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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027937 ID=TCONS_00027937|Name=TCONS_00027937|organism=Clytia hemisphaerica|type=transcript|length=1782bp
TTTTAGAGCTGTAAGTCTAGTGACATTTAAAGATGAAGATTAGACATTTT
CAAAGACTAGCTGTTTTGGCTATTATGTTACAAAGCTTTGGGAATGTTGT
CGGCAACATTGGTAACGACTTAATCATCGGAGCTTGTAAAGAAAAAGCCT
CATTAGATTGCAACAAAATGGTGTCTCAAAATCCAGACCTTGATTACAGA
ATGTGCTGGGAAAAGAAATTCGCATTGTGCTACTCAGCATGGAAACAAGT
TATCAAGGGAACCAATCGAGATAATGTGTTTTGTGTAATGGTAAAGAAAC
AAGACATCGTGATatgttattttgatgaaaatgaacaTACAGTTTGTGTT
GAAGTGGTCTATGAAGTCGAAGAATGCATTTGAAAAACTGATTTGTTTGA
TTTATTATAAGGTTTATATGAGGTGAAGGTTATAAGAAAATGTGTGATTT
GTGTATAATTCCGGGAAGGAGGTACGTAGACACTTAACGATTTTTTACAG
TTTGATATTACCGGGGTAGAGTATTTTACACAACCctgaataacttttga
tctagttgatATTTTTGGACCAAATTTGGAAACGATTTTGCTTACCACAA
TATAAACCCACATATAAACCCATAGAAAGAATTTCGATTCGGTGACGTCA
TTTAATCTTTGATAACGTCATCACGAAATGACAACTGTCATCTAACCGAT
AAAAAAACTGTACCTGAGATAAACATTAATTGAAAACGATCTAGAAAAGA
TCTTTAGTCCTGTTTGAAAGGTACTGAAAAGGTCTATAACATATTTGCCG
ATTTTTTGGTATACCATCAATTTTAAATCCTAAAAtttgcttaaccctat
tcgtattAAGGGGGTCTATTTCTGTTTGGGGATGAAACTAATGCTAagag
ctcctgaaataatagagcttttggcatgcattttctgtaaatttctGACG
Tttatttaacttaaaaaaaaattgatacctaaaactttcacaccttgagc
atgatgatatctctgacagtaaggtgtcacaaaaattgacagttTTCTAT
taacaaattcattttttgtgtcaaatatatcgtttaaatcGTGATTTTAT
TAAATATTAATTTAGGATAAGATAAGCATCTTAAGACTCAGGGAACTTTT
ATCTAAAACCTTTGTTAGAATACGATAGCTATTAATattaagaacaaagg
aatttctcGGATTTTGCTCATAAAATTACGCTATTAGACAAGGaccttgt
gtgccaaatttcatccaaaaagcctcactagatcaaaagttaaggtgTCG
TACAGGAACAGCCCCCTAGTTTtaaaccgcccctaaaagcccaAGAGGAA
TAGGGCTAAGATGAGTAAAATGACGTTatcatttcttgaaaatttttaca
ttaaatttTGATTATCTCTGAAACCtatgaaaatatgaaagaattcgaat
aaatttggataaacattttaaaacattttagtCATGAGTAAATTTGTAGA
CTTTAATTTTGGGTGGTGTAAAATACCTCCTGGTAAAAATAGGGTTAATT
TAATAATATACTGTTGATGGGGCTCTGTGTGGGTATGTTTTTAAGGATTC
TAATGTGCAATGTGAGAGTCGATATGCAAGACTATGTGTACTGATCGGAA
ATAGAagttattgaatatttcgattatttttacctttaattcaaaaaatc
tCAATAAATTTTATATCTGCACTGTAAGCAACATatattttttcagcttt
taaatTGTCAATAATTTGTTTGGTTACCGGTA Run BLAST on NCBI protein sequence of TCONS_00027937-protein >TCONS_00027937-protein ID=TCONS_00027937-protein|Name=TCONS_00027937-protein|organism=Clytia hemisphaerica|type=polypeptide|length=116bp
MKIRHFQRLAVLAIMLQSFGNVVGNIGNDLIIGACKEKASLDCNKMVSQN
PDLDYRMCWEKKFALCYSAWKQVIKGTNRDNVFCVMVKKQDIVICYFDEN
EHTVCVEVVYEVEECI Run BLAST on NCBI transcript from alignment at sc0000657:14998..16779 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027937 ID=TCONS_00027937|Name=TCONS_00027937|organism=Clytia hemisphaerica|type=transcript|length=1782bp|location=Sequence derived from alignment at sc0000657:14998..16779 (Clytia hemisphaerica)
TACCGGTAACCAAACAAATTATTGACAatttaaaagctgaaaaaatatAT
GTTGCTTACAGTGCAGATATAAAATTTATTGagattttttgaattaaagg
taaaaataatcgaaatattcaataactTCTATTTCCGATCAGTACACATA
GTCTTGCATATCGACTCTCACATTGCACATTAGAATCCTTAAAAACATAC
CCACACAGAGCCCCATCAACAGTATATTATTAAATTAACCCTATTTTTAC
CAGGAGGTATTTTACACCACCCAAAATTAAAGTCTACAAATTTACTCATG
actaaaatgttttaaaatgtttatccaaatttattcgaattctttcatat
tttcataGGTTTCAGAGATAATCAaaatttaatgtaaaaattttcaagaa
atgatAACGTCATTTTACTCATCTTAGCCCTATTCCTCTtgggcttttag
gggcggtttaAAACTAGGGGGCTGTTCCTGTACGAcaccttaacttttga
tctagtgaggctttttggatgaaatttggcacacaaggtCCTTGTCTAAT
AGCGTAATTTTATGAGCAAAATCCgagaaattcctttgttcttaatATTA
ATAGCTATCGTATTCTAACAAAGGTTTTAGATAAAAGTTCCCTGAGTCTT
AAGATGCTTATCTTATCCTAAATTAATATTTAATAAAATCACgatttaaa
cgatatatttgacacaaaaaatgaatttgttaATAGAAaactgtcaattt
ttgtgacaccttactgtcagagatatcatcatgctcaaggtgtgaaagtt
ttaggtatcaatttttttttaagttaaataaACGTCagaaatttacagaa
aatgcatgccaaaagctctattatttcaggagctctTAGCATTAGTTTCA
TCCCCAAACAGAAATAGACCCCCTTaatacgaatagggttaagcaaaTTT
TAGGATTTAAAATTGATGGTATACCAAAAAATCGGCAAATATGTTATAGA
CCTTTTCAGTACCTTTCAAACAGGACTAAAGATCTTTTCTAGATCGTTTT
CAATTAATGTTTATCTCAGGTACAGTTTTTTTATCGGTTAGATGACAGTT
GTCATTTCGTGATGACGTTATCAAAGATTAAATGACGTCACCGAATCGAA
ATTCTTTCTATGGGTTTATATGTGGGTTTATATTGTGGTAAGCAAAATCG
TTTCCAAATTTGGTCCAAAAATatcaactagatcaaaagttattcagGGT
TGTGTAAAATACTCTACCCCGGTAATATCAAACTGTAAAAAATCGTTAAG
TGTCTACGTACCTCCTTCCCGGAATTATACACAAATCACACATTTTCTTA
TAACCTTCACCTCATATAAACCTTATAATAAATCAAACAAATCAGTTTTT
CAAATGCATTCTTCGACTTCATAGACCACTTCAACACAAACTGTAtgttc
attttcatcaaaataacatATCACGATGTCTTGTTTCTTTACCATTACAC
AAAACACATTATCTCGATTGGTTCCCTTGATAACTTGTTTCCATGCTGAG
TAGCACAATGCGAATTTCTTTTCCCAGCACATTCTGTAATCAAGGTCTGG
ATTTTGAGACACCATTTTGTTGCAATCTAATGAGGCTTTTTCTTTACAAG
CTCCGATGATTAAGTCGTTACCAATGTTGCCGACAACATTCCCAAAGCTT
TGTAACATAATAGCCAAAACAGCTAGTCTTTGAAAATGTCTAATCTTCAT
CTTTAAATGTCACTAGACTTACAGCTCTAAAA Coding sequence (CDS) from alignment at sc0000657:14998..16779 >TCONS_00027937 ID=TCONS_00027937|Name=TCONS_00027937|organism=Clytia hemisphaerica|type=CDS|length=351bp|location=Sequence derived from alignment at sc0000657:14998..16779 (Clytia hemisphaerica)
TCAAATGCATTCTTCGACTTCATAGACCACTTCAACACAAACTGTAtgtt
cattttcatcaaaataacatATCACGATGTCTTGTTTCTTTACCATTACA
CAAAACACATTATCTCGATTGGTTCCCTTGATAACTTGTTTCCATGCTGA
GTAGCACAATGCGAATTTCTTTTCCCAGCACATTCTGTAATCAAGGTCTG
GATTTTGAGACACCATTTTGTTGCAATCTAATGAGGCTTTTTCTTTACAA
GCTCCGATGATTAAGTCGTTACCAATGTTGCCGACAACATTCCCAAAGCT
TTGTAACATAATAGCCAAAACAGCTAGTCTTTGAAAATGTCTAATCTTCA
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027937-exon-sc0000657-1491911889:14998..16779 | TCONS_00027937-exon-sc0000657-1491911889:14998..16779 | Clytia hemisphaerica | exon |
| TCONS_00027937-exon-sc0000657-1510915933:14998..16779 | TCONS_00027937-exon-sc0000657-1510915933:14998..16779 | Clytia hemisphaerica | exon |
| TCONS_00027937-exon-sc0000657-1575043694:14998..16779 | TCONS_00027937-exon-sc0000657-1575043694:14998..16779 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000657 | supercontig | sc0000657:14998..16779 . |
Blast
The following BLAST results are available for this feature:
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