TCONS_00027934 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027934
Unique NameTCONS_00027934
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1696

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027934 ID=TCONS_00027934|Name=TCONS_00027934|organism=Clytia hemisphaerica|type=transcript|length=1696bp
CNGCCCTCGCTGCAAAGTTGCGCGTCAAGGGTACCAACAAAGTGGCTATT
AAGATAATGCCCAAACGAAACGAAGCCGAGATTTCAAACGAATTCAAGGC
AATGAGAAGAGCTAAAGGCTCTGCAAATATTGTCGAAATTTACGGCAAAT
TCAATGGTATCGAAAATACCTATCTTATCATGGAATTCTGTCATGGTGGC
GATTTGACCAATCATTTGGAAACCGTTTACAAAGATTCTCCATATCTTAG
TGAATCCAAAGCTAAAGAATACTTCAGGAGTATTGCAACAGGAGTCAAAT
ATTGCCATGATCATGGCATCGCTCATCGCGATCTCAAATTTGAGAACGTC
TTAGTTGACCGATATGGAGTTGTAAAGCTTGCAgATTTCGGATCGGCCGA
ATTTCCCGATCACTATCCCGATGGTCTCCTAGACACATTTATCGGCACAC
CTTCGTACATGGCCCCCGAAGTCGTACTCGGCTACCTCGATAAAGGCCAA
GCGTATGATGGTTACAAGGCAGATAGCTGGAGTGTTGGAATCATCCTGTT
CAAATTGTTGACAGGCAAACAACCCTACGCACCGTTGCCATGGCAACTAC
TCTACAATTTGATTCAAAAGAAGACTTTCAAACAACGTCTTCCAGCGGAT
GTAAACCTAACCCCAGAATGTATCAACCTTCTTGGAAGACTTTTAGACAG
AGATGCGAAAAGCAGAGCATCACTTCAAGAAATATTGGAACATCCGTGGT
TGAAGTTGGAAGAGGTAAAGAAGGTAATCTATGGGGGCGTACGGgctttg
cgatttccgaaataccgaataatttagccaaaatttccgaaatttcataa
aaaaatacttgcaattccgatataCCGATTtgttgggtatttttcctcgt
tttgactaattttccatcaaatttgatttttcatgtatgaattcagaaaa
agggtgacaaaaactttataataccgaaatttagaagcaaaaattcatgg
atttctgataccgaaacaatttaaGAATTCCAAAATACCGAAAGAATTTT
CTCCGATTTCCGACATTCTGAAGAAAAAAGgttcgatttccgcaattccg
aaataccgtacgcccccacaTCTATAAACTCTGATTTTCTAGTGATACCT
TGAAAAAATGTTCTCGTTAGTTTTCAAAAGCCGAGATGTTGAGATGTTCA
ATTAATTACTACAGTTAGGTATCTTATTTTCCACTTAAGTACGAAAACAA
TTAATGAGCCTTGTAAGGAATCACTGTTTCAATTGCCGTAACTACTACCA
AAATACTACTTTTTACTCAACACTGTAGAAGAGAATTTTACAGGTGAAAA
CTCTCAAAgaatctgattatccctttacattttttttattagaacaaaca
ttataagaacataagacttcgatggccaaaatgttaagtacaagttaaga
acattttaaggcttcgttgACTCTAAAANGAACAaacattataagaacat
aagacttcgatggccaaaatgttaagaacaagttaagaacattttaaggc
ttcgtggactctaaaaaactaaatttcttaggagaatggacaaaaatact
aaaaaatagcgaaaataagaacatgataagaacgtttttaggcttaaaac
tcagcCTCACTTACaaggattttattgttttgtttttcatacCTCA
Run BLAST on NCBI

transcript from alignment at sc0000657:72158..76705-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027934 ID=TCONS_00027934|Name=TCONS_00027934|organism=Clytia hemisphaerica|type=transcript|length=4548bp|location=Sequence derived from alignment at sc0000657:72158..76705- (Clytia hemisphaerica)
CNGCCCTCGCTGCAAAGTTGCGCGTCAAGGGTACCAACAAAGTAAGTTTA
AATCTTTTCATACAGTTTTTCTAATAAATGATTTTGCGTTACTTGCAGAA
TTAAATTCTTACCAAGTAAGAATTTTTTAAGATTTTTACTCCTCTTAAAA
ATATTTTTATTGACTATTTATTATTTTACAGATTATTTATTTGTGCTGTA
ATTAGAAAAAAACATCATTAGCGTGAGGATCTTTAGTTTCTATGGATAAC
TTACTTCGTCTTTTTTTAAGGTGGCTATTAAGATAATGCCCAAACGAAAC
GAAGCCGAGATTTCAAACGAATTCAAGGCAATGAGAAGAGCTAAAGGCTC
TGCAAATATTGTAAGTATAGCCTTTATATTACATATTATCATTTTTTTAT
GTTTTGAAGGTTAAGCTTCAGTACGTTTATCATAATGTTTCTGTAGTGGA
AACCACAATCATACACTAAATATTTGAGATAAAGGGGAGTTCCCGGTGTA
ATTTTGAACACCACGATTGATTTTTAAGCGCATTAGTTTTAACTCTGAGT
TTTAACATGAGACTTAAGACTTACGACCTTAGGATCTCAGGATTTAAAAG
CTCAAATTTGCTCGAATGAGGCTTGGAATATAGCCTAGAAGCCACCAAAC
CCCTCTAAAATCGAAATATTCAATGGAAGAAAGTGGAAGTGCTAAAATAG
CAATTCTCGCCCGAACTTTAATTTCTGAAAAACGTTAAAATACACTAAAA
TCTCAATATATTTCGAGGGTGATTGCAGGTTGGGGTTTACTTATGCAACG
GATATACACGTTTTTTTATAAGAACAAACTATATAAGAACGGCTTCGATG
GCCAAATTATTAAGAAAAAGTTAAAAACATTTTAAGGCTTCGTGGGCTCG
CTCTAAAAAGCTTGATTTCTTAGGAAATTGCACAAAAATACTCACAAAAT
GGTGAAGCTAAGAACATCCTGAGAACATTTTTAGGCTCAAAACTCAAAAA
GTTAGGAGAATCCTTAGGCTTCAAAAATTTTGGATATTCTTATAAAAAAA
CGTGTACCTTTTTCACCACCATGAGTTCAAAATAACCAAAATAAAAATAG
CTCTCTTTTTTGGAAATTTGGGAAGATGGCAATTTCTTTGAGATTAGTTA
TATAATGAAATTAATCCCCATTCGCAAATTTATGTGCCGAGTAGAGTCCA
TTTTTCGAAGCTCAGCAGGACCCTGTCGATCAGCAAGGAGAGTAACTCCC
ATCATCATGGCGTTCTTATTTTACAAGCCTAGTGAAATTTAAGCTACTGC
ACACGTGCTAGGCCTGGATAAATAAATAGGTTACCCTGGAAGCTGAGTCG
AGCCTTTTTCATTAATGATAAATCTATACTTTTATACATAGGTCGAAATT
TACGGCAAATTCAATGGTATCGAAAATACCTATCTTATCATGGAATTCTG
TCATGGTGGCGATTTGACCAATCATTTGGAAACCGTTTACAAAGATTCTC
CATATCTTAGTGAATCCAAAGCTAAAGAATACTTCAGGAGTATTGCAACA
GGAGTCAAATATTGCCATGATCATGGCATCGCTCATCGGTGAGTTACTTT
ATAGTTAGCAGAGTTCATCAAATAACTTCCGTCAGTACAAAAATTCAGCT
GTACTCGCTCAAAAGTATTTTGTATTTTTTACGTAGTATAAGTGATTTAA
ACATAAAACGAATTCGCGCAGTAGTTACACCAATCGGTCCTATTAAAATA
CTTTATCCAATGGTATTTTGACTTACCTTGTCTATCCAGACAATTGTGAG
TTATAGGTATAGTTATATGAAATATGTTCTAAGACTTCAAACAGCACAAG
CCTACGATTACAGTAATTTTAAATATCATTTTCTTTCCCGATTCTATTTT
AGCGATCTCAAATTTGAGAACGTCTTAGTTGACCGATATGGAGTTGTAAA
GCTTGCAGGTAAAATTCTTTTAAAACTTCGTTCTTTTCGAAATTTTGGTT
ATCTATCGATCCNCTTGCAGGTAAAAATCTTTAAAAACTTAACTACATTC
TGTTCGAAATTTTGGTTATCTATCGATCCATCGAATGAGCTATTCCATAT
TAAAAACACCTCCGTATGTTAAGAATTTCAAGCTTTCACAGAATTTTTGG
CTTTTCCACGAATGAAAAATATGATCTGAAGGGTTAATTTTTTTCTGGAA
TGGCCAATTACGTCGTTTACACAATTTTCACCACAAGCATTCACATATTC
CGTTTCTATACGTTTTAGATTTCGGATCGGCCGAATTTCCCGATCACTAT
CCCGATGGTCTCCTAGACACATTTATCGGCACACCTTCGTACATGGCCCC
CGAAGTCGTACTCGGCTACCTCGATAAAGGCCAAGCGTATGATGGTTACA
AGGCAGATAGCTGGAGTGTGTAAGTTGTCCAAAGTTCGTCTTTTCATAAG
TACGCTAAGTTTATGCAAGTAAAACACTTATCATAGCACTCATTCTGAAA
AATAAAATGAGATTTTGTCTAGTATACCGACCGACTGCCTAACGATCTGC
CCGTAGAACAACAAATTAAATTTGTCTCGCCTAAAAGAGGATTTCAATAT
TGAAAATCCTGGAATACATATTACAAACTATTTTAAATTACACTATTGAT
ATTACTGGACTTTCATATTCGATTTTGCTAAGCTTGTAGGTTTAGAACGC
CATGATTCTGGGAGAAACTCTCCTTGTTGACCGACAGGGTCCTGCTATCT
TATGGATGTTACTATATTGCATGGTATTATTTTTCTCCTTCCAGTGGAAT
CATCCTGTTCAAATTGTTGACAGGCAAACAACCCTACGCACCGTTGCCAT
GGCAACTACTCTACAATTTGATTCAAAAGAAGACTTTCAAACAACGTCTT
CCAGCGGATGTAAACCTAACCCCAGGTAATTTGCGATTCGATTTTAGTAG
AGGCAGATCAGCTTATAAAATTTAAATATCCTGCCCTGGATTTGCGTCTG
CATTTAACCGATCGGAATCACCTGAAAAGGCCGGTAATTTGACCACTGTT
ATGCTATTTTAGTCAAATTCAAACTTTTTTCGAGTATTGCCGATAGAAAA
AAAGAAGTAATTTTTATGAAAAAACCTAAATTTTCCTCTTCGTCGGTAAA
ATCGCTTACATTTCCTAATTCGCCGTACCAGAATTAAAAAGCTTCCGTCG
TGCCTGCGTATAAACAAGAAAAGACAGCTCAAAGATTTCTTCTCAATAGA
CGATAAGATTGACAAAGACTTTCAATCCAAGAGCAAATAATTTCTGGAAG
TTCCCATTGTCTTTAAAAAATCTTCTTTTTTTTATGACTTTTTTTTTCTC
AATTTTATTCACCGGCTAGTTGGTTGTCTGTACACAGACCCGATAACTAC
GGCTAATTTCAAAATTCATTGTCTTAGAGACGATAAACGTGAGATACACT
CTGGTACAGAGTAGCTAGTTGGGAAGACATATCTAAATAACCATTATATT
CTCTTACCTCTTGAATAGAATGTATCAACCTTCTTGGAAGACTTTTAGAC
AGAGATGCGAAAAGCAGAGCATCACTTCAAGAAATATTGGAACATCCGTG
GTTGAAGTTGGAAGAGGTAAAGAAGGTAATCTATGGGGGCGTACGGGCTT
TGCGATTTCCGAAATACCGAATAATTTAGCCAAAATTTCCGAAATTTCAT
AAAAAAATACTTGCAATTCCGATATACCGATTTGTTGGGTATTTTTCCTC
GTTTTGACTAATTTTCCATCAAATTTGATTTTTCATGTATGAATTCAGAA
AAAGGGTGACAAAAACTTTATAATACCGAAATTTAGAAGCAAAAATTCAT
GGATTTCTGATACCGAAACAATTTAAGAATTCCAAAATACCGAAAGAATT
TTCTCCGATTTCCGACATTCTGAAGAAAAAAGGTTCGATTTCCGCAATTC
CGAAATACCGTACGCCCCCACATCTATAAACTCTGATTTTCTAGTGATAC
CTTGAAAAAATGTTCTCGTTAGTTTTCAAAAGCCGAGATGTTGAGATGTT
CAATTAATTACTACAGTTAGGTATCTTATTTTCCACTTAAGTACGAAAAC
AATTAATGAGCCTTGTAAGGAATCACTGTTTCAATTGCCGTAACTACTAC
CAAAATACTACTTTTTACTCAACACTGTAGAAGAGAATTTTACAGGTGAA
AACTCTCAAAGAATCTGATTATCCCTTTACATTTTTTTTATTAGAACAAA
CATTATAAGAACATAAGACTTCGATGGCCAAAATGTTAAGTACAAGTTAA
GAACATTTTAAGGCTTCGTTGACTCTAAAANGAACAAACATTATAAGAAC
ATAAGACTTCGATGGCCAAAATGTTAAGAACAAGTTAAGAACATTTTAAG
GCTTCGTGGACTCTAAAAAACTAAATTTCTTAGGAGAATGGACAAAAATA
CTAAAAAATAGCGAAAATAAGAACATGATAAGAACGTTTTTAGGCTTAAA
ACTCAGCCTCACTTACAAGGATTTTATTGTTTTGTTTTTCATACCTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015793XLOC_015793Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027934-exon-sc0000657-1575043694:76665..76705TCONS_00027934-exon-sc0000657-1575043694:76665..76705Clytia hemisphaericaexon
TCONS_00027934-exon-sc0000657-1575043694:76346..76435TCONS_00027934-exon-sc0000657-1575043694:76346..76435Clytia hemisphaericaexon
TCONS_00027934-exon-sc0000657-1575043694:75118..75314TCONS_00027934-exon-sc0000657-1575043694:75118..75314Clytia hemisphaericaexon
TCONS_00027934-exon-sc0000657-1575043694:74748..74803TCONS_00027934-exon-sc0000657-1575043694:74748..74803Clytia hemisphaericaexon
TCONS_00027934-exon-sc0000657-1575043694:74287..74437TCONS_00027934-exon-sc0000657-1575043694:74287..74437Clytia hemisphaericaexon
TCONS_00027934-exon-sc0000657-1575043694:73781..73911TCONS_00027934-exon-sc0000657-1575043694:73781..73911Clytia hemisphaericaexon
TCONS_00027934-exon-sc0000657-1575043694:72158..73187TCONS_00027934-exon-sc0000657-1575043694:72158..73187Clytia hemisphaericaexon
TCONS_00027934-exon-sc0000657-1510915933:76665..76705TCONS_00027934-exon-sc0000657-1510915933:76665..76705Clytia hemisphaericaexon
TCONS_00027934-exon-sc0000657-1510915933:76346..76435TCONS_00027934-exon-sc0000657-1510915933:76346..76435Clytia hemisphaericaexon
TCONS_00027934-exon-sc0000657-1510915933:75118..75314TCONS_00027934-exon-sc0000657-1510915933:75118..75314Clytia hemisphaericaexon
TCONS_00027934-exon-sc0000657-1510915933:74748..74803TCONS_00027934-exon-sc0000657-1510915933:74748..74803Clytia hemisphaericaexon
TCONS_00027934-exon-sc0000657-1510915933:74287..74437TCONS_00027934-exon-sc0000657-1510915933:74287..74437Clytia hemisphaericaexon
TCONS_00027934-exon-sc0000657-1510915933:73781..73911TCONS_00027934-exon-sc0000657-1510915933:73781..73911Clytia hemisphaericaexon
TCONS_00027934-exon-sc0000657-1510915933:72158..73187TCONS_00027934-exon-sc0000657-1510915933:72158..73187Clytia hemisphaericaexon
TCONS_00027934-exon-sc0000657-1491911889:76665..76705TCONS_00027934-exon-sc0000657-1491911889:76665..76705Clytia hemisphaericaexon
TCONS_00027934-exon-sc0000657-1491911889:76346..76435TCONS_00027934-exon-sc0000657-1491911889:76346..76435Clytia hemisphaericaexon
TCONS_00027934-exon-sc0000657-1491911889:75118..75314TCONS_00027934-exon-sc0000657-1491911889:75118..75314Clytia hemisphaericaexon
TCONS_00027934-exon-sc0000657-1491911889:74748..74803TCONS_00027934-exon-sc0000657-1491911889:74748..74803Clytia hemisphaericaexon
TCONS_00027934-exon-sc0000657-1491911889:74287..74437TCONS_00027934-exon-sc0000657-1491911889:74287..74437Clytia hemisphaericaexon
TCONS_00027934-exon-sc0000657-1491911889:73781..73911TCONS_00027934-exon-sc0000657-1491911889:73781..73911Clytia hemisphaericaexon
TCONS_00027934-exon-sc0000657-1491911889:72158..73187TCONS_00027934-exon-sc0000657-1491911889:72158..73187Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000657supercontigsc0000657:72158..76705 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0553383	0.0333746	0.378186	0.30404	0.134324	0.225309	0.139246	0.343149	0.183723	0.211628	0.510375	0.0818225	0.207205	0.166894	0.0818623	0.191549	0.154233	0.0843895	0.103344	0.245834	0.139881	0.139902	0.109776	0.0925175	0.266092	0.355756	0.10764	0.109558	0.138881	0.254338
Blast
[Close]
BLAST of TCONS_00027934 vs. Swiss-Prot (Human)
Match: SNRK (SNF-related serine/threonine-protein kinase OS=Homo sapiens GN=SNRK PE=1 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 2.354e-33
Identity = 89/246 (36.18%), Postives = 131/246 (53.25%), Query Frame = 3 
Query:   39 KVAIKIMPKRN-----EAEISNEFKAMRRAKGSANIVEIYGKFNGIENTYLIMEFCHGGDLTNHLETVYKDSPYLSESKAKEYFRSIATGVKYCHDHGIAHRDLKFENVL-VDRYGVVKLADFGSAEFPDHY-PDGLLDTFIGTPSYMAPEVVLGYLDKGQAYDGYKADSWSVGIILFKLLTGKQPYAPLPWQLLYNLIQKKTFKQRLPADVNLTPECINLLGRLLDRDAKSRASLQEILEHPWLK 755
            KVA+K++ K          +  E + M+  +   NIV +Y   +     YLI+E   GGD+ ++   + K    L+E  AK+YF  I   + YCH   + HRDLK ENV+  ++ G+VKL DFG   F + + P   L T  G+ +Y APE++L     G  YD    D WS+G+ILF L+ G+ P+          +I     K  +P+ V  + EC +L+ R+L RD K RASL+EI  HPWL+
Sbjct:   41 KVAVKVIDKTKLDTLATGHLFQEVRCMKLVQ-HPNIVRLYEVIDTQTKLYLILELGDGGDMFDY---IMKHEEGLNEDLAKKYFAQIVHAISYCHKLHVVHRDLKPENVVFFEKQGLVKLTDFG---FSNKFQPGKKLTTSCGSLAYSAPEILL-----GDEYDAPAVDIWSLGVILFMLVCGQPPFQEANDSETLTMIMD--CKYTVPSHV--SKECKDLITRMLQRDPKRRASLEEIENHPWLQ 270
The following BLAST results are available for this feature:
BLAST of TCONS_00027934 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SNRK2.354e-3336.18SNF-related serine/threonine-protein kinase OS=Hom... [more]
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