TCONS_00027903 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027903
Unique NameTCONS_00027903
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length801

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027903 ID=TCONS_00027903|Name=TCONS_00027903|organism=Clytia hemisphaerica|type=transcript|length=801bp
CACTGCAACTCGTGAGGATCGCGATGACGGTTACGGTGGTGTTATTATTA
TACGAAAGAAAGAACTTAAGATTGAAGAAATACGTGTTCAAAGCTCAGAC
ATTGTTGCAATAAAGGTCATAACGTATGAAAAACCTGTGCTTGTTTGTGC
TTGTTATCGATCTCCAAGCAACAAGAAAGAGGACAATAAAGTTATTATCA
ACAAACTTAATGATCttcttaaaaaacataaaaacaaccCTATTTGGTTA
GCAGGTGATTTCAACCTCCCAGACATTGATTGGAATAGTAATAGTATTGT
TGGAAATGCTAATTCAGTTCAATTAAATGAAGACTTTCTTCAACTTTTTG
ATCAACACAAAATGTCTCAACATATCAATTTCAATACAAGAAAAGAAGCT
CTCTTAGATCTGCTACTCACAAATAGACCTACATTCCTTGTTCGCTGTCT
TCCAGTGGCAGGTTTTGGTGATCATGACACATGCGCCATCGCTGACATTG
TATGTCATCCACAAAAATTCAAACCAGTGCAACGCACAGTGTATTGTTGG
AATAGAGCCAATATTCAGAACCTTCGCCAAGACATAGATACCAACATCAA
GAATTTAGTCGCATCAACAACTCCTGATACTTCTGTTAATGACATTTGGA
TAAACTTGAAAGACATTCTTCTTACTGCGCAAGCCACACATGTTNTCCAC
CCTTATGGCTTGCTACAACAAATACTTCTTATCATAAGTGGCTCAGTTGA
AGTGAACCCAGGACCAAGAACCTATAAGATTAAATTTCCATGTGGTGACT
G
Run BLAST on NCBI

protein sequence of TCONS_00027903-protein

>TCONS_00027903-protein ID=TCONS_00027903-protein|Name=TCONS_00027903-protein|organism=Clytia hemisphaerica|type=polypeptide|length=266bp
TATREDRDDGYGGVIIIRKKELKIEEIRVQSSDIVAIKVITYEKPVLVCA
CYRSPSNKKEDNKVIINKLNDLLKKHKNNPIWLAGDFNLPDIDWNSNSIV
GNANSVQLNEDFLQLFDQHKMSQHINFNTRKEALLDLLLTNRPTFLVRCL
PVAGFGDHDTCAIADIVCHPQKFKPVQRTVYCWNRANIQNLRQDIDTNIK
NLVASTTPDTSVNDIWINLKDILLTAQATHVXHPYGLLQQILLIISGSVE
VNPGPRTYKIKFPCGD
Run BLAST on NCBI

transcript from alignment at sc0000653:8143..8943

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027903 ID=TCONS_00027903|Name=TCONS_00027903|organism=Clytia hemisphaerica|type=transcript|length=801bp|location=Sequence derived from alignment at sc0000653:8143..8943 (Clytia hemisphaerica)
CAGTCACCACATGGAAATTTAATCTTATAGGTTCTTGGTCCTGGGTTCAC
TTCAACTGAGCCACTTATGATAAGAAGTATTTGTTGTAGCAAGCCATAAG
GGTGGANAACATGTGTGGCTTGCGCAGTAAGAAGAATGTCTTTCAAGTTT
ATCCAAATGTCATTAACAGAAGTATCAGGAGTTGTTGATGCGACTAAATT
CTTGATGTTGGTATCTATGTCTTGGCGAAGGTTCTGAATATTGGCTCTAT
TCCAACAATACACTGTGCGTTGCACTGGTTTGAATTTTTGTGGATGACAT
ACAATGTCAGCGATGGCGCATGTGTCATGATCACCAAAACCTGCCACTGG
AAGACAGCGAACAAGGAATGTAGGTCTATTTGTGAGTAGCAGATCTAAGA
GAGCTTCTTTTCTTGTATTGAAATTGATATGTTGAGACATTTTGTGTTGA
TCAAAAAGTTGAAGAAAGTCTTCATTTAATTGAACTGAATTAGCATTTCC
AACAATACTATTACTATTCCAATCAATGTCTGGGAGGTTGAAATCACCTG
CTAACCAAATAGggttgtttttatgttttttaagaaGATCATTAAGTTTG
TTGATAATAACTTTATTGTCCTCTTTCTTGTTGCTTGGAGATCGATAACA
AGCACAAACAAGCACAGGTTTTTCATACGTTATGACCTTTATTGCAACAA
TGTCTGAGCTTTGAACACGTATTTCTTCAATCTTAAGTTCTTTCTTTCGT
ATAATAATAACACCACCGTAACCGTCATCGCGATCCTCACGAGTTGCAGT
G

Coding sequence (CDS) from alignment at sc0000653:8143..8943

>TCONS_00027903 ID=TCONS_00027903|Name=TCONS_00027903|organism=Clytia hemisphaerica|type=CDS|length=798bp|location=Sequence derived from alignment at sc0000653:8143..8943 (Clytia hemisphaerica)
GTCACCACATGGAAATTTAATCTTATAGGTTCTTGGTCCTGGGTTCACTT
CAACTGAGCCACTTATGATAAGAAGTATTTGTTGTAGCAAGCCATAAGGG
TGGANAACATGTGTGGCTTGCGCAGTAAGAAGAATGTCTTTCAAGTTTAT
CCAAATGTCATTAACAGAAGTATCAGGAGTTGTTGATGCGACTAAATTCT
TGATGTTGGTATCTATGTCTTGGCGAAGGTTCTGAATATTGGCTCTATTC
CAACAATACACTGTGCGTTGCACTGGTTTGAATTTTTGTGGATGACATAC
AATGTCAGCGATGGCGCATGTGTCATGATCACCAAAACCTGCCACTGGAA
GACAGCGAACAAGGAATGTAGGTCTATTTGTGAGTAGCAGATCTAAGAGA
GCTTCTTTTCTTGTATTGAAATTGATATGTTGAGACATTTTGTGTTGATC
AAAAAGTTGAAGAAAGTCTTCATTTAATTGAACTGAATTAGCATTTCCAA
CAATACTATTACTATTCCAATCAATGTCTGGGAGGTTGAAATCACCTGCT
AACCAAATAGggttgtttttatgttttttaagaaGATCATTAAGTTTGTT
GATAATAACTTTATTGTCCTCTTTCTTGTTGCTTGGAGATCGATAACAAG
CACAAACAAGCACAGGTTTTTCATACGTTATGACCTTTATTGCAACAATG
TCTGAGCTTTGAACACGTATTTCTTCAATCTTAAGTTCTTTCTTTCGTAT
AATAATAACACCACCGTAACCGTCATCGCGATCCTCACGAGTTGCAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015772XLOC_015772Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027903-proteinTCONS_00027903-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027903-exon-sc0000653-1491911889:8143..8943TCONS_00027903-exon-sc0000653-1491911889:8143..8943Clytia hemisphaericaexon
TCONS_00027903-exon-sc0000653-1510915933:8143..8943TCONS_00027903-exon-sc0000653-1510915933:8143..8943Clytia hemisphaericaexon
TCONS_00027903-exon-sc0000653-1575043694:8143..8943TCONS_00027903-exon-sc0000653-1575043694:8143..8943Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000653supercontigsc0000653:8143..8943 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.745152	0.782314	1.26064	1.12544	2.17147	0.892609	1.09967	0.975796	0.590835	0.581039	0.303789	0.435948	1.30851	0.918872	0.78725	0.606357	0.919092	0.969766	0.610764	1.14974	0.79167	0.949585	0.370638	1.02174	1.0511	1.26334	1.34495	0.916185	0.728603	0.521821
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005135Endo/exonuclease/phosphatase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027903 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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