TCONS_00027967 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027967
Unique NameTCONS_00027967
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length922

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027967 ID=TCONS_00027967|Name=TCONS_00027967|organism=Clytia hemisphaerica|type=transcript|length=922bp
CCTGGAAGTCTATGAAAGGGCTGGAAAAGTCAGGAGATTAAATTTCGGTC
CAACTATGGGCTAGAAATATGGAGATTTCAACGTTTTGCTCCtggaaaga
tcgaaattagtACAAATTTAAccctatCAACGAACTTCACCAATTGGTGA
CCAGTTGGGAAAGCGTTGCAAGTGTCGTTCCTGATTTGatTGAACGATTA
ACCGCATTACGCTCTTTGAATGATCAAGctaCGAATTTTTCACAATCTTT
GGATCATCTCTCGAGCACACAACACGTTATCCGTGATCAATTACGAACTC
AAAAGGACACTCTTGATAAGTACGAGAAGAGTTTTGCTGTGAACGTTCAA
TCCATACAAGCGAACTGTGCATCGTTGGAAAGTCGAATCACCGAACTCAT
GAAGAAAGTCGGTAGTTAATAATGTTGAACGATGGAGTTCAGTGCTCATG
TTAACATAGGAAATTTCCGAGATGTACCTAGTACTTATTTTTATAAAGAC
TCTTTACAATTTATTCTGTTTGTAAATACTGGACTTAAATTTCTGCTTGt
tatctattcatgatatgcaccattgcaatgtcttctgacattacatcatg
gacccaatagctTTATGTAAGTGACGTGAAATcggtcaatacgtcacttt
caactttcaaataGTCCACAAATGCTTTTACTACATTGATTGATCCGGGT
GAGGCAATCGATCTGAAAATAACCGTATGTACGAACGAATAGTTTACCCT
GAGCCCCCAACCCCCTGGATTGATCGTATGAGTCACGCCCAAAACTCTAC
TAAACCTATTTTGTGTGCTGTGCAACAGCATTTCTACAACTTACTTATTT
CTATAGTCTTTGTCATATGAGATTGGTATTAGGTGGGGTGTGTAAGCCCg
attgaaatcaaaaaatatttga
Run BLAST on NCBI

transcript from alignment at sc0000660:230..6132+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027967 ID=TCONS_00027967|Name=TCONS_00027967|organism=Clytia hemisphaerica|type=transcript|length=5903bp|location=Sequence derived from alignment at sc0000660:230..6132+ (Clytia hemisphaerica)
CCTGGAAGTCTATGAAAGGGCTGGAAAAGTCAGGAGATTAAATTTCGGTC
CAACTATGGGCTAGAAATATGGAGATTTCAACGTTTTGCTCCtggaaaga
tcgaaattagtACAAATTTAAccctgtaagggtcggaaaattcacaacAT
TTTCCTACTTTTGCTCTTGTTCACTTTCGCTAAGGATGGAAAGTGTTatt
tttcaggcaatctagactctctaaattgcaaaattctccTTCGGCGTAAC
CATGGTTGTTCTTGGTTTACATTTCCAACTTTACCCCCTAAATATACTTC
CCGTGGGCCAACAAGAAAATGGACCTGggcagatttaaaaaaatggctgt
TTCAAGGCTTACTAAcaccaaaaaaattagaatacgtcaatatcattatt
ttgttttttagatCAACGAACTTCACCAATTGGTGACCAGTTGGGAAAGC
GTTGCAAGTGTCGTTCCTGATTTGGTAAGTTGTGTNattattttgttttt
tagatCAACGAACTTCACCAATTGGTGACCAGTTGGGAAAGCGTTGCAAG
TGTCGTTCCTGATTTGGTAAGTTGTGTTTTATGGTCACCCAGCCTCTTTC
CCCTTTGTATGCTTTACATCAGACAACATTCAGGATATCATTAAAGGATC
TTCAACCATGATCTTTCACTTCCAAGCGAGAAtcattcataattttctta
gatTTTCAGTAAGCTGGATACAGGGATGAAGTAGTTGACTCCTCAATGGG
CAAAGACAGTTGACAGGACTGTAACGCCCTAAAACGAACTGCATTCAGGA
TATCATTATGTTATTATACATTAGGTCCATCCCAGGccctttttttcatt
tatatcATTAAAGCtctttattttctgacattgtTTTAGTCCAGGTGGGT
GATGGTTCTTTTTCTGGATTTAACGTGAGGATAAGAATTTTTCTTAACAA
GGTGACTAGAAAGTTGCTGGTCACTACACTTTGGTCGTTATTGTTTGATC
TTTAGATTCTGCTAATGGAAATTGATTAAATTGATTAAAAAGCGAACTAA
AAACTTAACTTTTTGTCAGTTTGTCAGCCATTTAGTAGGGCTCGCTTCGA
AAAAACACGAACCTTTAGCCTGCCTATTTCCTTCAAAGGGAAANACTTAA
CTTTTTGTCAGTTTGTCAGCCATTTAGTAGGGCTCGCTTCGAAAAAACAC
GAACCTTTAGCCTGCCTATTTCCTTCAAAGGGAAACGATTGTCGAGTTAT
TGTATTACTTCTTATGAAAACACAACACCTTTTTTAAGATAACAAAAAGC
TTCATTACGTTTATTACgccatgttttcttttcttaataGCGGGTTTAGT
AAACGCTATTCTAATTTGTTTTTGTACCCCTGAGTGAGTTGAATTTGTCC
CCTTTTGTATAACGCTATGCATCGTCCTTTTAATTCTCATAAATGGTATT
GCCTATCAAATAGAGTTGGATTAGTCTTTATCAAGTATAATTATGCGTGC
TTTGATAATTAATTTTATGCTATTATAGAAAGGCATAATTATTCAGAACT
TAATTATGCTTTCGAACTTTTCTAATTTGAGGAACCTTAAATTGACAAAT
AACATTTTCTTTCATCTTTTGTCGTACTGCTTCTACACTGCATGTGGTTT
TTAGAGGTTAGCAATTCAGTCAGCTATTCATACTACGTCATAATGGCGGG
CACACATTTGAAAACAACCTTGTGTGCGGACAAAAAGTAGGGTCtcaata
gaccttatcagagtttttgatttttctaaaaaatcgatgcattgtgggat
tgtttcgagtgtattacaataaaattccctcgaggaattcctaagaNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Ngtttttgatttttctaaaaaatcgatgcattgtgggattgtttcgagtg
tattacaataaaattccctcgaggaattcctaagagaattctattgtaat
acactcgaaacaatcccaaaatgtgtcgattttttagaaaaatcaaaaac
tccgataaggtcaaTTTTTTACCCTTACAGTGCGGCGAAAATTTACCCCT
ACggcacatttaaaaaaattccataaaaaaggGAGTGCAACTTTCCAAAA
TTTCTCCCAAAAAAGCTGTTTTTACATGATCGTTCTTTGCCGACTTTGAA
TGCACTTAAGCTATAAGTATGATACTGTTTTTAAAGGGATTATgtatcag
atgattttttatatttggcttagagataccttttatGATCCAGAGAGACA
CCTCTAAATCCTTTGacccaattattttccaaagctgagatatttgactt
tgaatttacaaatatttacttaaaaacaatagaaatttaacgtaaagact
gtgtaaagactcacttttagagatttcaaagtcaaatatctcagctttgg
aaaaaaattgggtCAAAGGATTTAGAGGTGTGGTTATATTATTGGTACCT
TATAACTTTATGTTATTTAtggttgtgtttttttttgctctagatTGAAC
GATTAACCGCATTACGCTCTTTGAATGATCAAGGTAAGCTTTTGAAATCC
TAATCCTAACAGTTTTGCATTTTGCATCCGTACagtgatgtttttaaaaa
atttacccTGTAAAAGTTGGTTTTTATATCTGATTATATCTTCATCTTCT
TAAACTCAGCTTGGCAGATATTCAAAACACCCTTTTCGATTCAGTATTAG
TTCATATGTGGTCTGACCACTTCACAAATTTTTACTGGAGCTTCCGGTAG
TTTCCATAGGCtattcacagtcgcaaagcgtagcgggtaatcaggaccac
tgcgcgctaatgacgacttactattggtcaaaagttatgaaaaattttga
agatttttgagtCTAGCCAACAGGAAGCcgttatggaggcgcaatcagta
ctgattacccatgatccatttcgactgtgaaatggcctattgaaATCTGG
ATGGAAGCCAGCTCTCAACAAGCTGGTTAAACCTGGTTAAACCGTCTGGT
TAAACCTttctgttttatatttttcagctaCGAATTTTTCACAATCTTTG
GATCATCTCTCGAGCACACAACACGTTATCCGTGATCAATTACGAACTCA
AAAGGACACTCTTGATAAGGTAAACTACATCAATACACCTTTCcagtaat
tcaaacttctcagaaatggcccgggaaaatgtgcgctccaccgttatgta
aaaattttttgggaggtaaacgaacgcgtttttgcctgcgagggatTAGG
GAAAGTGgcttttcagcttctaacttttgatagcgatcttcttttggaaa
aagattttcaggatGGTAtaatattatgaatagattgaacatattaaatt
ttgaggggatttagcgttcgacagaacttaagaaaagctcaaaaaaccaa
cttcccctaaggaaacgcaggctaaaacgggtttgtttacctccagagac
caaatggtggagagcatcaaaataatgcgcgcgcattagttttacgaatt
acgggaaaggtgtattgaaatCCATTTATCTCTGGCAAAGGGTGGAAATG
GTGATAGTTCGTCAGCCAGTTCCAGGGTATtaggaatgtttttttttcag
atgttaatgtaaaaaagagatttttcaaaatgaaagggTGGATAATtgag
gttttttttttatattctgTTTACTTGCTTATTGTCGTAAAAGCAgccga
gatggagtttttacaagctcttatttgattggttgctcgttaaccagtaa
taaaacaattttgttactttttctaaagagtgcgtcattttttattgttt
caaatgactaattattaaagtatcttataaaaattcCATCCCTTCTGCAT
CAATTGAAATCCATACATCTCGGGCAAAGGATGGAAATGGTGATAGTTCG
TCAGCCAAATTATACAGGATATTAGGAATGTTTtaggaatgttttttttt
tcagatgtcTATGTAAAAgggagatttttcaaaatgaaagggTGGAAAAT
CGAAGCTTGTCTTTTTCTAAGGTTGAATCTTATGATATTCTTGTTTACTC
GCTTATTGTCATAAAAGAAGCCATTTTCTGAAACTAGAGACTGACTGAGT
TTGTTCTTGATTATTTCTTGGATTTTGACCAAAATAGAGCATCGTGTTCt
tagtaaaataatttttcataaaaacctTATATTTCATGATCTGCACCGCT
GAAAATGTAGTTCATTATGCTAGACGACTATTTCAGACATGGAGTAATTC
AGATATagtagaaaataagcaaaaaatcatgaaaggAACAAAGTGTATTC
TTAACAAACTGATTTTACCCTGTAataattatcgtattatcatctaaagt
ctgtctcaatataatttgcagcggagacaaaaaaggctgtaattttttct
tctttttcattttcaatcttcatttcCCGATATTTTTTAACTTATTTCTT
TATGCTAATTaataataattaataataattCTCTCAGAAGTTATAGGCTt
gtttgtctccgctgcaaattatattgagacagactttaacaCTCATGTTA
CTGTATTAGACTGATTATAAACGAGtctaattttcttttctatCTTTTCA
GTACGAGAAGAGTTTTGCTGTGAACGTTCAATCCATACAAGCGAACTGTG
CATCGTTGGAAAGTCGAATCACCGAACTCATGAAGAAAGTCGGTAGTTAA
TAATGTTGAACGATGGAGTTCAGTGCTCATGTTAACATAGGAAATTTCCG
AGATGTACCTAGTACTTATTTTTATAAAGACTCTTTACAATTTATTCTGT
TTGTAAATACTGGACTTAAATTTCTGCTTGttatctattcatgatatgca
ccattgcaatgtcttctgacattacatcatggacccaatagctTTATGTA
AGTGACGTGAAATcggtcaatacgtcactttcaactttcaaataGTCCAC
AAATGCTTTTACTACATTGATTGATCCGGGTGAGGCAATCGATCTGAAAA
TAACCGTATGTACGAACGAATAGTTTACCCTGAGCCCCCAACCCCCTGGA
TTGATCGTATGAGTCACGCCCAAAACTCTACTAAACCTATTTTGTGTGCT
GTGCAACAGCATTTCTACAACTTACTTATTTCTATAGTCTTTGTCATATG
AGATTGGTATTAGGTGGGGTGTGTAAGCCCgattgaaatcaaaaaatatt
tga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015826XLOC_015826Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027967-exon-sc0000660-1491911889:230..354TCONS_00027967-exon-sc0000660-1491911889:230..354Clytia hemisphaericaexon
TCONS_00027967-exon-sc0000660-1510915933:230..354TCONS_00027967-exon-sc0000660-1510915933:230..354Clytia hemisphaericaexon
TCONS_00027967-exon-sc0000660-1575043694:230..354TCONS_00027967-exon-sc0000660-1575043694:230..354Clytia hemisphaericaexon
TCONS_00027967-exon-sc0000660-1491911889:641..703TCONS_00027967-exon-sc0000660-1491911889:641..703Clytia hemisphaericaexon
TCONS_00027967-exon-sc0000660-1510915933:641..703TCONS_00027967-exon-sc0000660-1510915933:641..703Clytia hemisphaericaexon
TCONS_00027967-exon-sc0000660-1575043694:641..703TCONS_00027967-exon-sc0000660-1575043694:641..703Clytia hemisphaericaexon
TCONS_00027967-exon-sc0000660-1491911889:3423..3462TCONS_00027967-exon-sc0000660-1491911889:3423..3462Clytia hemisphaericaexon
TCONS_00027967-exon-sc0000660-1510915933:3423..3462TCONS_00027967-exon-sc0000660-1510915933:3423..3462Clytia hemisphaericaexon
TCONS_00027967-exon-sc0000660-1575043694:3423..3462TCONS_00027967-exon-sc0000660-1575043694:3423..3462Clytia hemisphaericaexon
TCONS_00027967-exon-sc0000660-1491911889:3957..4048TCONS_00027967-exon-sc0000660-1491911889:3957..4048Clytia hemisphaericaexon
TCONS_00027967-exon-sc0000660-1510915933:3957..4048TCONS_00027967-exon-sc0000660-1510915933:3957..4048Clytia hemisphaericaexon
TCONS_00027967-exon-sc0000660-1575043694:3957..4048TCONS_00027967-exon-sc0000660-1575043694:3957..4048Clytia hemisphaericaexon
TCONS_00027967-exon-sc0000660-1491911889:5531..6132TCONS_00027967-exon-sc0000660-1491911889:5531..6132Clytia hemisphaericaexon
TCONS_00027967-exon-sc0000660-1510915933:5531..6132TCONS_00027967-exon-sc0000660-1510915933:5531..6132Clytia hemisphaericaexon
TCONS_00027967-exon-sc0000660-1575043694:5531..6132TCONS_00027967-exon-sc0000660-1575043694:5531..6132Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000660supercontigsc0000660:230..6132 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
25.1812	27.9551	13.6606	9.53721	48.264	38.82	69.1971	79.0613	33.7784	36.9972	25.8509	24.6228	22.5727	18.187	21.1143	20.5824	28.0256	28.8232	18.4916	26.7847	17.8358	18.0797	23.6223	25.8817	44.3225	54.3383	36.8663	24.4713	27.1494	29.0758
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027967 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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