATT
TCATTAAACCATATTTTAAGAGGAACGTCTGTAGCGTCCTTTTAATCGAG
TAGAAAATACCATTTAAAAGATACATAAATCCTATAAAATAGGCTAATAT
TAGTTCATTTATTGTCAATATTCTAGGAATTGATCCACATCAACACATCA
AGCCCACTCAAACCCAACAAGACAAAATCACAATTTAACACTGAAACGCA
AGCACCACAGACACAAAGTCCGAAACAAGGCCAGAAGTACTCTCAGAACA
ATCTCTCTTCACACAATATAACAAAAGCTAGCAC Coding sequence (CDS) from alignment at sc0000660:179731..181114- >TCONS_00027986 ID=TCONS_00027986|Name=TCONS_00027986|organism=Clytia hemisphaerica|type=CDS|length=1188bp|location=Sequence derived from alignment at sc0000660:179731..181114- (Clytia hemisphaerica)
GAATTGATCCACATCAACACATCAAGCCCACTCAAACCCAACAAGACAAA
ATCACAATTTAACACTGAAACGCAAGCACCACAGACACAAAGTCCGAAAC
AAGGCCAGAAGTACTCTCAGAACAATCTCTCTTCACACAATATAACAAAA
GCTAGCGAGACATTGGGATCAAAGCATCAGGACTTAACGGAACAAAGGTT
CTCGGAGGTGAAAGTACCAATGAAATGAATGAAACAATGAACTTCAAAGC
TGGGAGAAGCAACTATGATTACCAAAATTTGACGTCTCTCCATAACTGTA
GCGGATGCTTGGAAAATAAGTACAATGCAAGTGATGGAACCATCAAATGC
CGAAATAAGATGCCACAACCTCACGTTTCTACGTCTCAATTCAAAGGAAT
TGATCCACATCAACACATCAAGCCCACTCAAACCCAACAAGACAAAATCA
CAATTTAACACTGAAACGCAAGCACCACAGACACAAAGTCCGAAACAAGG
CCAGAAGTACTCTCAGAACAATCTCTCTTCACACAATATAACAAAAGCTA
GCGAGACATTGGGATCAAAGCATCAGGACTTAACGGAACAAAGGTTCTCG
GAGGTGAAAGTACCAATGAAATGAATGAAACAATGAACTTCAAAGCTGGG
AGAAGCAACTATGATTACCAAAATTTGACGTCTCTCCATAACTGTAGCGG
ATGCTTGGAAAATAAGTACAATGCAAGTGATGGAACCATCAAATGCCGAA
ATAAGATGCCACAACCTCACGTTTCTACGTCTCAATTCAAAGGAATTGAT
CCACATCAACACATCAAGCCCACTCAAACCCAACAAGACAAAATCACAAT
TTAACACTGAAACGCAAGCACCACAGACACAAAGTCCGAAACAAGGCCAG
AAGTACTCTCAGAACAATCTCTCTTCACACAATATAACAAAAGCTAGCGA
GACATTGGGATCAAAGCATCAGGACTTAACGGAACAAAGGTTCTCGGAGG
TGAAAGTACCAATGAAATGAATGAAACAATGAACTTCAAAGCTGGGAGAA
GCAACTATGATTACCAAAATTTGACGTCTCTCCATAACTGTAGCGGATGC
TTGGAAAATAAGTACAATGCAAGTGATGGAACCATCAAATGCCGAAATAA
GATGCCACAACCTCACGTTTCTACGTCTCAATTCAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027986-exon-sc0000660-1575043694:181038..181114 | TCONS_00027986-exon-sc0000660-1575043694:181038..181114 | Clytia hemisphaerica | exon |
| TCONS_00027986-exon-sc0000660-1575043694:180153..180316 | TCONS_00027986-exon-sc0000660-1575043694:180153..180316 | Clytia hemisphaerica | exon |
| TCONS_00027986-exon-sc0000660-1575043694:179731..179888 | TCONS_00027986-exon-sc0000660-1575043694:179731..179888 | Clytia hemisphaerica | exon |
| TCONS_00027986-exon-sc0000660-1510915933:181038..181114 | TCONS_00027986-exon-sc0000660-1510915933:181038..181114 | Clytia hemisphaerica | exon |
| TCONS_00027986-exon-sc0000660-1510915933:180153..180316 | TCONS_00027986-exon-sc0000660-1510915933:180153..180316 | Clytia hemisphaerica | exon |
| TCONS_00027986-exon-sc0000660-1510915933:179731..179888 | TCONS_00027986-exon-sc0000660-1510915933:179731..179888 | Clytia hemisphaerica | exon |
| TCONS_00027986-exon-sc0000660-1491911889:181038..181114 | TCONS_00027986-exon-sc0000660-1491911889:181038..181114 | Clytia hemisphaerica | exon |
| TCONS_00027986-exon-sc0000660-1491911889:180153..180316 | TCONS_00027986-exon-sc0000660-1491911889:180153..180316 | Clytia hemisphaerica | exon |
| TCONS_00027986-exon-sc0000660-1491911889:179731..179888 | TCONS_00027986-exon-sc0000660-1491911889:179731..179888 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000660 | supercontig | sc0000660:179731..181114 - |
Blast
The following BLAST results are available for this feature:
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