TCONS_00027932 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00027932
Unique Name	TCONS_00027932
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1309

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000657:71139..77029-

transcript sequence

>TCONS_00027932 ID=TCONS_00027932|Name=TCONS_00027932|organism=Clytia hemisphaerica|type=transcript|length=1309bp
TCTGGCTAAGTCAGAGGAATCGTATTTGGCCTGTAAAAAGTTATTGCAAC
AGTTACAGTCATCGAAGTTATTGTATTATTTAGCAAAGTTATAATATTGT
TGAATTATAAAGACAATGAACACTCAAGAATTAGAGTGTTTATACAAAGG
TTTCTCCTTGGGGCGCAGCTTAGGCGAGGGTGCTAACGGCAAAGTGAGAC
TGGCAACATATGCCAAGTTGAACGTTCCGGGCGACTCCCTCGCATCAAAG
TTGCGCGTCAAGGGTACCAACAAAGTGGCTATTAAGATAATGCCCAAACG
AAACGAAGCCGAGATTTCAAACGAATTCAAGGCAATGAGAAGAGCTAAAG
GCTCTGCAAATATTGTCGAAATTTACGGCAAATTCAATGGTATCGAAAAT
ACCTATCTTATCATGGAATTCTGTCATGGTGGCGATTTGACCAATCATTT
GGAAACCGTTTACAAAGATTCTCCATATCTTAGTGAATCCAAAGCTAAAG
AATACTTCAGGAGTATTGCAACAGGAGTCAAATATTGCCATGATCATGGC
ATCGCTCATCGCGATCTCAAATTTGAGAACGTCTTAGTTGACCGATATGG
AGTTGTAAAGCTTGCAgATTTCGGATCGGCCGAATTTCCCGATCACTATC
CCGATGGTCTCCTAGACACATTTATCGGCACACCTTCGTACATGGCCCCC
GAAGTCGTACTCGGCTACCTCGATAAAGGCCAAGCGTATGATGGTTACAA
GGCAGATAGCTGGAGTGTTGGAATCATCCTGTTCAAATTGTTGACAGGCA
AACAACCCTACGCACCGTTGCCATGGCAACTACTCTACAATTTGATTCAA
AAGAAGACTTTCAAACAACGTCTTCCAGCGGATGTAAACCTAACCCCAGA
ATGTATCAACCTTCTTGGAAGACTTTTAGACAGAGATGCGAAAAGCAGAG
CATCACTTCAAGAAATATTGGAACATCCGTGGTTGAAGTTGGAAGAGgtc
gatgagaaaaagaaaaatgttccagTAAAGTTGATGGATGAAAAAAGGCC
CTTGCAGGTCCAAAAGCAATCGCAAGACGTTCGGGCAAAAAACGGAAATA
ACGCATTAAATACTCTAATTGTCGTCAAAGGAAAAATCGTCCACAGAGAT
GAGAGAAAACCATTCAGACGAGCATTCTATCCTAATGGCCATCATTTCAC
TCCACAAGAATGGTGGGAATGACTCATCATAACCACACCGTCAACAGCAA
CAATAAAACCCACAATGCAACAAAATCCACATAACTCCAAATCAATCTAT
CAATCCCtc

Run BLAST on NCBI

transcript from alignment at sc0000657:71139..77029-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00027932 ID=TCONS_00027932|Name=TCONS_00027932|organism=Clytia hemisphaerica|type=transcript|length=5891bp|location=Sequence derived from alignment at sc0000657:71139..77029- (Clytia hemisphaerica)
TCTGGCTAAGTCAGAGGAATCGTATTTGGCCTGTAAAAAGTTATTGCAAC
AGTTACAGTCATCGAAGTTATTGTATTATTTAGCAAAGTTATAATATTGT
TGAATTATAAAGACAATGAACACTCAAGAATTAGAGTGTTTATACAAAGG
TTTCTCCTTGGGGCGCAGCTTAGGCGAGGGTGCTAACGGCAAAGTGAGAC
TGGCAACATATGCCAAGTTGAACGTTCCGGGCGACTCCCTCGCATCAAAG
TTGCGCGTCAAGGGTACCAACAAAGTAAGTTTGAATCTTATCGTGCAGCT
TTTCTAACAAATGGTTTTGCGTTGCNGCCCTCGCTGCAAAGTTGCGCGTC
AAGGGTACCAACAAAGTAAGTTTAAATCTTTTCATACAGTTTTTCTAATA
AATGATTTTGCGTTACTTGCAGAATTAAATTCTTACCAAGTAAGAATTTT
TTAAGATTTTTACTCCTCTTAAAAATATTTTTATTGACTATTTATTATTT
TACAGATTATTTATTTGTGCTGTAATTAGAAAAAAACATCATTAGCGTGA
GGATCTTTAGTTTCTATGGATAACTTACTTCGTCTTTTTTTAAGGTGGCT
ATTAAGATAATGCCCAAACGAAACGAAGCCGAGATTTCAAACGAATTCAA
GGCAATGAGAAGAGCTAAAGGCTCTGCAAATATTGTAAGTATAGCCTTTA
TATTACATATTATCATTTTTTTATGTTTTGAAGGTTAAGCTTCAGTACGT
TTATCATAATGTTTCTGTAGTGGAAACCACAATCATACACTAAATATTTG
AGATAAAGGGGAGTTCCCGGTGTAATTTTGAACACCACGATTGATTTTTA
AGCGCATTAGTTTTAACTCTGAGTTTTAACATGAGACTTAAGACTTACGA
CCTTAGGATCTCAGGATTTAAAAGCTCAAATTTGCTCGAATGAGGCTTGG
AATATAGCCTAGAAGCCACCAAACCCCTCTAAAATCGAAATATTCAATGG
AAGAAAGTGGAAGTGCTAAAATAGCAATTCTCGCCCGAACTTTAATTTCT
GAAAAACGTTAAAATACACTAAAATCTCAATATATTTCGAGGGTGATTGC
AGGTTGGGGTTTACTTATGCAACGGATATACACGTTTTTTTATAAGAACA
AACTATATAAGAACGGCTTCGATGGCCAAATTATTAAGAAAAAGTTAAAA
ACATTTTAAGGCTTCGTGGGCTCGCTCTAAAAAGCTTGATTTCTTAGGAA
ATTGCACAAAAATACTCACAAAATGGTGAAGCTAAGAACATCCTGAGAAC
ATTTTTAGGCTCAAAACTCAAAAAGTTAGGAGAATCCTTAGGCTTCAAAA
ATTTTGGATATTCTTATAAAAAAACGTGTACCTTTTTCACCACCATGAGT
TCAAAATAACCAAAATAAAAATAGCTCTCTTTTTTGGAAATTTGGGAAGA
TGGCAATTTCTTTGAGATTAGTTATATAATGAAATTAATCCCCATTCGCA
AATTTATGTGCCGAGTAGAGTCCATTTTTCGAAGCTCAGCAGGACCCTGT
CGATCAGCAAGGAGAGTAACTCCCATCATCATGGCGTTCTTATTTTACAA
GCCTAGTGAAATTTAAGCTACTGCACACGTGCTAGGCCTGGATAAATAAA
TAGGTTACCCTGGAAGCTGAGTCGAGCCTTTTTCATTAATGATAAATCTA
TACTTTTATACATAGGTCGAAATTTACGGCAAATTCAATGGTATCGAAAA
TACCTATCTTATCATGGAATTCTGTCATGGTGGCGATTTGACCAATCATT
TGGAAACCGTTTACAAAGATTCTCCATATCTTAGTGAATCCAAAGCTAAA
GAATACTTCAGGAGTATTGCAACAGGAGTCAAATATTGCCATGATCATGG
CATCGCTCATCGGTGAGTTACTTTATAGTTAGCAGAGTTCATCAAATAAC
TTCCGTCAGTACAAAAATTCAGCTGTACTCGCTCAAAAGTATTTTGTATT
TTTTACGTAGTATAAGTGATTTAAACATAAAACGAATTCGCGCAGTAGTT
ACACCAATCGGTCCTATTAAAATACTTTATCCAATGGTATTTTGACTTAC
CTTGTCTATCCAGACAATTGTGAGTTATAGGTATAGTTATATGAAATATG
TTCTAAGACTTCAAACAGCACAAGCCTACGATTACAGTAATTTTAAATAT
CATTTTCTTTCCCGATTCTATTTTAGCGATCTCAAATTTGAGAACGTCTT
AGTTGACCGATATGGAGTTGTAAAGCTTGCAGGTAAAATTCTTTTAAAAC
TTCGTTCTTTTCGAAATTTTGGTTATCTATCGATCCNCTTGCAGGTAAAA
ATCTTTAAAAACTTAACTACATTCTGTTCGAAATTTTGGTTATCTATCGA
TCCATCGAATGAGCTATTCCATATTAAAAACACCTCCGTATGTTAAGAAT
TTCAAGCTTTCACAGAATTTTTGGCTTTTCCACGAATGAAAAATATGATC
TGAAGGGTTAATTTTTTTCTGGAATGGCCAATTACGTCGTTTACACAATT
TTCACCACAAGCATTCACATATTCCGTTTCTATACGTTTTAGATTTCGGA
TCGGCCGAATTTCCCGATCACTATCCCGATGGTCTCCTAGACACATTTAT
CGGCACACCTTCGTACATGGCCCCCGAAGTCGTACTCGGCTACCTCGATA
AAGGCCAAGCGTATGATGGTTACAAGGCAGATAGCTGGAGTGTGTAAGTT
GTCCAAAGTTCGTCTTTTCATAAGTACGCTAAGTTTATGCAAGTAAAACA
CTTATCATAGCACTCATTCTGAAAAATAAAATGAGATTTTGTCTAGTATA
CCGACCGACTGCCTAACGATCTGCCCGTAGAACAACAAATTAAATTTGTC
TCGCCTAAAAGAGGATTTCAATATTGAAAATCCTGGAATACATATTACAA
ACTATTTTAAATTACACTATTGATATTACTGGACTTTCATATTCGATTTT
GCTAAGCTTGTAGGTTTAGAACGCCATGATTCTGGGAGAAACTCTCCTTG
TTGACCGACAGGGTCCTGCTATCTTATGGATGTTACTATATTGCATGGTA
TTATTTTTCTCCTTCCAGTGGAATCATCCTGTTCAAATTGTTGACAGGCA
AACAACCCTACGCACCGTTGCCATGGCAACTACTCTACAATTTGATTCAA
AAGAAGACTTTCAAACAACGTCTTCCAGCGGATGTAAACCTAACCCCAGG
TAATTTGCGATTCGATTTTAGTAGAGGCAGATCAGCTTATAAAATTTAAA
TATCCTGCCCTGGATTTGCGTCTGCATTTAACCGATCGGAATCACCTGAA
AAGGCCGGTAATTTGACCACTGTTATGCTATTTTAGTCAAATTCAAACTT
TTTTCGAGTATTGCCGATAGAAAAAAAGAAGTAATTTTTATGAAAAAACC
TAAATTTTCCTCTTCGTCGGTAAAATCGCTTACATTTCCTAATTCGCCGT
ACCAGAATTAAAAAGCTTCCGTCGTGCCTGCGTATAAACAAGAAAAGACA
GCTCAAAGATTTCTTCTCAATAGACGATAAGATTGACAAAGACTTTCAAT
CCAAGAGCAAATAATTTCTGGAAGTTCCCATTGTCTTTAAAAAATCTTCT
TTTTTTTATGACTTTTTTTTTCTCAATTTTATTCACCGGCTAGTTGGTTG
TCTGTACACAGACCCGATAACTACGGCTAATTTCAAAATTCATTGTCTTA
GAGACGATAAACGTGAGATACACTCTGGTACAGAGTAGCTAGTTGGGAAG
ACATATCTAAATAACCATTATATTCTCTTACCTCTTGAATAGAATGTATC
AACCTTCTTGGAAGACTTTTAGACAGAGATGCGAAAAGCAGAGCATCACT
TCAAGAAATATTGGAACATCCGTGGTTGAAGTTGGAAGAGGTAAAGAAGG
TAATCTATGGGGGCGTACGGGCTTTGCGATTTCCGAAATACCGAATAATT
TAGCCAAAATTTCCGAAATTTCATAAAAAAATACTTGCAATTCCGATATA
CCGATTTGTTGGGTATTTTTCCTCGTTTTGACTAATTTTCCATCAAATTT
GATTTTTCATGTATGAATTCAGAAAAAGGGTGACAAAAACTTTATAATAC
CGAAATTTAGAAGCAAAAATTCATGGATTTCTGATACCGAAACAATTTAA
GAATTCCAAAATACCGAAAGAATTTTCTCCGATTTCCGACATTCTGAAGA
AAAAAGGTTCGATTTCCGCAATTCCGAAATACCGTACGCCCCCACATCTA
TAAACTCTGATTTTCTAGTGATACCTTGAAAAAATGTTCTCGTTAGTTTT
CAAAAGCCGAGATGTTGAGATGTTCAATTAATTACTACAGTTAGGTATCT
TATTTTCCACTTAAGTACGAAAACAATTAATGAGCCTTGTAAGGAATCAC
TGTTTCAATTGCCGTAACTACTACCAAAATACTACTTTTTACTCAACACT
GTAGAAGAGAATTTTACAGGTGAAAACTCTCAAAGAATCTGATTATCCCT
TTACATTTTTTTTATTAGAACAAACATTATAAGAACATAAGACTTCGATG
GCCAAAATGTTAAGTACAAGTTAAGAACATTTTAAGGCTTCGTTGACTCT
AAAANGAACAAACATTATAAGAACATAAGACTTCGATGGCCAAAATGTTA
AGAACAAGTTAAGAACATTTTAAGGCTTCGTGGACTCTAAAAAACTAAAT
TTCTTAGGAGAATGGACAAAAATACTAAAAAATAGCGAAAATAAGAACAT
GATAAGAACGTTTTTAGGCTTAAAACTCAGCCTCACTTACAAGGATTTTA
TTGTTTTGTTTTTCATACCTCACAATTTTTACACAACTTCAAATTAGAAA
AAACTTCATTTTTTAGGTCGATGAGAAAAAGAAAAATGTTCCAGTAAAGT
TGATGGATGAAAAAAGGCCCTTGCAGGTAAGTAAAGTTAACTTTTATTCA
TTTTTTACACATTTTTTTTTACACATTTTACCCCAATTTTCGACTCAAGG
CTGGACTTGCCAAGGATTTATATTCGCCACAAAAAAACCTCGCCTCACTT
TGCCTATTATTATTTGTTAAAGTGCTTGAATTTACTTTTACATTTCAGGT
CCAAAAGCAATCGCAAGACGTTCGGGCAAAAAACGGAAATAACGCATTAA
ATACTCTAATTGTCGTCAAAGGAAAAATGTAAGAAGGAACATATTTATTT
GGACTCCGATTCTGCACTAGATATTTTTTTCCCAGGAAAATCACGTGATA
TACTTTTAACCAATAAAATTTGATAATTTCGAGAGGAAAGTGAACACTAA
AACACTTTCAAAACCAATGAGATATATAGGGCTAAAAAGGAATTCTCGAC
CACTCCTAGGCAAGGGGAAGTCAATAATATTTGCGCTGAAGTTCGGATAA
CAGATTGATTCTAAGTTTTTCTTTGTTTTTCTTGCGTGGCATGTTTTTAA
AAATTTGTTGGTAATGTTACTTTTTATCTACAGTGGAATTCGTGTGAAAA
CCACGCGGGCCAAGAAAACTTATGTTTGAAGCCTACATAGGATATTCGGT
TCCAGCTCTCGGCTATATTAATACAGGTGGTTCTGAAATAGCATGAAAGC
AATTTAAGGATTATTGACATACTAGATGAGGCAATTAAATGAAACTCGTT
CTTTTCATTCTCATTTTAGCGTCCACAGAGATGAGAGAAAACCATTCAGA
CGAGCATTCTATCCTAATGGCCATCATTTCACTCCACAAGAATGGTGGGA
ATGACTCATCATAACCACACCGTCAACAGCAACAATAAAACCCACAATGC
AACAAAATCCACATAACTCCAAATCAATCTATCAATCCCTC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_015793	XLOC_015793	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000657	supercontig	sc0000657:71139..77029 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.050368	0.128653	0	0.368028	0.290821	0	0.0431564	0.116342	0.118046	0.225625	0	0	0	0	0	0.0820557	0.104992	0	0	0	0	0	0	0.101613	0	0	0	0.0357977	0

Blast

[Close]

BLAST of TCONS_00027932 vs. Swiss-Prot (Human)
Match: TSSK3 (Testis-specific serine/threonine-protein kinase 3 OS=Homo sapiens GN=TSSK3 PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.472e-37
Identity = 95/291 (32.65%), Postives = 150/291 (51.55%), Query Frame = 2

Query:  140 LYKGFSLGRSLGEGANGKVRLATYAKLNVPGDSLASKLRVKGTNKVAIKIMPKRNEAE------ISNEFKAMRRAKGSANIVEIYGKFNGIEN-TYLIMEFCHGGDLTNHLETVYKDSPYLSESKAKEYFRSIATGVKYCHDHGIAHRDLKFENVLVDRYGVVKLADFGSAEFPDHYPDGLLDTFIGTPSYMAPEVVLGYLDKGQAYDGYKADSWSVGIILFKLLTGKQPY--APLPWQLLYNLIQKKTFKQRLPADVNLTPECINLLGRLLDRDAKSRASLQEILEHPWL 985
            L  G+ LG+++GEG   KV+ A ++K              K   KVAIK++ K    E      +  E + +R      NI+++Y      +    L+ME   GGD+    + V    P L ES+AK  FR +   ++YCH  G+AHRDLK EN L+  +  +KL DFG A+        L  TF G+ +Y APEV+     +G  +D  K D WS+G++L+ +L    P+    +P ++L+   +  +F    P  ++++ +C +LL RLL+ D   R S++E+  HPWL
Sbjct:    6 LSNGYQLGKTIGEGTYSKVKEA-FSK--------------KHQRKVAIKVIDKMGGPEEFIQRFLPRELQIVRTLD-HKNIIQVYEMLESADGKICLVMELAEGGDV---FDCVLNGGP-LPESRAKALFRQMVEAIRYCHGCGVAHRDLKCENALLQGFN-LKLTDFGFAKVLPKSHRELSQTFCGSTAYAAPEVL-----QGIPHDSKKGDVWSMGVVLYVMLCASLPFDDTDIP-KMLWQQQKGVSF----PTHLSISADCQDLLKRLLEPDMILRPSIEEVSWHPWL 265

The following BLAST results are available for this feature:

BLAST of TCONS_00027932 vs. Swiss-Prot (Human)

BLAST of TCONS_00027932 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TSSK3	3.472e-37	32.65	Testis-specific serine/threonine-protein kinase 3 ...	[more]

You are here

TCONS_00027932 (transcript) - C. hemisphaerica