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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027943 ID=TCONS_00027943|Name=TCONS_00027943|organism=Clytia hemisphaerica|type=transcript|length=579bp
TTTGGATTCTTTTCCTTTGAATCCATACTTGCAATTGCCATTCTTGTAGA
AACAACAAGTTCTATTACTGCTTCCAGAATCATCTTGTTGATTCTGGTTA
TTTGTTTCTCTTGTATTAATCTCTTTATCCTTAGCATCTTGAGTTGACAG
CAGGACAACATCTTCAGTGTCTGTCTCTAAAAATTCTGTTGGTCTGTCTT
GACTTGGGATAGATGGTGCAGCATCTTTagtgacttttttctttttcctt
ttattgTCACCGTCACTGTTTGTGTTAGGTTGACAAGCATGACAAATGTA
GAACATTCCAGGCAGATTTAGAGGGTTATACAAGCTTTAGAAGAGTTCAG
CGTCGGTGTCCTCATCAATATTGGTGTTGTTTGTGGGAATCGTAGCAAGA
TTTAACCAACATGGTTTGTGTACACCTTGACCACAAACGGCACATTCAAG
GATCGGGAGCTCCATAAGACCAATTTTATATCTTCTGTTTCAGATGGAGC
AATTATCCGTTAAGAGGTTTTGTATCTTGCAGATGATCAGATGTGACAAT
GATCTTTTggttttttcattatattttgg Run BLAST on NCBI transcript from alignment at sc0000658:14683..16229+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027943 ID=TCONS_00027943|Name=TCONS_00027943|organism=Clytia hemisphaerica|type=transcript|length=1547bp|location=Sequence derived from alignment at sc0000658:14683..16229+ (Clytia hemisphaerica)
TTTGGATTCTTTTCCTTTGAATCCATACTTGCAATTGCCATTCTTGTAGA
AACAACAAGTTCTATTACTGCTTCCAGAATCATCTTGTTGATTCTGGTTA
TTTGTTTCTCTTGTATTAATCTCTTTATCCTTAGCATCTTGAGTTGACAG
CAGGACAACATCTTCAGTGTCTGTCTCTAAAAATTCTGTTGGTCTGTCTT
GACTTGGGATAGATGGTGCAGCATCTTTagtgacttttttctttttcctt
ttattgTCACCGTCACTGTTTGTGTTAGGTTGACAAGCATGACAAATGTA
GAACATTCCAGGCAGATTTAGAGGGTTATACAAGCTTTAGAAGAGTTCAG
CGTCGGTGTCCTCATCAATATTGGTGTTGTTTGTGGGAATCGTAGCAAGA
TTTAACCAACATGGTTTGTGTACACCTTGACAACAAACGGCACATTCAAG
GATCGGGAGCTCCATAAGACCAATTTTATATCTTCTGTTTCAGATGGAGC
AATTATCCGTTAAGAGGTTTTGTATCTTGCAGATGATCAGATGTGACAAT
GATCTTTTggttttttcattatattttggAACTTTCAAGAAGTTTGCAAT
TTCTTTCAAGGTGTCAAgtttttctttgtacatatcATTTTCAATATCTA
GTACACTTTTGCCATACTGATACTTCCGGAAACAGAATTTTACAGAATCC
AAGGAAGCATAAAAACAAAAGTTCTGCTATTAGATCCTCAGTTTCCAATT
CTTTGGTACATTTTTGGGACTGATCACCCTCAGGGGAATTATCACTTTGA
TCCATGATAAATGGAGTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
GTGGGAATCGTAGCAAGATTTAACCAACATGGTTTGTGTACACCTTGACC
ACAAACGGCACATTCAAGGATCGGGAGCTCCATAAGACCAATTTTATATC
TTCTGTTTCAGATGGAGCAATTATCCGTTAAGAGGTTTTGTATCTTGCAG
ATGATCAGATGTGACAATGATCTTTTggttttttcattatattttgg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027943-exon-sc0000658-1491911889:14683..15092 | TCONS_00027943-exon-sc0000658-1491911889:14683..15092 | Clytia hemisphaerica | exon |
| TCONS_00027943-exon-sc0000658-1510915933:14683..15092 | TCONS_00027943-exon-sc0000658-1510915933:14683..15092 | Clytia hemisphaerica | exon |
| TCONS_00027943-exon-sc0000658-1575043694:14683..15092 | TCONS_00027943-exon-sc0000658-1575043694:14683..15092 | Clytia hemisphaerica | exon |
| TCONS_00027943-exon-sc0000658-1491911889:16061..16229 | TCONS_00027943-exon-sc0000658-1491911889:16061..16229 | Clytia hemisphaerica | exon |
| TCONS_00027943-exon-sc0000658-1510915933:16061..16229 | TCONS_00027943-exon-sc0000658-1510915933:16061..16229 | Clytia hemisphaerica | exon |
| TCONS_00027943-exon-sc0000658-1575043694:16061..16229 | TCONS_00027943-exon-sc0000658-1575043694:16061..16229 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000658 | supercontig | sc0000658:14683..16229 + |
Blast
The following BLAST results are available for this feature:
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