TCONS_00027928 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027928
Unique NameTCONS_00027928
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length628

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027928 ID=TCONS_00027928|Name=TCONS_00027928|organism=Clytia hemisphaerica|type=transcript|length=628bp
AAAGGATTGATATAAACcaaattataaagttttgagtttcagatcaaaac
aaatttgctaCAATGAGGTACTTGGTTGTTGTGTTATGCATGCTTGCCGT
CGCTTGTGCGTATGCCGATAAGTGTCAGCACGAGCATGAAATATGCATGA
AGAAAGCAAAATATATGAAAGACAAACTTGCTTGTATTCGTCAAAGAGTC
AAATGCATTGCGGGAAAATTGGGAGAGAAAGTCAAACCAGGGCAAAGCTG
TATGCAGAAGTGCAATCAAGATAACAAGAATTTGATGGATCGAGTAAAGT
GCTACCGAACATGCGTTTCTGTTGGTGATGAAATGCAGATGGCTGAACAA
TTGTTCGATGATGCTGACTTAACATGtcgtgaaaaagaaaagaaatgcaT
GGGTGCTGCAAAAGACTACAAAGAGAAATTCGAATGTTTGAAAGGAACTC
TCAAATGCCGGATGGAAAAAGTCCAAGATAGAGTCAAGTGTATGAATAAG
tgccGCCAAAAGGATAACAGACAAGGCATGGACTGCTTCCGCAGTTGTAT
TTAAACAAGAGACAAAACAATTTGATATACAAGATTCTAAAACCAAATAT
ATATTACAATGAAATTGCAATGCATAAA
Run BLAST on NCBI

protein sequence of TCONS_00027928-protein

>TCONS_00027928-protein ID=TCONS_00027928-protein|Name=TCONS_00027928-protein|organism=Clytia hemisphaerica|type=polypeptide|length=163bp
MRYLVVVLCMLAVACAYADKCQHEHEICMKKAKYMKDKLACIRQRVKCIA
GKLGEKVKPGQSCMQKCNQDNKNLMDRVKCYRTCVSVGDEMQMAEQLFDD
ADLTCREKEKKCMGAAKDYKEKFECLKGTLKCRMEKVQDRVKCMNKCRQK
DNRQGMDCFRSCI
Run BLAST on NCBI

transcript from alignment at sc0000657:50418..53145-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027928 ID=TCONS_00027928|Name=TCONS_00027928|organism=Clytia hemisphaerica|type=transcript|length=2728bp|location=Sequence derived from alignment at sc0000657:50418..53145- (Clytia hemisphaerica)
AAAGGATTGATATAAACCAAATTATAAAGTTTTGAGTTTCAGATCAAAAC
AAATTTGCTACAATGAGGTACTTGGTTGTTGTGTTATGCATGCTTGCCGT
CGCTTGTGCGTATGCCGATAAGGTGGGTAGGGTTAAGGAATTTAGTACCG
TAGTTTTACACATTTTTTATTTGAACAAACTAAAAAACTTAAGGCTTTGA
TTGTCAAAGTATTAAGAACAAGGTCAGAATATTTTAAAGCTTTTTGGACT
TTAAAACACGGGATTTCTTAGGGAAATGCATAAATATGCTCGAAAAAATG
GTATAAAGACTGGTTAAGAACATTTTTAGCCTTAAAACGCTAAAATTTAA
GAACCTCTGAAGGCTTTAAACATTTTATTTGTTCTCATAATAGAAGGTGT
AGCGTGACAACAAGAAGCGTTGGAATCGCAACTAAAGAACATTGAATAAT
TTGAAGAACCAAAAATTGATAGTTTTTATGAAAAGAACTTGTATTCTCTC
ACATTTTTTTTGTTCATTATAGTGTCAGCACGAGCATGAAATATGCATGA
AGAAAGCAAAATATATGAAAGACAAACTTGCTTGTATTCGTCAAAGAGTC
AAATGCATTGCGGGAAAATTGGGAGAGAAAGTCAAACCAGGGCAAAGCTG
TATGCAGAAGGTAAATTCATGGGAAAGTTTGAAATCGCCTACTGTTTGTC
ATCTAAAACGATATTTAAACTGAATTGCTATGATATGATGGACCTTTAAA
AACGACCGTATGTGACAGCCCAATTATATTAGGCCTTTAAAATTGGACCA
TTATACAGTATGCAGAGATAGTTTAGCCGAATTTGGGCGAAAATTGATCT
TTACATTACAGTGCATTTTTTGTGAAAACTTTTACCCATTTTAAGGCAAA
ATATGTTGCTTAAAAAACTTAATTTCACTTTTTACACCCTTAGAGTGCAC
TCTCTGAAATTGTGATCTTTAAAGTACACTTTAGGAATCCTAAAGAAGCA
ACTTTAAAAGCCAATTTTTGAATCCGACCCCCCTCCCTCCCGGAGGATGG
GGTCAATTTTCCCGTCGATGATTTTCCCATGAACCAGTGGCGTTCCCATC
CGACAAAGAGTGTCAAACTTGTATTTTCAGTATATTTCGGTAAAAATTCT
CACTAAAATTAGTACCTCTGCTATTTTATTTATGTACATTCAAATGGTCA
TTCTTCATATAAATTTTTTATTTCAAACAATATTTGGACCTCTTTAGTGG
AGATTTTCATCAGGTTTACAAACGTTCAGTTGAGATCATTCTTTTGACGT
CAACTCCACTACTTGTTTATTGGTAAACATTACACCACTGTCTCACTACC
TCTGTTTCAGTGCAATCAAGATAACAAGAATTTGATGGATCGAGTAAAGT
GCTACCGAACATGCGTTTCTGTTGGTGATGAAATGCAGATGGCTGAACAA
TTGTTCGATGATGCTGACTTAACAGTAAGGCATCGTTATGTTGTGAAAGG
TTATTTGTCATGAAGGAGTGGTGTATACACACCCTTTTTCACAGACCCAG
TACGATTTTGGGATAGAAATAAAGGACTCAAACTCGAATAGGTGTTGATA
TTACCATGTTTTTATTGACTGGGTATTTAAATTCAGAAAATTCAATAGGG
ATGGCAAAATGCACAATATTTGGAGTGAAATTTGTTTATTTGGTAATTTT
CATCGGGGACAAAAATCGTATAATTATCCACTGGGGACCATTTTTAGACA
TATTTCTCGAATGAAAGGGGTCCCACTGGGTCTGTGAGAAGGGGTTATAC
TAATCTCTGTTTTTCATTCGTTACTTTAGTGTCGTGAAAAAGAAAAGAAA
TGCATGGGTGCTGCAAAAGACTACAAAGAGAAATTCGAATGTTTGAAAGG
AACTCTCAAATGCCGGATGGAAAAAGTCCAAGATAGAGTCAAGTGTATGA
ATAAGGTAAACTAAATTGTTTTTAACGATTACAGGCCGTTTCACAGTCGA
AAGGAATCAATTGGACCACCGCGCTCTGATAACTGATTTCTGTTATGTTT
TTGCGTCTATCCATCCAACGGGAAGCCATTATGAAGAAGCCTATGCTCTC
AAGGACAACTGTATTAGACAGTGAGTGAATATCTTTTAAAGGATATATCG
TAAACAACAGTCGCCTTAGTACCCCGGGGGGGGCTCTTAGGCAAAAATGG
ATGATGGGTATGTGCAGACGGTAAGGGTCGGTTTTTTCACCTTTCACAGT
CTCTCTAAGGGTCGGAAAATTCAGGATTTTTAGGAAATTTTTTGATTTCC
AGAGAAAAAATTGTAATAAAGTTTCTCTAAGGGTCACCTTTTCAGCAAAA
ATCAGTCTCTAAGGGTTGGGTTTCGGAGGTCCCGTCCGCACATACCCCTC
ATTCGCCAACCCTAGTACCCCCCCCCCATCCCTGGGCTTAGTACAGATCT
TTGTACACTCAACTGAGTCACAAGTTCTCGACTTTTTAGAAGAAAATAGT
TTGATAAAAATACTTATAGATTAAAAGGTTTGTGCAGGCCAAATATATCA
TACCATCTTTAATTCAATGTTAACATAATAACTCCCATATTTTTTTTCAG
TGCCGCCAAAAGGATAACAGACAAGGCATGGACTGCTTCCGCAGTTGTAT
TTAAACAAGAGACAAAACAATTTGATATACAAGATTCTAAAACCAAATAT
ATATTACAATGAAATTGCAATGCATAAA

Coding sequence (CDS) from alignment at sc0000657:50418..53145-

>TCONS_00027928 ID=TCONS_00027928|Name=TCONS_00027928|organism=Clytia hemisphaerica|type=CDS|length=2460bp|location=Sequence derived from alignment at sc0000657:50418..53145- (Clytia hemisphaerica)
TGCCGCCAAAAGGATAACAGACAAGGCATGGACTGCTTCCGCAGTTGTAT
TTAATGTCGTGAAAAAGAAAAGAAATGCATGGGTGCTGCAAAAGACTACA
AAGAGAAATTCGAATGTTTGAAAGGAACTCTCAAATGCCGGATGGAAAAA
GTCCAAGATAGAGTCAAGTGTATGAATAAGTGCAATCAAGATAACAAGAA
TTTGATGGATCGAGTAAAGTGCTACCGAACATGCGTTTCTGTTGGTGATG
AAATGCAGATGGCTGAACAATTGTTCGATGATGCTGACTTAACATGTCAG
CACGAGCATGAAATATGCATGAAGAAAGCAAAATATATGAAAGACAAACT
TGCTTGTATTCGTCAAAGAGTCAAATGCATTGCGGGAAAATTGGGAGAGA
AAGTCAAACCAGGGCAAAGCTGTATGCAGAAGATGAGGTACTTGGTTGTT
GTGTTATGCATGCTTGCCGTCGCTTGTGCGTATGCCGATAAGTGCCGCCA
AAAGGATAACAGACAAGGCATGGACTGCTTCCGCAGTTGTATTTAATGTC
GTGAAAAAGAAAAGAAATGCATGGGTGCTGCAAAAGACTACAAAGAGAAA
TTCGAATGTTTGAAAGGAACTCTCAAATGCCGGATGGAAAAAGTCCAAGA
TAGAGTCAAGTGTATGAATAAGTGCAATCAAGATAACAAGAATTTGATGG
ATCGAGTAAAGTGCTACCGAACATGCGTTTCTGTTGGTGATGAAATGCAG
ATGGCTGAACAATTGTTCGATGATGCTGACTTAACATGTCAGCACGAGCA
TGAAATATGCATGAAGAAAGCAAAATATATGAAAGACAAACTTGCTTGTA
TTCGTCAAAGAGTCAAATGCATTGCGGGAAAATTGGGAGAGAAAGTCAAA
CCAGGGCAAAGCTGTATGCAGAAGATGAGGTACTTGGTTGTTGTGTTATG
CATGCTTGCCGTCGCTTGTGCGTATGCCGATAAGTGCCGCCAAAAGGATA
ACAGACAAGGCATGGACTGCTTCCGCAGTTGTATTTAATGTCGTGAAAAA
GAAAAGAAATGCATGGGTGCTGCAAAAGACTACAAAGAGAAATTCGAATG
TTTGAAAGGAACTCTCAAATGCCGGATGGAAAAAGTCCAAGATAGAGTCA
AGTGTATGAATAAGTGCAATCAAGATAACAAGAATTTGATGGATCGAGTA
AAGTGCTACCGAACATGCGTTTCTGTTGGTGATGAAATGCAGATGGCTGA
ACAATTGTTCGATGATGCTGACTTAACATGTCAGCACGAGCATGAAATAT
GCATGAAGAAAGCAAAATATATGAAAGACAAACTTGCTTGTATTCGTCAA
AGAGTCAAATGCATTGCGGGAAAATTGGGAGAGAAAGTCAAACCAGGGCA
AAGCTGTATGCAGAAGATGAGGTACTTGGTTGTTGTGTTATGCATGCTTG
CCGTCGCTTGTGCGTATGCCGATAAGTGCCGCCAAAAGGATAACAGACAA
GGCATGGACTGCTTCCGCAGTTGTATTTAATGTCGTGAAAAAGAAAAGAA
ATGCATGGGTGCTGCAAAAGACTACAAAGAGAAATTCGAATGTTTGAAAG
GAACTCTCAAATGCCGGATGGAAAAAGTCCAAGATAGAGTCAAGTGTATG
AATAAGTGCAATCAAGATAACAAGAATTTGATGGATCGAGTAAAGTGCTA
CCGAACATGCGTTTCTGTTGGTGATGAAATGCAGATGGCTGAACAATTGT
TCGATGATGCTGACTTAACATGTCAGCACGAGCATGAAATATGCATGAAG
AAAGCAAAATATATGAAAGACAAACTTGCTTGTATTCGTCAAAGAGTCAA
ATGCATTGCGGGAAAATTGGGAGAGAAAGTCAAACCAGGGCAAAGCTGTA
TGCAGAAGATGAGGTACTTGGTTGTTGTGTTATGCATGCTTGCCGTCGCT
TGTGCGTATGCCGATAAGTGCCGCCAAAAGGATAACAGACAAGGCATGGA
CTGCTTCCGCAGTTGTATTTAATGTCGTGAAAAAGAAAAGAAATGCATGG
GTGCTGCAAAAGACTACAAAGAGAAATTCGAATGTTTGAAAGGAACTCTC
AAATGCCGGATGGAAAAAGTCCAAGATAGAGTCAAGTGTATGAATAAGTG
CAATCAAGATAACAAGAATTTGATGGATCGAGTAAAGTGCTACCGAACAT
GCGTTTCTGTTGGTGATGAAATGCAGATGGCTGAACAATTGTTCGATGAT
GCTGACTTAACATGTCAGCACGAGCATGAAATATGCATGAAGAAAGCAAA
ATATATGAAAGACAAACTTGCTTGTATTCGTCAAAGAGTCAAATGCATTG
CGGGAAAATTGGGAGAGAAAGTCAAACCAGGGCAAAGCTGTATGCAGAAG
ATGAGGTACTTGGTTGTTGTGTTATGCATGCTTGCCGTCGCTTGTGCGTA
TGCCGATAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015791XLOC_015791Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027928-exon-sc0000657-1575043694:53024..53145TCONS_00027928-exon-sc0000657-1575043694:53024..53145Clytia hemisphaericaexon
TCONS_00027928-exon-sc0000657-1575043694:52486..52623TCONS_00027928-exon-sc0000657-1575043694:52486..52623Clytia hemisphaericaexon
TCONS_00027928-exon-sc0000657-1575043694:51672..51785TCONS_00027928-exon-sc0000657-1575043694:51672..51785Clytia hemisphaericaexon
TCONS_00027928-exon-sc0000657-1575043694:51191..51316TCONS_00027928-exon-sc0000657-1575043694:51191..51316Clytia hemisphaericaexon
TCONS_00027928-exon-sc0000657-1575043694:50418..50545TCONS_00027928-exon-sc0000657-1575043694:50418..50545Clytia hemisphaericaexon
TCONS_00027928-exon-sc0000657-1510915933:53024..53145TCONS_00027928-exon-sc0000657-1510915933:53024..53145Clytia hemisphaericaexon
TCONS_00027928-exon-sc0000657-1510915933:52486..52623TCONS_00027928-exon-sc0000657-1510915933:52486..52623Clytia hemisphaericaexon
TCONS_00027928-exon-sc0000657-1510915933:51672..51785TCONS_00027928-exon-sc0000657-1510915933:51672..51785Clytia hemisphaericaexon
TCONS_00027928-exon-sc0000657-1510915933:51191..51316TCONS_00027928-exon-sc0000657-1510915933:51191..51316Clytia hemisphaericaexon
TCONS_00027928-exon-sc0000657-1510915933:50418..50545TCONS_00027928-exon-sc0000657-1510915933:50418..50545Clytia hemisphaericaexon
TCONS_00027928-exon-sc0000657-1491911889:53024..53145TCONS_00027928-exon-sc0000657-1491911889:53024..53145Clytia hemisphaericaexon
TCONS_00027928-exon-sc0000657-1491911889:52486..52623TCONS_00027928-exon-sc0000657-1491911889:52486..52623Clytia hemisphaericaexon
TCONS_00027928-exon-sc0000657-1491911889:51672..51785TCONS_00027928-exon-sc0000657-1491911889:51672..51785Clytia hemisphaericaexon
TCONS_00027928-exon-sc0000657-1491911889:51191..51316TCONS_00027928-exon-sc0000657-1491911889:51191..51316Clytia hemisphaericaexon
TCONS_00027928-exon-sc0000657-1491911889:50418..50545TCONS_00027928-exon-sc0000657-1491911889:50418..50545Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027928-proteinTCONS_00027928-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000657supercontigsc0000657:50418..53145 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.33869	0	0.287611	0.0937943	0.114185	0.180462	0.326579	0.101913	0	0.0883807	0.0857845	0	44.5436	41.0541	82.0241	263.97	18.5605	19.3496	314.4	345.668	69.4225	62.6524	190.381	202.211	193.909	221.415	242.539	542.097	4.88695	4.88328
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027928 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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