TCONS_00027962 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027962
Unique NameTCONS_00027962
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length641

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027962 ID=TCONS_00027962|Name=TCONS_00027962|organism=Clytia hemisphaerica|type=transcript|length=641bp
ATTTGCTCTATTGATCAAGATAAAGAACGGCTGACTTGTGTTAAATGCAA
GCGAAGCGTTCACTATAGATGTACAATGCTTCCAGCATACCAAATTCAAC
AATTTATTGATAAGTCCAAAAGTACCCACTACCGTTACACTTGCCAAAAC
TGCGTCGAAGTTAAACCAGCACTCCGCACCCTCATCCCAGCTAGACGACG
CCAATCATCCCTCAAACTTGAACAAGAGGTTGAGAGCCTAAGAAGAGAGC
TAGAAGCATGTAAGGGGATTCTGAAACAGAACGAGGTTGACAGAGTTACA
ATGGTATCTCAAGAGAAAGAGCTTACAactctaaaagaaaaacttaacaA
AGATCCTGGTTTCCATACTATCGAGTATGTTGAACAAAAGTTCGAAGAAA
AACTCGAATCACTAAAACCATCCATTAAAGAGATGATCCAACAAACAATC
AAATCAGAATGCAAATTACTTACAGAGAAAACATACGCATCTGTGACCTC
TTCCAACGTCACCAATCTTGTCACCCCGAATCAAGAATCACTGAAGGAAG
TCATTAAAGATGCATGGCGTGAGAAGGGTGCAGAAGAAGATGATAAAAGA
AAGCGTGCACCAAATGTTATTGTTCATGGTCTACCAGAAAA
Run BLAST on NCBI

protein sequence of TCONS_00027962-protein

>TCONS_00027962-protein ID=TCONS_00027962-protein|Name=TCONS_00027962-protein|organism=Clytia hemisphaerica|type=polypeptide|length=213bp
ICSIDQDKERLTCVKCKRSVHYRCTMLPAYQIQQFIDKSKSTHYRYTCQN
CVEVKPALRTLIPARRRQSSLKLEQEVESLRRELEACKGILKQNEVDRVT
MVSQEKELTTLKEKLNKDPGFHTIEYVEQKFEEKLESLKPSIKEMIQQTI
KSECKLLTEKTYASVTSSNVTNLVTPNQESLKEVIKDAWREKGAEEDDKR
KRAPNVIVHGLPE
Run BLAST on NCBI

transcript from alignment at sc0000658:177354..177994

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027962 ID=TCONS_00027962|Name=TCONS_00027962|organism=Clytia hemisphaerica|type=transcript|length=641bp|location=Sequence derived from alignment at sc0000658:177354..177994 (Clytia hemisphaerica)
TTTTCTGGTAGACCATGAACAATAACATTTGGTGCACGCTTTCTTTTATC
ATCTTCTTCTGCACCCTTCTCACGCCATGCATCTTTAATGACTTCCTTCA
GTGATTCTTGATTCGGGGTGACAAGATTGGTGACGTTGGAAGAGGTCACA
GATGCGTATGTTTTCTCTGTAAGTAATTTGCATTCTGATTTGATTGTTTG
TTGGATCATCTCTTTAATGGATGGTTTTAGTGATTCGAGTTTTTCTTCGA
ACTTTTGTTCAACATACTCGATAGTATGGAAACCAGGATCTTtgttaagt
ttttcttttagagtTGTAAGCTCTTTCTCTTGAGATACCATTGTAACTCT
GTCAACCTCGTTCTGTTTCAGAATCCCCTTACATGCTTCTAGCTCTCTTC
TTAGGCTCTCAACCTCTTGTTCAAGTTTGAGGGATGATTGGCGTCGTCTA
GCTGGGATGAGGGTGCGGAGTGCTGGTTTAACTTCGACGCAGTTTTGGCA
AGTGTAACGGTAGTGGGTACTTTTGGACTTATCAATAAATTGTTGAATTT
GGTATGCTGGAAGCATTGTACATCTATAGTGAACGCTTCGCTTGCATTTA
ACACAAGTCAGCCGTTCTTTATCTTGATCAATAGAGCAAAT

Coding sequence (CDS) from alignment at sc0000658:177354..177994

>TCONS_00027962 ID=TCONS_00027962|Name=TCONS_00027962|organism=Clytia hemisphaerica|type=CDS|length=639bp|location=Sequence derived from alignment at sc0000658:177354..177994 (Clytia hemisphaerica)
TTCTGGTAGACCATGAACAATAACATTTGGTGCACGCTTTCTTTTATCAT
CTTCTTCTGCACCCTTCTCACGCCATGCATCTTTAATGACTTCCTTCAGT
GATTCTTGATTCGGGGTGACAAGATTGGTGACGTTGGAAGAGGTCACAGA
TGCGTATGTTTTCTCTGTAAGTAATTTGCATTCTGATTTGATTGTTTGTT
GGATCATCTCTTTAATGGATGGTTTTAGTGATTCGAGTTTTTCTTCGAAC
TTTTGTTCAACATACTCGATAGTATGGAAACCAGGATCTTtgttaagttt
ttcttttagagtTGTAAGCTCTTTCTCTTGAGATACCATTGTAACTCTGT
CAACCTCGTTCTGTTTCAGAATCCCCTTACATGCTTCTAGCTCTCTTCTT
AGGCTCTCAACCTCTTGTTCAAGTTTGAGGGATGATTGGCGTCGTCTAGC
TGGGATGAGGGTGCGGAGTGCTGGTTTAACTTCGACGCAGTTTTGGCAAG
TGTAACGGTAGTGGGTACTTTTGGACTTATCAATAAATTGTTGAATTTGG
TATGCTGGAAGCATTGTACATCTATAGTGAACGCTTCGCTTGCATTTAAC
ACAAGTCAGCCGTTCTTTATCTTGATCAATAGAGCAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015821XLOC_015821Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027962-exon-sc0000658-1491911889:177354..177994TCONS_00027962-exon-sc0000658-1491911889:177354..177994Clytia hemisphaericaexon
TCONS_00027962-exon-sc0000658-1510915933:177354..177994TCONS_00027962-exon-sc0000658-1510915933:177354..177994Clytia hemisphaericaexon
TCONS_00027962-exon-sc0000658-1575043694:177354..177994TCONS_00027962-exon-sc0000658-1575043694:177354..177994Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027962-proteinTCONS_00027962-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000658supercontigsc0000658:177354..177994 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.656995	0.480505	0.464927	0.636802	3.21173	3.67566	0.316752	0.889617	0	0.171442	0.166406	0.0546944	0	0.283609	0.139899	0.250221	0.0616505	0.442328	0.5238	0.365413	0.31761	0	0.188324	0.342429	0	0.472156	0.337827	0.120179	0.364607	0.278607
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR011011Znf_FYVE_PHD
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027962 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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