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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027912 ID=TCONS_00027912|Name=TCONS_00027912|organism=Clytia hemisphaerica|type=transcript|length=1918bp
CTGAAAGTCTGAtagtaaaataataatttgtgGCTGTATAACTATGAAGT
TGCATCTACAACAATTTAAAAAGAGTGTGTGGATTTGTCCTTTCTTAATT
CTCTATCTCAAGGGAGAGGTTGTATCAAGTCTGAAAATTCCAGTATTCCT
TTGtcaaataacattttaaaataCAATTGTCTAGATCTTAGAGTTTATCT
TCTGTTGAAActtctttttacattcaaaataaCGTTGTTGATATCATCGA
TAACAAATTGTACGTGGTACCTGGGCGGGTACTTGGGCGGTAGAGGGCAA
GGGAATGTCTCACCATACTTCAGAGTGCTTTTTTGGAGAACGGAtctcaa
aaatcataaaaaaataacttCGGTTGTGAAAATTACCAATGTTAAGGGCA
ATGAAATTCCAGTTTTGCCAAATTCAGAAACTCGTGTGGTACATACCCGT
CATCCCGCAGGCCTAGTAACCTTGAGTGAATTGTTTTACGACTGATTTTC
GTCGACCGTTGACAGCCTTTTACAGTTTGAGCACAATGAAAAAAAGATAA
CTGCAGCACCAATAAGAGATGAGGATCCAAGGACTAGGACGACATAATCG
ATTTCTCTTAAACATCCAGTATCGAATGGTGTTTGTATAATTCTTCCTTC
GAAAACATTGAAACAAGATCGTCTCACTTTCTGCGTTCGGTATTGATATA
CCGCACCACCGATTCGGAAAAATGAAGCTATACCGAACACAACCATAGTT
ATTGAGATGATAACATTCAAGACCATACTTCTATTTTCTTTGTTAAGGAT
TTTTATTAGACCAATGAAATTGACGACACACATCACAAAGACATAAATAC
CAGACACAATATCCTTAACAACAATCCATTGTGCTGAATTCGAATGGATA
TATTTCTCCATGTAAAAATACTCCAACAGCAGCTCTGGAGCATTTTCATA
CACCAAGCCCAACGCAAACAGATGAAGCTTAAGTTCATCGAATCCAGATT
GCTTTGAATGCCATTCATCCATTGCCATTATCATGGCACGAATTTTAAAA
AAGTAGGTCACAAATAGAAGTAACATCATTGAAATGTACACCATTGAGTC
GTGATCATAAACAGCCGAGTCGATAAGTCTTCCTGAACTGTACTCTATAT
AAAGCTTGAAATCCAAACATACGTCAACTGCATCGTAAAGAAGCATGAAC
GATATCGGAAGTACAATCTCGacaaatttgatcaatttcaatattttttt
gtttttgatagtgCACGGATCAAGATGCGGTTTGATACCAATATAAATTG
GATCTAAACCTTCCTCGCAAAGTTTTTTCCAGTATTTTAACAGACATgag
aatgaaaatattgaacaGTACAAAGTCAATGGGATCGAcataaaacaaaa
tataaccatGACTATAATAAAACTGTTCTCAGGGTATGGTTTCCAAAGAA
CCTTCAGTCCACAGAATGTTGAGTTTCCATCAGATATGAAAGGAAGAGTG
TGACAGAAAGTGGAACTCGATGTAGGTGCTGGCGGAGGGAGACGGTTAAT
GTATATTGGAACCACCATATCCTCACTATGCCTGTGAATGGTTTACCAAT
TGATTAGTTTCTTTCATACGCCAAACTAACAAACTAAATTTATACTTCAC
ACGATAGATGATAGTTAATCGTCCAGGTATTTAGAGACAAATATCTTCCT
ACTTAGTAAGTTTATCTTTTCTAATATGATTGCCAAACCCGGCCAACCAA
AGTTGTTACAAATTCAGTTTTACAAAAGTTCTCTACCATACGAGAGTTAA
CTGTTCAGAAACTAAACTGGTTGTATACTGCTTCACCTTTTTATTTATat
gacaaaaatgacaaaaaccattaaatgaaaaatttggaaaaattcctCTG
TAAAGTCCCTATAGTGTG Run BLAST on NCBI protein sequence of TCONS_00027912-protein >TCONS_00027912-protein ID=TCONS_00027912-protein|Name=TCONS_00027912-protein|organism=Clytia hemisphaerica|type=polypeptide|length=360bp
MVVPIYINRLPPPAPTSSSTFCHTLPFISDGNSTFCGLKVLWKPYPENSF
IIVMVIFCFMSIPLTLYCSIFSFSCLLKYWKKLCEEGLDPIYIGIKPHLD
PCTIKNKKILKLIKFVEIVLPISFMLLYDAVDVCLDFKLYIEYSSGRLID
SAVYDHDSMVYISMMLLLFVTYFFKIRAMIMAMDEWHSKQSGFDELKLHL
FALGLVYENAPELLLEYFYMEKYIHSNSAQWIVVKDIVSGIYVFVMCVVN
FIGLIKILNKENRSMVLNVIISITMVVFGIASFFRIGGAVYQYRTQKVRR
SCFNVFEGRIIQTPFDTGCLREIDYVVLVLGSSSLIGAAVIFFSLCSNCK
RLSTVDENQS Run BLAST on NCBI transcript from alignment at sc0000653:182711..184628 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027912 ID=TCONS_00027912|Name=TCONS_00027912|organism=Clytia hemisphaerica|type=transcript|length=1918bp|location=Sequence derived from alignment at sc0000653:182711..184628 (Clytia hemisphaerica)
CACACTATAGGGACTTTACAGaggaatttttccaaatttttcatttaatg
gtttttgtcatttttgtcatATAAATAAAAAGGTGAAGCAGTATACAACC
AGTTTAGTTTCTGAACAGTTAACTCTCGTATGGTAGAGAACTTTTGTAAA
ACTGAATTTGTAACAACTTTGGTTGGCCGGGTTTGGCAATCATATTAGAA
AAGATAAACTTACTAAGTAGGAAGATATTTGTCTCTAAATACCTGGACGA
TTAACTATCATCTATCGTGTGAAGTATAAATTTAGTTTGTTAGTTTGGCG
TATGAAAGAAACTAATCAATTGGTAAACCATTCACAGGCATAGTGAGGAT
ATGGTGGTTCCAATATACATTAACCGTCTCCCTCCGCCAGCACCTACATC
GAGTTCCACTTTCTGTCACACTCTTCCTTTCATATCTGATGGAAACTCAA
CATTCTGTGGACTGAAGGTTCTTTGGAAACCATACCCTGAGAACAGTTTT
ATTATAGTCatggttatattttgttttatgTCGATCCCATTGACTTTGTA
CtgttcaatattttcattctcATGTCTGTTAAAATACTGGAAAAAACTTT
GCGAGGAAGGTTTAGATCCAATTTATATTGGTATCAAACCGCATCTTGAT
CCGTGcactatcaaaaacaaaaaaatattgaaattgatcaaatttgtCGA
GATTGTACTTCCGATATCGTTCATGCTTCTTTACGATGCAGTTGACGTAT
GTTTGGATTTCAAGCTTTATATAGAGTACAGTTCAGGAAGACTTATCGAC
TCGGCTGTTTATGATCACGACTCAATGGTGTACATTTCAATGATGTTACT
TCTATTTGTGACCTACTTTTTTAAAATTCGTGCCATGATAATGGCAATGG
ATGAATGGCATTCAAAGCAATCTGGATTCGATGAACTTAAGCTTCATCTG
TTTGCGTTGGGCTTGGTGTATGAAAATGCTCCAGAGCTGCTGTTGGAGTA
TTTTTACATGGAGAAATATATCCATTCGAATTCAGCACAATGGATTGTTG
TTAAGGATATTGTGTCTGGTATTTATGTCTTTGTGATGTGTGTCGTCAAT
TTCATTGGTCTAATAAAAATCCTTAACAAAGAAAATAGAAGTATGGTCTT
GAATGTTATCATCTCAATAACTATGGTTGTGTTCGGTATAGCTTCATTTT
TCCGAATCGGTGGTGCGGTATATCAATACCGAACGCAGAAAGTGAGACGA
TCTTGTTTCAATGTTTTCGAAGGAAGAATTATACAAACACCATTCGATAC
TGGATGTTTAAGAGAAATCGATTATGTCGTCCTAGTCCTTGGATCCTCAT
CTCTTATTGGTGCTGCAGTTATCTTTTTTTCATTGTGCTCAAACTGTAAA
AGGCTGTCAACGGTCGACGAAAATCAGTCGTAAAACAATTCACTCAAGGT
TACTAGGCCTGCGGGATGACGGGTATGTACCACACGAGTTTCTGAATTTG
GCAAAACTGGAATTTCATTGCCCTTAACATTGGTAATTTTCACAACCGaa
gttatttttttatgatttttgagaTCCGTTCTCCAAAAAAGCACTCTGAA
GTATGGTGAGACATTCCCTTGCCCTCTACCGCCCAAGTACCCGCCCAGGT
ACCACGTACAATTTGTTATCGATGATATCAACAACGttattttgaatgta
aaaagaagTTTCAACAGAAGATAAACTCTAAGATCTAGACAATTGtattt
taaaatgttatttgaCAAAGGAATACTGGAATTTTCAGACTTGATACAAC
CTCTCCCTTGAGATAGAGAATTAAGAAAGGACAAATCCACACACTCTTTT
TAAATTGTTGTAGATGCAACTTCATAGTTATACAGCcacaaattattatt
ttactaTCAGACTTTCAG Coding sequence (CDS) from alignment at sc0000653:182711..184628 >TCONS_00027912 ID=TCONS_00027912|Name=TCONS_00027912|organism=Clytia hemisphaerica|type=CDS|length=1083bp|location=Sequence derived from alignment at sc0000653:182711..184628 (Clytia hemisphaerica)
ATGGTGGTTCCAATATACATTAACCGTCTCCCTCCGCCAGCACCTACATC
GAGTTCCACTTTCTGTCACACTCTTCCTTTCATATCTGATGGAAACTCAA
CATTCTGTGGACTGAAGGTTCTTTGGAAACCATACCCTGAGAACAGTTTT
ATTATAGTCatggttatattttgttttatgTCGATCCCATTGACTTTGTA
CtgttcaatattttcattctcATGTCTGTTAAAATACTGGAAAAAACTTT
GCGAGGAAGGTTTAGATCCAATTTATATTGGTATCAAACCGCATCTTGAT
CCGTGcactatcaaaaacaaaaaaatattgaaattgatcaaatttgtCGA
GATTGTACTTCCGATATCGTTCATGCTTCTTTACGATGCAGTTGACGTAT
GTTTGGATTTCAAGCTTTATATAGAGTACAGTTCAGGAAGACTTATCGAC
TCGGCTGTTTATGATCACGACTCAATGGTGTACATTTCAATGATGTTACT
TCTATTTGTGACCTACTTTTTTAAAATTCGTGCCATGATAATGGCAATGG
ATGAATGGCATTCAAAGCAATCTGGATTCGATGAACTTAAGCTTCATCTG
TTTGCGTTGGGCTTGGTGTATGAAAATGCTCCAGAGCTGCTGTTGGAGTA
TTTTTACATGGAGAAATATATCCATTCGAATTCAGCACAATGGATTGTTG
TTAAGGATATTGTGTCTGGTATTTATGTCTTTGTGATGTGTGTCGTCAAT
TTCATTGGTCTAATAAAAATCCTTAACAAAGAAAATAGAAGTATGGTCTT
GAATGTTATCATCTCAATAACTATGGTTGTGTTCGGTATAGCTTCATTTT
TCCGAATCGGTGGTGCGGTATATCAATACCGAACGCAGAAAGTGAGACGA
TCTTGTTTCAATGTTTTCGAAGGAAGAATTATACAAACACCATTCGATAC
TGGATGTTTAAGAGAAATCGATTATGTCGTCCTAGTCCTTGGATCCTCAT
CTCTTATTGGTGCTGCAGTTATCTTTTTTTCATTGTGCTCAAACTGTAAA
AGGCTGTCAACGGTCGACGAAAATCAGTCGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027912-exon-sc0000653-1491911889:182711..184628 | TCONS_00027912-exon-sc0000653-1491911889:182711..184628 | Clytia hemisphaerica | exon |
| TCONS_00027912-exon-sc0000653-1510915933:182711..184628 | TCONS_00027912-exon-sc0000653-1510915933:182711..184628 | Clytia hemisphaerica | exon |
| TCONS_00027912-exon-sc0000653-1575043694:182711..184628 | TCONS_00027912-exon-sc0000653-1575043694:182711..184628 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000653 | supercontig | sc0000653:182711..184628 . |
Blast
The following BLAST results are available for this feature:
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