TCONS_00027981 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027981
Unique NameTCONS_00027981
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1847

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027981 ID=TCONS_00027981|Name=TCONS_00027981|organism=Clytia hemisphaerica|type=transcript|length=1847bp
TTAATGAGACAATTTATGAAGGTTGGATCATAGATGACGGATACTCAAAA
AATTATGACTTGTACAAGTACGGTACAATCATTTTATTCGTCTCGTGCGT
TATGGCATTGGTTGCAATCCATTTTATTTGCCCGTTGAGATGGAATCGca
acaaaattatcaaaacactCTCCAACATGAAGCAACGAACTCAAAGATCT
GCCAAGAAAAAACGACGAAACTTCTTTGACACAAGAAGCATCAGTGCAAA
CACTGAATTTGATTTCCAACCCGTTGCCACTAGCGACGGACCGTATCCAA
CTTCCATTTTACGAGCAGAGTCGAGCAGCAATAAGAAAGCAAGTCCATTA
AACACACCTGATGATTATAAAGGCTTTCCATCGAGACAAATAAAAAAGCA
ACCATCCCAAAGAAGCATATTAATCAATCAACCAACTGCACTACCTTCAC
TACCCCCTGAAACTCAATCAAGTTTCAATGCGTTTCATGGCAATATAATG
AGTTCATCCAGGGGGCAACTGTTTAAAGATCAACATCGACGACCATCCAT
GGTGACTTTTCAAATggatggaaaatcaaaacaaaaccgtTTCAATACGA
TTGCTCATAAACCTCGCCAAAGAGTCGGTCTAGATTTGAACTTTCACAGC
CAAGGTACCAACAAGGCAAACAACAATCATCAAAGATTCAACTATTTCAC
CGATCTAGAACAATTTCCACCACACTCTGCTTTAACCAAGAAATATTCGA
GTAGTCAAGACCTTACCAATTCATCCATTACTGGACTAGATCTCACATCT
GATATGAATCGGATTAAAAAGTTACGATTTTCAAATTGTGCCAGCAGTGT
ACCTGATTTTCATAAGCAAGGTTTGGTGGTTGATGGCGCCCGACATCAAA
CTGCACTTCAAGATGCATATCATAATAACAGGGAATCAGATGCGGATTCG
AGAAGTCATCGAACAAAAGAAGAAGTAACAGACGAAGGCCAGATGCAATG
TGTTTTCGAATTCGACATTGAAAGGCTCAAACTCAAAATCAAGGATTTGC
AAGTCCAAACAATGTTTCCACCTGGAGTGCCTGGATTCGTTGTCGAAGTC
ATGTTGGAGCCCCGCGCGCGCACCGAAGAGATCGCGCGGTCTAAAGTGTA
CGTCACAGTGGACCAACAAGTGGAAATACAACTTGAAgagatatttcaaa
tttcatgCAGCAAAGAACAGTTGATGCAATGTTCTATTATCATCTCTGTA
ATTCCTATCTTGGGGAATATGGTTTTCGTGGTTGAAACTGGTCTTAATGA
ACTTAATTTGATTGGCAATGGTGAAATATTTTTGGGTGGATTCTTCAAAG
GAATTTATTCGCAAACCTTTTAAGGTATTGAAATGCTCAAAGCAGTGTTG
CAACCAGTTTTTGTGAATCTGGATGTAAATACGATTAACCTTTTGTTTGG
TGGATCATTTGACTGAAATCCCTTGTACTGACAATCATAACGTATCTCAA
TTGCACACTTTGGACCATGTTTACTTCAAGTAAATTTTGACAACAGATAA
TACAATTAATTTAATAGCATACCTTTGAAGTTAAGAGATCCGCGGAGTTC
TGCATTATCAATCATATTGAACGGTTATTGCTGAAGCTTCCAAGAACAAG
GCTCTAAGCCACTGAACCATTCCATTTCACTTTCTCATGGTGGTTGACCA
CTCTTAAAAACTGCGTGCCGGCTGTTACCACATCTgctttattatttttc
atttctctatAAGAATACATTAATATGATAGACTTtctctactttaatgg
gataaacttattcaaaaatttcgcagATGAGGGTTCACTGATCAAAG
Run BLAST on NCBI

transcript from alignment at sc0000660:45846..49658-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027981 ID=TCONS_00027981|Name=TCONS_00027981|organism=Clytia hemisphaerica|type=transcript|length=3813bp|location=Sequence derived from alignment at sc0000660:45846..49658- (Clytia hemisphaerica)
TTAATGAGACAATTTATGAAGGTTGGATCATAGATGACGGATACTCAAAA
AGTAATACGGTGAACTTTTAATTAAATCATAATTTAGAATTTGGTAAATT
TGACGAATTTGGCGAATTTGGCGAATTTTGTCAAAAATTGCGAATTAAAT
CCCTGCGAAAATTTCAAAAATCGGTCATTCGCCAAACTTCTTTGTTAGTT
TGCATTTCTAAGTAAAATACCACGTATTTTTTAGTTTACCGGAGACTAAC
ACCTTCCCATTCGCCAAATTAAATCCCCGCTAAATTTTACAAAATTGATC
ATTCGCCAAATTTAATTTTTGCCAATCGCCAAATTAAATCCACGCCAAAA
TTAACCCACTTAATACAGTACCCTTAAGGGGACTAATTTATTTGGCGAGC
AACAAAGACTCTAAAAAAAAATAATTTGGAAAGAAACTAAAAATTAAATA
CTTTTGGAAGGTAAAATTTTAACTCTATTTCTACTTTACTATTTCTTCGT
AGATTATGACTTGTACAAGTACGGTACAATCATTTTATTCGTCTCGTGCG
TTATGGCATTGGTTGCAATCCATTTTATTTGCCCGTTGAGATGGAATCGC
AACAAAATTATCAAAACACTCTCCAACATGAAGCAACGAACTCAAAGATC
TGCCAAGAAAAAACGACGAAACTTCTTTGACACAAGAAGCATCAGTGCAA
ACACTGAATTTGATTTCCAACCCGTTGCCACTAGCGACGGACCGTATCCA
ACTTCCATTTTACGAGCAGAGTCGAGCAGCAATAAGAAAGCAAGTCCATT
AAACACACCTGATGATTATAAAGGCTTTCCATCGAGACAAATAAAAAAGC
AACCATCCCAAAGAAGCATATTAATCAATCAACCAACTGCACTACCTTCA
CTACCCCCTGAAACTCAATCAAGTTTCAATGCGTTTCATGGCAATATAAT
GAGTTCATCCAGGGGGCAACTGTTTAAAGATCAACATCGACGACCATCCA
TGGTGACTTTTCAAATGGATGGAAAATCAAAACAAAACCGTTTCAATACG
ATTGCTCATGTAAGAATGCCTTTTGAAGTTTTTTCCTCATATCTTCAGGC
TGGCTTTAAAAATGTTGTTATTGCTAACATCTTGAACGATTCTTTTACCA
AAAAGTATATGAAAGTCAGAAAGTCCAACTGTTACCTCATAAAATAAATC
AAGGCAAGCCTTAACTGAATTAAATTTACTCTACTTCATTTTTTTTACTT
TGAAGGCAAGCCTCCCAATTCTGGATAGTATAATTATTTTTCACATAGAA
TTATTGCATAGAAAATTATAGGCCTTTATACCTTTTCAACGATATATGAT
ATATGTTAGGATTGAAGCATTCGTTTGAAAAATGATAACAAAACAAAGAC
TAGTGCAGACTTAAAGCCAACGGACTTTAATTTGTTTTAGAAACCTCGCC
AAAGAGTCGGTCTAGATTTGAACTTTCACAGCCAAGGTACCAACAAGGCA
AACAACAATCATCAAAGATTCAACTATTTCACCGATCTAGAACAATTTCC
ACCACACTCTGCTTTAACCAAGAAATATTCGAGTAGTCAAGACCTTACCA
ATTCATCCATTACTGGACTAGATCTCACATCTGATATGAATCGGATTAAA
AAGTTACGATTTTCAAATTGTGCCAGCAGTGTACCTGATTTTCATAAGCA
AGGTTTGGTGGTTGATGGCGCCCGACATCAAACTGCACTTCAAGATGCAT
ATCATAATAACAGGGAATCAGATGCGGATTCGAGAAGTCATCGAACAGTA
AGGCTATAGAAACATTTTTTTGTTATCTTGGTTGGGCGCTTCTAAATCTA
ACCTAAATCTTTGTTAAAATTTTTCCTATTTAAACAGATGATTTGTGGAG
TTTCTTTCCATCTGCAAAAATCTTATGTCAAACATTTTTCCTTTTGCAAA
AATCTTATGCCAAATTTTTCTCCTTTTCGCTAGAATCTTTCTTCAAAAGT
TTCTCCCTTTCTGCATCATCTTCAAATATCTTGTCAAGAAGTCTTTTTTG
TAAAATCTTATGTCAAATATTTTTTCCTTTTTGCAAAATCTCTCATCAAA
TATTTTTTTCCTTTTTTGAAAAATCTTTCGTCAACAAATATCTTTTCCTT
TTTCGCAAAATCCACATCAGATATTTTTCCTTTTTGTTAAATCTTCTTCT
TTTCAGAACACTCGAAAAATGCCCAGAATCACTGATTTTAGTATCAATGT
ACTAAAAAAAATTTCAAATTTTAGTCTGGATAGTGGTTTTATTTTTTTAG
GTATACCACCACGTCACTAAACATCATGATGTCTGAGATTTTAGTCCCTG
CATAGGAGTCCTCTGCAAAGTATATTCATTGAATTTAAAGCCCGAAGGGC
TAGAGTAGAATCTCTAACCTTTCCCAGGCAAAAAAAAGTGAAGCCACTTA
TTTCCCATCCAGAACGCGGCGCAATATTGACGACGGATTGTATCTTGCGG
TTCCTATATTTTTGAGGATTTAATTGCACTTTTTGAAATCTAGTGATATG
TTTTACTTTCAATCCGGTAAAACAATGCGCAGACGTTCTGGATGGGAAAT
AAGTGGCTTCGTTTCCCATCCAGGAGTCTCGAGTCTAGCCCTTCGGGCCT
GGAAGTCAATGAGTATATTAAACACTTTTGTTTTTCTCATAACTAGAAAG
AAGAAGTAACAGACGAAGGCCAGATGCAATGTGTTTTCGAATTCGACATT
GAAAGGTGGGTTTCCACATAGTCTGATTTGCAGGCCTCTAGAAGAATGTA
TTAATTACTAGGTATTAGAAAATTTTTCGTTAGGGGATGAGCAAAAGGCT
AGTTTTATGTCGCTTGTTCTATAAAAGATCAAAGTGAAACTAAGTTGACA
TCGATCAAATAACCAAGTAAGGCCATTTTAGAGGTATGATCGCAGAGCTC
AATTTTATTTTTAAGAAATCTGACTTCATTACTCTAACAGGCTCAAACTC
AAAATCAAGGATTTGCAAGTCCAAACAATGTTTCCACCTGGAGTGCCTGG
ATTCGTTGTCGAAGTCATGTTGGAGCCCCGCGCGCGCACCGAAGAGATCG
CGCGGTCTAAAGTGTACGTCACAGTGGACCAACAAGTGGAAATACAACTT
GAAGAGATATTTCAAATTTCATGCAGCAAAGAACAGTTGATGCAATGTTC
TATTATCATCTCTGTAATTCCTATCTTGGGGAATATGGTTTTCGTGGTTG
AAACTGGTCTTAATGAACTTAATTTGATTGGCAATGGTGAAATATTTTTG
GGTGGATTCTTCAAAGGAATTTATTCGCAAACCTTTTAAGGTATTGAAAT
GCTCAAAGCAGTGTTGCAACCAGTTTTTGTGAATCTGGATGTAAATACGA
TTAACCTTTTGTTTGGTGGATCATTTGACTGAAATCCCTTGTACTGACAA
TCATAACGTATCTCAATTGCACACTTTGGACCATGTTTACTTCAAGTAAA
TTTTGACAACAGATAATACAATTAATTTAATAGCATACCTTTGAAGTTAA
GAGATCCGCGGAGTTCTGCATTATCAATCATATTGAACGGTTATTGCTGA
AGCTTCCAAGAACAAGGCTCTAAGCCACTGAACCATTCCATTTCACTTTC
TCATGGTGGTTGACCACTCTTAAAAACTGCGTGCCGGCTGTTACCACATC
TGCTTTATTATTTTTCATTTCTCTATAAGAATACATTAATATGATAGACT
TTCTCTACTTTAATGGGATAAACTTATTCAAAAATTTCGCAGATGAGGGT
TCACTGATCAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015833XLOC_015833Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027981-exon-sc0000660-1575043694:49608..49658TCONS_00027981-exon-sc0000660-1575043694:49608..49658Clytia hemisphaericaexon
TCONS_00027981-exon-sc0000660-1575043694:48600..49156TCONS_00027981-exon-sc0000660-1575043694:48600..49156Clytia hemisphaericaexon
TCONS_00027981-exon-sc0000660-1575043694:47862..48218TCONS_00027981-exon-sc0000660-1575043694:47862..48218Clytia hemisphaericaexon
TCONS_00027981-exon-sc0000660-1575043694:46904..46962TCONS_00027981-exon-sc0000660-1575043694:46904..46962Clytia hemisphaericaexon
TCONS_00027981-exon-sc0000660-1575043694:45846..46668TCONS_00027981-exon-sc0000660-1575043694:45846..46668Clytia hemisphaericaexon
TCONS_00027981-exon-sc0000660-1510915933:49608..49658TCONS_00027981-exon-sc0000660-1510915933:49608..49658Clytia hemisphaericaexon
TCONS_00027981-exon-sc0000660-1510915933:48600..49156TCONS_00027981-exon-sc0000660-1510915933:48600..49156Clytia hemisphaericaexon
TCONS_00027981-exon-sc0000660-1510915933:47862..48218TCONS_00027981-exon-sc0000660-1510915933:47862..48218Clytia hemisphaericaexon
TCONS_00027981-exon-sc0000660-1510915933:46904..46962TCONS_00027981-exon-sc0000660-1510915933:46904..46962Clytia hemisphaericaexon
TCONS_00027981-exon-sc0000660-1510915933:45846..46668TCONS_00027981-exon-sc0000660-1510915933:45846..46668Clytia hemisphaericaexon
TCONS_00027981-exon-sc0000660-1491911889:49608..49658TCONS_00027981-exon-sc0000660-1491911889:49608..49658Clytia hemisphaericaexon
TCONS_00027981-exon-sc0000660-1491911889:48600..49156TCONS_00027981-exon-sc0000660-1491911889:48600..49156Clytia hemisphaericaexon
TCONS_00027981-exon-sc0000660-1491911889:47862..48218TCONS_00027981-exon-sc0000660-1491911889:47862..48218Clytia hemisphaericaexon
TCONS_00027981-exon-sc0000660-1491911889:46904..46962TCONS_00027981-exon-sc0000660-1491911889:46904..46962Clytia hemisphaericaexon
TCONS_00027981-exon-sc0000660-1491911889:45846..46668TCONS_00027981-exon-sc0000660-1491911889:45846..46668Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000660supercontigsc0000660:45846..49658 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.0662513	0.0263771	0.175682	0	0.406462	1.15137e-07	0	1.60784e-07	1.45133	0.226697	0	0.546897	1.7233e-10	0	0	7.79953e-06	0	0.812949	0.79022	1.18342	2.29147	0.0860522	0.0303856	0.0231181	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027981 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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