TCONS_00027900 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027900
Unique NameTCONS_00027900
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length749

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027900 ID=TCONS_00027900|Name=TCONS_00027900|organism=Clytia hemisphaerica|type=transcript|length=749bp
ATTCTATGATTATTTATCCCTTGGAGTTAACTCAGATACATTCACAACTT
CAACAAAACATAAATATGAGGGAATACAAGCTTGTCGTTTTAGGATCTGG
TGGTGTCGGTAAATCTGCCCTGACTGTACAATTCGTCCAAGGTAtctttg
ttgaaaaatatgacCCCACCATCGAAGATTCATATAGAAAACAAGTTGAA
GTTGACGGTCAACAAGCAATGTTAGAAATTTTAGACACAGCTGGTACAGA
ACAATTCACAGCTATGAGAGATTTATATATGAAAAATGGACAAGGTTTTG
TCTTAGTATACTCAATCACAGCACAAAGTACGTTTAACGACCTCATGGAC
CTGAGGGATCAAATTCTACGCGTAAAAGATACCGAAGATGTACCCATGGT
ATTAGTCGGTAACAAATGCGATCTCGAAGATGAACGAGTAGTCGGTAAAG
ATAACGGACAAAATCTCGCCAAACAATTCGGAAACTGTACCTTCATGGAA
ACATCAGCCAAAATGAAGATTAACGTTAGTGAAATGtttttcgatttggt
tcgacagATTAATCAAACGAGTCCAGTGGAGAGGACACGAACACGATCTA
AAGGAAAGAAATGCGtcattttgtaaacaaactgtttgGAGAGATTCAAT
ATCGAAACCATGACTGTTTTTGGTCTCTTTCAGCATAGATGCTTTAACAT
GAACTATGGTGCTGGGTTAATCTTTGAATGCATTTCTATTCGAGTGCCC
Run BLAST on NCBI

transcript from alignment at sc0000653:159898..170679-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027900 ID=TCONS_00027900|Name=TCONS_00027900|organism=Clytia hemisphaerica|type=transcript|length=10782bp|location=Sequence derived from alignment at sc0000653:159898..170679- (Clytia hemisphaerica)
ATTCTATGATTATTTATCCCTTGGAGGTACTAGATTGAACTTTTCCGCAT
TTAAACTTATTTTGTTTGGGGTTTGTTTGTCCCGTGATCCGGAATTTTCC
AAAAACTAAAGGAGGGGCCGTCATCCCGGCCACCAGTTCTACATATAGAA
TTCCTACGACCGCGCATTATAAATTTTGAAATAAACAAGGCGGCTCCGTG
GTGATTGGGCAAGCAAGAAGTGCCTGAAAGAAATTTGTGATATTTTTGCT
GAATTAATCATCGTTATTTTGAAAATGTGAATGGTGTCTGTGTGAATTAT
TTGACCTTGGATATTTAGTTTTATGTATTTTTATTTTTTTGACTTTTTCT
AGTTAACTCAGATACATTCACAACTTCAACAAAACATAAATATGAGGGAA
TACAAGCTTGTCGTTTTAGGATCTGGTGGTGTCGGTAAATCTGCCCTGGT
AAGGACAGTTGTTGTCTATACAATATATATGTACAATGTCCTCCCAATTG
TTATATTTCTGATTTGCATTTTAACGCAAGAATCTTGTGTCTTTTTGACG
ATTTGTTTTAAAACAACAAAATCATCATTTTGTCTGTTTTATTTTGTTGA
CTTGATTTCTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGAACCA
ATCGAACATAGTCAACAATCAATCGAACCAATCTAACCTTACTCGAACGC
AATCGAACACAATCGAATATTACCCAGGAATCGACCGTTCGCTTGAGATT
CGATTACGTTCGACAATCGAATCGCAATTATTCAATCGCATTCGATTACG
TTTGATTGGTTCGATTGCAATTTTTGTTCGAAGTTGTTCGATTGACACTG
TCTGGTTATAGTGATCATTTTAAAATATATATTCTTCCCGCAACTAAACT
TTTGTTTGAAATAAAATTTTGACAACCTCTAAAATTCAGTATAAAATATA
AAAAACCATAAAATAAAAACCTTCTTTCTTGGATGTAACTGTATTTTGAT
AATAATTGAATTAGAGGGTCTTGCTATGTATATACCGGGAATTAAGCTAT
GATGATGAGTTACTTTTCACATTCTTAAGTGAAACTGAGAAAAAAACTAT
GTGCACCAAAAAGTTTCACCATTATAGTGGCTTTTGCACCATGTACACTT
TCCTAGACAACGATCTCAAATATCTTAATTTTGCGTCCTCGTTTGGTCTA
AAAAGTGAGTACCGTAGAGTCGTTTAATCTCGACATACGTCTTGCAATCT
CGACACCGGATCTGTAAAATAATCAAAACAAACCTTGAATGAAATTCTTG
GTATCATTCTTATCGAACAAGTTCATCCATCAAACTAGAAGTTCAGTAAA
CATTGCAATCCTTTCAATTAAAAAGAAAGCCAAATTACAAGCAGTTTTAC
ACAACACACGAAACGCATGCAAACTTCCTCGTCACTTTCTCGTGTCCATC
ATTAAAATTTTACAACTTTATTACGCTTCAAGTCACGTGATAAAAATAAT
TCGCGCGCTTAGCCTGGTTTCCTCTTCCTTATATANNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNCATTAAATTCAAAAGGAAACCGGGTTCTTTTTATTA
TTTTCGGTTCACGGTAAAAATGTCTACTAAAAAATTCCTCGCGTGCAAAA
TGTTGTGTTGTTTTGATTTAGACATCTTCGTTCAGTTCGTTGAAAGCATG
CTAATTAGTTTTTAGCGATTACTACATCGTTAAAGTTTTCTTTTCAAATA
TAAGTATAAGTAATAACACTTCACATTTCTCATATTATATTNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNTGGTATGTATTTGTTTATGTTTGATTTTT
TATTTCGAAGACCAGCCTACAGCTATGTCGAGATTGCAAGACGTATGTCG
AGATTAAACGACTCTACGGTAGGTTGGTCAAAAAAATTTTCAGATTTTCT
TAAACTTGGTTTGTGGTCCCTTCAACCGCCTGAAGGGCGTTAACTGAGGC
GAAGAATGAAAATGTTCGATAGCAAGCCAGCGAAAATGACGCGTGTTTTG
CGTGGTCTCATTCATGACCTTTGAACACTGACCTTTGACACAAAATGGCG
CATGTAATGATAAACAAATGCACTAGAAATCGCTCTCAAAAAATCAACAA
TAATAAAATTTTTGAGCAAAGGTAACGTTGACTCAAAAAATCTGACGAAT
TTACTGACTCCTCGACTCAATTTTCAAAAGTCAGTTGGGCGATGCGAAAC
GAAGATTTTTCATTTGTCATTGCCATCCTATGAAAAAGCATAATAAACAC
TATACCATAAGGCAATTACTTTTTTATTTTCTGGTTTACGGACATTTGGA
GATGATCTTTTGGACCGGAGGATGGAAAAAAAATAAAAATAAAATTGCTC
TTTTCAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAC
CCTTTTACTTGCCCTTCTTGCTTTTATAAAATGTAATTTTCTATAAAGTT
TCCTTTTTATGGCTGTTCAGTACAAGGTCGGAAGAGCATAAATAAATAAA
ATACTGTAAAATCCAATTTTATTTTTATTTTATTTTTGCAAAAAAAACGT
CGGCGATTCCGTAAACCAGAAAATAAAAAAGTAATTGCCTAAGTTGGACT
GATATTGACATCCCTTGTATAATTCGGACACCTTTCTTAGAGATAGGATT
AAAGGGAAGGCCGGAAAAAATTGTGTTTTCTGAGAGGTAAAAGTTTTTTT
TGAAAAATTTTGGCCGATAAAAACAAGGAGAGAGGGGTCTGAAGCTTATT
TATAAAATAAAAAATTTGAATGTTTTTTGTCAAGGACCTCTTAACATACT
AAGATATTAGACTCGTTATTACCGTCAACTGCTCTAACTTGGGACGATTG
GTCAAAACAAGGTATTTCTGGTCTGTATTTTCACTTACTGTTAAGTCTCT
TTGACAACAAATTTGTTTTCGTTTATTTTTTAATACGCCGTTCATTAAAT
CAAATCAAATGACTTTGGAGGTTCGGTGAAATGGTGGCCGAAATTGCCGA
CCCATGTTTTGTCAGATAGTCCCAAATTGGAGCAGTTGACGGTAGGTCGT
AGTATACTAAGAGGTTGTAGTATGCTAAGAAATTGATGTCTTAGAATCCT
AAAAGTGCGATGATTTTCTCAGCGATTGTGTATAGGTTCTTTTCGCAAAT
ATTTTTACTGCAGTTTATGATATTTGGGATAGAAATAATTCAACCAACAT
GTTGAACACACAGCGGTTTAAAGAAGGGTGTCAGAATTCAATGAGGGATG
TCGACATTAGGCCAATTTACGGGAGTAAGTTGGACTAATGTTTACATAAG
TTGGTCTAATTCGATTCAGTCACTCTTTTTTAGAAGTAGGAATAAAAGGA
ATATCTGAATTAACGATTGAAAAAAAGTGGATTGTCAAAGAAATATAGTT
TTGATCAGTGATTCTGATCTTCATAATTCATATCTCTAAAGGCAGATTTT
AGAATTAGATGAGGGATGTCAACATTAGACCAACTTTTATTTAGTAACAA
TAAGAGAATGTCATATGCTCCAAAAATTGTGGAACCATGGCTAATTGAGC
ATTTGACTTAATGCAAAAATATTTTTGTTATACTATCTGTCACTGAAAGT
TATGATGTCTGAGATTTTGATACCAATCTGGAAGTGTAGGTTTCTGAAAA
TATTTGTTGGTATTTGGAATTTTCATCATAAAATGGATTATTAACTAAAA
CTCTTTTCTGAGATTTCCTAATTTTGATATGTATTATAATACATTTACAA
GATGGACTCTAGTTAAAGCTAGTGCCATCTAATGCATATTTTACTATTAT
TTATTTCATTTAAAAATGTGACTAACTGTAACAATCTAATTAACGAGGGA
AGATAAACCAGAGAAAAAAAAAAACAGTTTTCACTCAAAATAAGATTTTG
ATTCAAATACATACATGACATGACCAAATTTTACTTTTAATGCGGCATAT
TATACTAGAGTTTTTATAGGAATAAATTTATGTGAAAATAAGAATTATCC
TTCAACTGACAGTATATTCAGTCTGTTTATAATTCTTAATGGGTTGAACA
GTTTTTGAAAACAAAAAGCTGAACATGTTAAAAAAATATTCTTTAGAGAA
ATGTGTGTGTGTAAAGCTAAAAACAGGATAATGCTTTTATATTCGTTGTG
TTAATGTCAAAAAAATGAAGTAGAACATTAAATCAGAAAAATTCAATGAC
GTTATTGTCATGGACACTTTTTATTATCATAATAATAACACTGAATAAGA
TCGATTATTTCAACTTGAAAAGAGATAGAAAAAGCCTTTTTAAGGATATG
ATTTAATTACAAGAATTACGATATTGATTTAAAGAAGGCAACGACAGGAA
GTGATAGCATGTACTTTGTTTTTGTTGTGCAGCAGTTATACTACTTCCTT
ATAAATTCCAAAACTGTGACTTGTATTGCAAAGCATTAGATTTAAAATTA
CCTTTCTGTTTATTTTTACAATGGATTTCCTTTCTAAATCGTAGTGTGAT
GCCCTATGATGTCACGTTATATGTATAAAACAAGATTTTGTAAAAATATA
AGTTTCCTTTCTAAATCCACAACAATTAAAAGATCTCACGATGTAACTTT
TTGAGCCTTATTGCCTACATTAAAAATGCATGATGATAAGAAAACCAAAA
TAATATTAATATTAATTAAGTATAATTCAAATCAAATTTTTCTAAATACT
AATGACCTAAAGGCCAACTTCGTCAATCATCATCATTTGAATTGTACCAT
GTACATACCTCTATAAACACCCAATATCACCATAAATCTAAAATGAATAA
TGCTTCTTGTCACATCATTAAAAGATTCATAGATTAAATTTTAGGTTTTT
AACTTTAAAAAGTTGTTCTCCAAGGTGTTTCAGCTTTTTTAAGGTTCCTT
GCCTAATAAATCTCAGAAGAATGTCACCAATTGGTATTCTCAATGTTAAA
TGTTTTTTCATTCCTAGACTGTACAATTCGTCCAAGGTATCTTTGTTGAA
AAATATGACCCCACCATCGAAGATTCATATAGAAAAGTAAGTGATTTTCA
AAGAATTATAACTGTAGATCAGCAGATGTCAATGTAGTCGAAATTTGTTG
ATAATATAGTTGATATTTGATATTTTGTTTAAAGATTTATACAGTATGAC
TGTCCAGACTCAACGAAGATGTTTACAGTTCAATGCCCTTTCGTTGTATT
ATTCTGAAATCAACAAAATGTCCTGTTATATTTTCTAAAACCTTGTTGAA
GTTGGTTTTAGATTTATTTTGTGTATATATCTTTCTGAATTTTTCTTAGT
CTGAGCACCATATTAGATGTTTCAGTTTTATTGGTTCATTTTAAGAAATT
GAGTTAATGTGAAAAATATGATATATTGTAATTCTTTCTTTTAGCAAGTT
GAAGTTGACGGTCAACAAGCAATGTTAGAAATTTTAGACACAGCTGGTAC
AGTAAGTCATGATTTTTCTTTTATCTCAATTTTGTTTGGACAAATAAAAA
TACCTAGATTTATATATATTAAAAATGGACAAGGTTTTGTCTTAGTATAC
TCAACCACAGCACAAAGCACAATTTTTTGTTTGAAAGAATCTAGGTATTT
CAAACAATTTTCTCTTAATCTTTATGTTCTATCAATTCCATGTTTCAAGC
TTCAGTTTTATCGGTGAAAATACAAAGGCTTTTTTTACCACACTTATCTA
TTCCTTTGAATAATTTTATCTTCCAGGAACAATTCACAGCTATGAGAGAT
TTATATATGAAAAATGGACAAGGTTTTGTCTTAGTATACTCAATCACAGC
ACAAAGTACGTTTAACGACCTCATGGACCTGAGGGATCAAATTCTACGCG
TAAAAGATACCGAAGATGTAAGTTTTATTTATGTTTTTGTTATCACAGTT
TCGTCCAAATTCTTACCTTTNAGATGTAAGTTTTATTTATGTTTTTATTT
TATTTTTATTATTATTATCACAGTTTTGTCCAAATTCTTACCTCCAGTGG
ATTGTCACAAATATCGTGAATTTTGGCCCTTTTCAAGGATCAACAGGATA
TCGATAATATCTAATATTGAGATTAGTTGTTTTGAAAAGGTACAAACTAT
TGAAAAGTTGTATTGAGGAGGAACTACTTTTATTTCCAAAAATGGTGACA
TTTCTTAATTCATTTCACTTTATTGGAATGATTGTATGTGCAAGAAAACA
TCTAAACATGGTCTTATTTTCCAAAAAAAATTGTTTCCAAAAAAGATTGT
TATTGTAATTTTATGGGTTGTAATAAAGGGTTTTCATCAAATTTTCAAAC
AATATAAAATATTTCATTTGAAAAAATGTTTACAATTTAAAAGAATTATT
AGGTTGTTTTTGTTTTTCAAAACAGCAAAACTTTCTGACAACGCTAGCAA
CAGAACCTTTTAATTTGGACACAGTCATCATACAAGTTATTATATAACCT
CAACTAAAACTTAACTCGTCAATTATCTGTTTCGATAAGTGAAAAATTCT
TGAGGCTGTTATCACCAGGTTATTATCTTTTAATTGACACAATAAACGAT
CGTTAATTGATGATATAATCTTAAGGTGTGTTTGCTGCCTCTGTTTTCAA
AGATATTTTCTGTCCTAAATTATTATGTACTTTATTTATGAAATAACGTT
TGATTACAAAAAGTTCATATCTAATCATCAGATGATGAAATAAAATAAAG
AAAATTTGTAAATTTTAATGTTCATGAAAGGTTAAAAAATTCTTCTTTTT
TATGCCAAATGTAACAAACTTTAAATACAATAACAATAAGCTCATATTTA
TGAGAACCAATGAGCTAAGGCAAAGGAGACAGGCTTACATTGCTTGTTTA
AAAGGGACCGAGCTAAACAACATCAATTTATACTGACAATCAATTACATA
TTTTAAACATTTTTAAATGTATAAAAAACTACTTACAAAACCTTTGCATT
CTATTTTTAAGCCAATCAGTAGAAATTTTTGAAAACCATCAGTGAAAATT
TCAAGTAATTTTTTGTGACCGTTATACGGCCAAAATACTCAATTTTGAAT
TCAGTTTTAAAACTCAATATTTAAAAAAATTTACCATGTGTCAGCAAAAT
ACCAAGAATGTAAGAAGGTGGGTAGAATCAAAATTCTCTTCGCTTTATGA
TAAGCAATCCTTTAGATTAAACTTTTCATAGGGCATCCAAGGGGTCTTTA
GACAAATTTCAAGCCCTGTCATGGGTATTGATTGCTGTAAGTGGTTACCA
AGCTGGTGAAAACTCAAATTCTAATCAGAAAAAACGGCCAGTGGTAGAAG
TGCTTGGAATTTTGTCTGATATTTATGAGTCTTTATTAACCCTGGCAATA
GTGATTTTTAAGTATCCTTGGTATAAAAACATGGAAAATTTAAAAAAAGT
CAATAATTAATAGTAATTATTATTTCTCTTTCATGATTCTCAGGTACCCA
TGGTATTAGTCGGTAACAAATGCGATCTCGAAGATGAACGAGTAGTCGGT
AAAGATAACGGACAAAATCTCGCCAAACAATTCGGAAACTGGTATGTTAA
GTTTATATTTTTTCCTTGGACTTTGTTCATGGATTCTGGTTCTGTATCTC
TCTGGACTGTAATGGAGCTATTCTATTGGTCAGAAATGAAGCCAGTCGCA
AATTTGACCAATGAAATTGCTGCTTTTCCTTTCAGAACGATACCGAACTG
GGAGGTCTGAGTATGACCAAACAAATACTTCATGGGATCATCCCCCCCCA
GGAAGATGGGGGGGAATCAGATTTTGGTGCCAGGGGGGAAGTGAAANNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNGGGGGAGCACGAATTTTAAAGACAGGTGGGGGGGAAAGGCCAGAT
GGGGGATTTTAGCTCATATTAGGGGGGACCAAAAAGCTGGAGGACGCCAT
GTACTTTCCAAAAACCCTTTACCAAATGCTACTGTCATGTATAAATCACA
TTTTTCTCGAGATGGATACATTTGAACTGGTTTGGCCTCGCTCTGATTGT
TTTAACCATTTGACCTATTTATACGTAAGATTAAAAAAAAAACAGATCAC
GAAGCCTCATAATGTTTCTTGAATGTATTCTATCTCGAGAAAAGAACATT
CTTTAGTGATTGAATCTAAAATCAGCTTTAGAAGCTCTACCATCATGATT
TATGCAAATCCTTACCAAACACACTAACAACGCTAACAAACTTTCATTCA
CAAAGCGAGTTGACGGCGCCTTTAAAAACAGGTTTTGGTGACTTTTTTGG
TGACTTTTTACGACAACCATCATATTGCTTGACATCAGCATTCGATCCAA
TCAACACACAGACTAACCATGCACTTTCACCCGACTCAAGGACAATATAA
TGGACTGTTGACATTTTTCCATATACATTGGACCATCAATTTTTCATTGT
CATTTTTGATACCTTCTAATGAGGTTGGTATTGTACATTACTCTTTATAA
TAATTCATATACACCCAAAAAAATAAATTCGTCAGCCAATACACTATATT
TGAAACTCTTTGTATTTGGGCTCTTTAGAGTTCTGTGTTAGGCTGATTTT
CAACTTTCCCAAAGGTCAAATTAGAACTTCATTCATTAGAGCCAATTAGA
ACAACTTGGCAACTAATGATAATTAATTTGCAGCTTCTGCAATTTTAAAT
CAATTAAACAACTTTTCAATGGAATTTTTCCACTTTTGTAATATCAACAA
ATGTATCAATTTTGTGGTTTCGTATAAAATTTATCTGAACTACCTTTTTA
GCTACTATTGAAAAACTGAAGCATTGGTTTCGAATTTGAGATACTATTTC
TCACTTTTATATTCAGTGCCATAAAACAACACCATGACACCATCTGCCTA
CAATACAACACTGCACTACTACATCCATAATATATCCTAACTACTTTACT
ATAATACTCTATAACACCATGCATCCATTCACTCCAACAGATTATAACTG
TTTTTGCACGGGTTCATTCAGTAATTCAGGAATCATTTTCTGACCATTTC
TTTCATTTTGTAGGTAGGTTTTCCAACATTCTAGCTTTAAGATAAATATT
ATTTTTAAATTTCTTCTTAGTACCTTCATGGAAACATCAGCCAAAATGAA
GATTAACGTTAGTGAAATGTTTTTCGATTTGGTTCGACAGATTAATCAAA
CGAGTCCAGTGGAGAGGACACGAACACGATCTAAAGGAAAGAAATGCGTC
ATTTTGTAAACAAACTGTTTGGAGAGATTCAATATCGAAACCATGACTGT
TTTTGGTCTCTTTCAGCATAGATGCTTTAACATGAACTATGGTGCTGGGT
TAATCTTTGAATGCATTTCTATTCGAGTGCCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015769XLOC_015769Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027900-exon-sc0000653-1575043694:170654..170679TCONS_00027900-exon-sc0000653-1575043694:170654..170679Clytia hemisphaericaexon
TCONS_00027900-exon-sc0000653-1575043694:170232..170327TCONS_00027900-exon-sc0000653-1575043694:170232..170327Clytia hemisphaericaexon
TCONS_00027900-exon-sc0000653-1575043694:164294..164362TCONS_00027900-exon-sc0000653-1575043694:164294..164362Clytia hemisphaericaexon
TCONS_00027900-exon-sc0000653-1575043694:163879..163935TCONS_00027900-exon-sc0000653-1575043694:163879..163935Clytia hemisphaericaexon
TCONS_00027900-exon-sc0000653-1575043694:163463..163603TCONS_00027900-exon-sc0000653-1575043694:163463..163603Clytia hemisphaericaexon
TCONS_00027900-exon-sc0000653-1575043694:161789..161886TCONS_00027900-exon-sc0000653-1575043694:161789..161886Clytia hemisphaericaexon
TCONS_00027900-exon-sc0000653-1575043694:159898..160159TCONS_00027900-exon-sc0000653-1575043694:159898..160159Clytia hemisphaericaexon
TCONS_00027900-exon-sc0000653-1510915933:170654..170679TCONS_00027900-exon-sc0000653-1510915933:170654..170679Clytia hemisphaericaexon
TCONS_00027900-exon-sc0000653-1510915933:170232..170327TCONS_00027900-exon-sc0000653-1510915933:170232..170327Clytia hemisphaericaexon
TCONS_00027900-exon-sc0000653-1510915933:164294..164362TCONS_00027900-exon-sc0000653-1510915933:164294..164362Clytia hemisphaericaexon
TCONS_00027900-exon-sc0000653-1510915933:163879..163935TCONS_00027900-exon-sc0000653-1510915933:163879..163935Clytia hemisphaericaexon
TCONS_00027900-exon-sc0000653-1510915933:163463..163603TCONS_00027900-exon-sc0000653-1510915933:163463..163603Clytia hemisphaericaexon
TCONS_00027900-exon-sc0000653-1510915933:161789..161886TCONS_00027900-exon-sc0000653-1510915933:161789..161886Clytia hemisphaericaexon
TCONS_00027900-exon-sc0000653-1510915933:159898..160159TCONS_00027900-exon-sc0000653-1510915933:159898..160159Clytia hemisphaericaexon
TCONS_00027900-exon-sc0000653-1491911889:170654..170679TCONS_00027900-exon-sc0000653-1491911889:170654..170679Clytia hemisphaericaexon
TCONS_00027900-exon-sc0000653-1491911889:170232..170327TCONS_00027900-exon-sc0000653-1491911889:170232..170327Clytia hemisphaericaexon
TCONS_00027900-exon-sc0000653-1491911889:164294..164362TCONS_00027900-exon-sc0000653-1491911889:164294..164362Clytia hemisphaericaexon
TCONS_00027900-exon-sc0000653-1491911889:163879..163935TCONS_00027900-exon-sc0000653-1491911889:163879..163935Clytia hemisphaericaexon
TCONS_00027900-exon-sc0000653-1491911889:163463..163603TCONS_00027900-exon-sc0000653-1491911889:163463..163603Clytia hemisphaericaexon
TCONS_00027900-exon-sc0000653-1491911889:161789..161886TCONS_00027900-exon-sc0000653-1491911889:161789..161886Clytia hemisphaericaexon
TCONS_00027900-exon-sc0000653-1491911889:159898..160159TCONS_00027900-exon-sc0000653-1491911889:159898..160159Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000653supercontigsc0000653:159898..170679 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
86.7255	74.9597	64.0161	55.784	25.5774	26.6187	91.2028	108.156	171.743	135.022	151.021	127.582	124.23	101.344	92.4873	82.0947	193.594	230.295	70.2139	94.7263	229.547	233.564	154.24	156.149	131.947	139.43	80.2565	69.6949	160.38	158.27
Blast
[Close]
BLAST of TCONS_00027900 vs. Swiss-Prot (Human)
Match: RAP1A (Ras-related protein Rap-1A OS=Homo sapiens GN=RAP1A PE=1 SV=1)

HSP 1 Score: 286.574 bits (732), Expect = 2.604e-97
Identity = 151/172 (87.79%), Postives = 163/172 (94.77%), Query Frame = 3 
Query:   66 MREYXXXXXXXXXXXXXALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQAMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLMDLRDQILRVKDTEDVPMVLVGNKCDLEDERVVGKDNGQNLAKQFGNCTFMETSAKMKINVSEMFFDLVRQINQTSPVE 581
            MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVD QQ MLEILDTAGTEQFTAMRDLYMKNGQGF LVYSITAQSTFNDL DLR+QILRVKDTEDVPM+LVGNKCDLEDERVVGK+ GQNLA+Q+ NC F+E+SAK KINV+E+F+DLVRQIN+ +PVE
Sbjct:    1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINRKTPVE 172
The following BLAST results are available for this feature:
BLAST of TCONS_00027900 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RAP1A2.604e-9787.79Ras-related protein Rap-1A OS=Homo sapiens GN=RAP1... [more]
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