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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027952 ID=TCONS_00027952|Name=TCONS_00027952|organism=Clytia hemisphaerica|type=transcript|length=1530bp
CGTGTGGAGGCAGCAGTCTTACAGGGCATTACTCAAGAAACATGTACAGA
TATCCCTAGTGATTGGAACAGACCAAAAACCAAAAAGCAAGTAAAACCAG
GAAAACTATCGAATTTTTTGATCAAACAGGATCGATTAGACAAGAGATTT
TCTGAGCAATCAtcgttgaaaaagaaaaaagcagcTCAACAAGCTAGAAT
TAACTATAACCCAGCCCCAAGCCCTCTCAAAATGAATAtagcaaacaaaa
aattaatgagAATGAAACTCTTCAATGCAACGAGACAAATTGTCCCACAA
TCTACATTTATTGAAACATATGAAGGCAAAGAAAAACctagaaaaatcaa
acataaaaatacaaaacacgTTGAAACTTTGGAAGAAATCGCTAATAAAT
CCATAACATATGCTAATGAAAAAGATGGAGACAAATGTGCAGCACAATat
atcaataaaataaaatcaatgaCTGTTGAAGACATGAAATCAGTGTGTAT
TTTGACCGAAAAACAAAGCAGTAGTAAAGTATGGTTCGCTCAAAGGAAAG
GACGAATTACAGCGTCGAAATTTCGACGAGTTTACACAAAAATGAACTCT
CTTAAAAGGGATGAAAATAAAGATCATACAAAGCTTGTATCTGACCTTAT
GGGATACATtgaaaaaccactatcagaTGACATGAGATTCGGAATCAGTA
TGGAGATGCATGCAAAAAAGATATACAGGTCTAAAAACgctaaaacacac
aaaaatcTGAAAGTAAAGGAAAGTGGACTGGTTATCTTGGAGTCTCATCC
ATGGATTGGGGCTTCACCAGATCTACTGGTTGAATGTGATTGTCATGGAT
TAGGACTGGTAGAGATAAAATGTCCAGGTTCCATAAGAAATCAAGCTCCA
ACGTCATCTAATtacaaacatttaaaaagtatCAACGGTAaagatatttt
gaatatttctagTGAATATTATTGTCAAATACAAGGTCAAATGGCACTCA
CCAAGCGAAGTTACACAGACTTTTTTGTCCTAACACTCAAAGGATATCAT
TGCTCACGTATCTACTTTGATAAAGACTTTTGGGACTctgttttaaaaaa
tcttgatgAATTTTGGAGAACATACATGGTACCagaacttttatttaaaa
atgtttatcgaATGAATGAAGCAGACAATGGAAAATTATTAATCGAAAAA
CcagaagaaaaagttgaaagtaATGATGATATTTTTACTCTTGGTAGACT
TGGGAAAGTGCCTATTCAACAGAAAATTGATATTGTACtaacaaaagaat
aaaaagtaaCTCCTAGAATTTAACTTCAACAACGACTTATAATTCTAAGA
CTTTCAACTTGTTTATACTTGATTTTTGAAGAGTAAAACTAGATTAATag
tattttttctactttttattcCTCAAATATATTGACCAGAAGTGGTTTAG
TTTTTCAAGAAGCTTTATATTGCTGGCTTTCTTGTTGTTAaaagcaagat
tttttaaatgtttaaacaTGTGTATAATAT Run BLAST on NCBI protein sequence of TCONS_00027952-protein >TCONS_00027952-protein ID=TCONS_00027952-protein|Name=TCONS_00027952-protein|organism=Clytia hemisphaerica|type=polypeptide|length=433bp
RVEAAVLQGITQETCTDIPSDWNRPKTKKQVKPGKLSNFLIKQDRLDKRF
SEQSSLKKKKAAQQARINYNPAPSPLKMNIANKKLMRMKLFNATRQIVPQ
STFIETYEGKEKPRKIKHKNTKHVETLEEIANKSITYANEKDGDKCAAQY
INKIKSMTVEDMKSVCILTEKQSSSKVWFAQRKGRITASKFRRVYTKMNS
LKRDENKDHTKLVSDLMGYIEKPLSDDMRFGISMEMHAKKIYRSKNAKTH
KNLKVKESGLVILESHPWIGASPDLLVECDCHGLGLVEIKCPGSIRNQAP
TSSNYKHLKSINGKDILNISSEYYCQIQGQMALTKRSYTDFFVLTLKGYH
CSRIYFDKDFWDSVLKNLDEFWRTYMVPELLFKNVYRMNEADNGKLLIEK
PEEKVESNDDIFTLGRLGKVPIQQKIDIVLTKE Run BLAST on NCBI transcript from alignment at sc0000658:88032..89561 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027952 ID=TCONS_00027952|Name=TCONS_00027952|organism=Clytia hemisphaerica|type=transcript|length=1530bp|location=Sequence derived from alignment at sc0000658:88032..89561 (Clytia hemisphaerica)
ATATTATACACAtgtttaaacatttaaaaaatcttgctttTAACAACAAG
AAAGCCAGCAATATAAAGCTTCTTGAAAAACTAAACCACTTCTGGTCAAT
ATATTTGAGgaataaaaagtagaaaaaatactATTAATCTAGTTTTACTC
TTCAAAAATCAAGTATAAACAAGTTGAAAGTCTTAGAATTATAAGTCGTT
GTTGAAGTTAAATTCTAGGAGttactttttattcttttgttaGTACAATA
TCAATTTTCTGTTGAATAGGCACTTTCCCAAGTCTACCAAGAGTAAAAAT
ATCATCATtactttcaactttttcttctgGTTTTTCGATTAATAATTTTC
CATTGTCTGCTTCATTCATtcgataaacatttttaaataaaagttctGGT
ACCATGTATGTTCTCCAAAATTcatcaagattttttaaaacagAGTCCCA
AAAGTCTTTATCAAAGTAGATACGTGAGCAATGATATCCTTTGAGTGTTA
GGACAAAAAAGTCTGTGTAACTTCGCTTGGTGAGTGCCATTTGACCTTGT
ATTTGACAATAATATTCActagaaatattcaaaatatcttTACCGTTGat
actttttaaatgtttgtaATTAGATGACGTTGGAGCTTGATTTCTTATGG
AACCTGGACATTTTATCTCTACCAGTCCTAATCCATGACAATCACATTCA
ACCAGTAGATCTGGTGAAGCCCCAATCCATGGATGAGACTCCAAGATAAC
CAGTCCACTTTCCTTTACTTTCAgatttttgtgtgttttagcGTTTTTAG
ACCTGTATATCTTTTTTGCATGCATCTCCATACTGATTCCGAATCTCATG
TCAtctgatagtggtttttcaATGTATCCCATAAGGTCAGATACAAGCTT
TGTATGATCTTTATTTTCATCCCTTTTAAGAGAGTTCATTTTTGTGTAAA
CTCGTCGAAATTTCGACGCTGTAATTCGTCCTTTCCTTTGAGCGAACCAT
ACTTTACTACTGCTTTGTTTTTCGGTCAAAATACACACTGATTTCATGTC
TTCAACAGtcattgattttattttattgatatATTGTGCTGCACATTTGT
CTCCATCTTTTTCATTAGCATATGTTATGGATTTATTAGCGATTTCTTCC
AAAGTTTCAAcgtgttttgtatttttatgtttgatttttctagGTTTTTC
TTTGCCTTCATATGTTTCAATAAATGTAGATTGTGGGACAATTTGTCTCG
TTGCATTGAAGAGTTTCATTctcattaattttttgtttgctaTATTCATT
TTGAGAGGGCTTGGGGCTGGGTTATAGTTAATTCTAGCTTGTTGAgctgc
ttttttctttttcaacgaTGATTGCTCAGAAAATCTCTTGTCTAATCGAT
CCTGTTTGATCAAAAAATTCGATAGTTTTCCTGGTTTTACTTGCTTTTTG
GTTTTTGGTCTGTTCCAATCACTAGGGATATCTGTACATGTTTCTTGAGT
AATGCCCTGTAAGACTGCTGCCTCCACACG Coding sequence (CDS) from alignment at sc0000658:88032..89561 >TCONS_00027952 ID=TCONS_00027952|Name=TCONS_00027952|organism=Clytia hemisphaerica|type=CDS|length=1302bp|location=Sequence derived from alignment at sc0000658:88032..89561 (Clytia hemisphaerica)
ttattcttttgttaGTACAATATCAATTTTCTGTTGAATAGGCACTTTCC
CAAGTCTACCAAGAGTAAAAATATCATCATtactttcaactttttcttct
gGTTTTTCGATTAATAATTTTCCATTGTCTGCTTCATTCATtcgataaac
atttttaaataaaagttctGGTACCATGTATGTTCTCCAAAATTcatcaa
gattttttaaaacagAGTCCCAAAAGTCTTTATCAAAGTAGATACGTGAG
CAATGATATCCTTTGAGTGTTAGGACAAAAAAGTCTGTGTAACTTCGCTT
GGTGAGTGCCATTTGACCTTGTATTTGACAATAATATTCActagaaatat
tcaaaatatcttTACCGTTGatactttttaaatgtttgtaATTAGATGAC
GTTGGAGCTTGATTTCTTATGGAACCTGGACATTTTATCTCTACCAGTCC
TAATCCATGACAATCACATTCAACCAGTAGATCTGGTGAAGCCCCAATCC
ATGGATGAGACTCCAAGATAACCAGTCCACTTTCCTTTACTTTCAgattt
ttgtgtgttttagcGTTTTTAGACCTGTATATCTTTTTTGCATGCATCTC
CATACTGATTCCGAATCTCATGTCAtctgatagtggtttttcaATGTATC
CCATAAGGTCAGATACAAGCTTTGTATGATCTTTATTTTCATCCCTTTTA
AGAGAGTTCATTTTTGTGTAAACTCGTCGAAATTTCGACGCTGTAATTCG
TCCTTTCCTTTGAGCGAACCATACTTTACTACTGCTTTGTTTTTCGGTCA
AAATACACACTGATTTCATGTCTTCAACAGtcattgattttattttattg
atatATTGTGCTGCACATTTGTCTCCATCTTTTTCATTAGCATATGTTAT
GGATTTATTAGCGATTTCTTCCAAAGTTTCAAcgtgttttgtatttttat
gtttgatttttctagGTTTTTCTTTGCCTTCATATGTTTCAATAAATGTA
GATTGTGGGACAATTTGTCTCGTTGCATTGAAGAGTTTCATTctcattaa
ttttttgtttgctaTATTCATTTTGAGAGGGCTTGGGGCTGGGTTATAGT
TAATTCTAGCTTGTTGAgctgcttttttctttttcaacgaTGATTGCTCA
GAAAATCTCTTGTCTAATCGATCCTGTTTGATCAAAAAATTCGATAGTTT
TCCTGGTTTTACTTGCTTTTTGGTTTTTGGTCTGTTCCAATCACTAGGGA
TATCTGTACATGTTTCTTGAGTAATGCCCTGTAAGACTGCTGCCTCCACA
CG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027952-exon-sc0000658-1491911889:88032..89561 | TCONS_00027952-exon-sc0000658-1491911889:88032..89561 | Clytia hemisphaerica | exon |
| TCONS_00027952-exon-sc0000658-1510915933:88032..89561 | TCONS_00027952-exon-sc0000658-1510915933:88032..89561 | Clytia hemisphaerica | exon |
| TCONS_00027952-exon-sc0000658-1575043694:88032..89561 | TCONS_00027952-exon-sc0000658-1575043694:88032..89561 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000658 | supercontig | sc0000658:88032..89561 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004518 | nuclease activity |
| GO:0003677 | DNA binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003677 |
DNA binding |
| molecular_function |
GO:0004518 |
nuclease activity |
Blast
The following BLAST results are available for this feature:
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