TCONS_00027947 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027947
Unique NameTCONS_00027947
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length508

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027947 ID=TCONS_00027947|Name=TCONS_00027947|organism=Clytia hemisphaerica|type=transcript|length=508bp
TGTCAGTATTTTATCAGTAAAAAGACAACATGTACATATTTTTACCAGCT
ATCCTAGACCTGTACATTTTACACCATAGCATTTTATCATGGTAaatata
tctatctatctatctattaaaagttcgacaaagttcgattggATTCCAGA
CAACATTTCTGACAGACAGACGTTAGCAGCCCACCCATGCCAAAGAAGTA
GGGGAGGTTAAAGTACTCAAAATTAATTCTATATATACATCCTTACCTAC
catcaaattcaaaaattttaacataAACAGACAACTTACACCACCACACG
CGGGAAGGTACATTACACCGGCCATGTGCAAAGTCGAAGAAAACCATGTA
AACAAATCAGAATTTAAAACACTGACCTgtaacttttacaaaatttttta
atacttTCTCTTTATCATTTTTAGTAAAACTAACTTGCAACgttaatatt
aaaaataaatattctcaATTAGTGATTTTCTTTAGATGAATGAAAtactc
aatatttt
Run BLAST on NCBI

transcript from alignment at sc0000658:982..1489

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027947 ID=TCONS_00027947|Name=TCONS_00027947|organism=Clytia hemisphaerica|type=transcript|length=508bp|location=Sequence derived from alignment at sc0000658:982..1489 (Clytia hemisphaerica)
aaaatattgagtaTTTCATTCATCTAAAGAAAATCACTAATtgagaatat
ttatttttaatattaacGTTGCAAGTTAGTTTTACTAAAAATGATAAAGA
GAaagtattaaaaaattttgtaaaagttacAGGTCAGTGTTTTAAATTCT
GATTTGTTTACATGGTTTTCTTCGACTTTGCACATGGCCGGTGTAATGTA
CCTTCCCGCGTGTGGTGGTGTAAGTTGTCTGTTtatgttaaaatttttga
atttgatgGTAGGTAAGGATGTATATATAGAATTAATTTTGAGTACTTTA
ACCTCCCCTACTTCTTTGGCATGGGTGGGCTGCTAACGTCTGTCTGTCAG
AAATGTTGTCTGGAATccaatcgaactttgtcgaacttttaatagataga
tagatagatatattTACCATGATAAAATGCTATGGTGTAAAATGTACAGG
TCTAGGATAGCTGGTAAAAATATGTACATGTTGTCTTTTTACTGATAAAA
TACTGACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015806XLOC_015806Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027947-exon-sc0000658-1491911889:982..1489TCONS_00027947-exon-sc0000658-1491911889:982..1489Clytia hemisphaericaexon
TCONS_00027947-exon-sc0000658-1510915933:982..1489TCONS_00027947-exon-sc0000658-1510915933:982..1489Clytia hemisphaericaexon
TCONS_00027947-exon-sc0000658-1575043694:982..1489TCONS_00027947-exon-sc0000658-1575043694:982..1489Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000658supercontigsc0000658:982..1489 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.268694	0.262875	0.160012	0	0	0	0	0.123851	0	0.23707	0	0	0	0	0	0.0912976	0	0.131989	0	0	0	0	0	0.341089	0.162699	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027947 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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