TCONS_00027893 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027893
Unique NameTCONS_00027893
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2094

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027893 ID=TCONS_00027893|Name=TCONS_00027893|organism=Clytia hemisphaerica|type=transcript|length=2094bp
AAAATGTTAACACCAACATCGATTCGATTGTTCATTATGGATGAAGCAGA
TAAATTGCTGGAGAAAGGCTCTTTCGAAGAACAAATCAATTGGATTTATT
CAGCATTacctaaagaaaaacaaatgttGGCATTATCAGCAACTTACCCA
GAAGTCCTTGCGCAGCATCTGAATAATTACATGACAAATCCGATTCATGT
TCGAATCAATCCCAAAGATGTTGCATTAACTGGTGTCGTGCAATTCAAAA
GACTTGTCAAACATCACACCCTTCCCAATAAGCTGTTTGAAGAAAAAtAC
AAAGTCTTGATCGAGATCTTGAAGAAATTAACATTCCAGCAATGCATGGT
GTTTTCAAATTACCACTCAAGAGCTGAACATCTGTCAAGGACCTTGATCA
AAGAAGGATGGCCTTCCACACATATTGCTGGATCACAGATGCAATCAGAC
AGGTTAAAAGCGATCGATAAACTGAAGACGTTCCAATGCAGAATTCTCAT
CACAACTGATCTGACAGCACGTGGTATAGACTGTGACAAAGTCAACTTGG
TGATCAATCTTGATATCCCATGGGATGCGGAGACCTATCTTCACCGCGTT
GGCCGCGCGGGAAGATTCGGAAGCCAAGGAATCGCAATATCGCTTGTTAG
CAGTTCGGGAGAAGAAAAATATCGCTTAGAGGAGATTGCGCGGTCGATAT
CGCGAGAATTAACTCCGCTACCAGAATTGACAAAACTACATGATTTATGG
CCCAGCTTAGATAAATATCGCAACAAAATTCTTACAGATGAGAAACTTAA
AAATGTTGAAGTAAACGAAAACAACGAAACTTCAACTCAATTTTCGTCTA
ACGAATCCCGTGAAACGAAGCTGTCGTCAAACGAAGACTCGAACGAGAAC
GACAATGAAATCACGACGAAATGCGAGAATAAAACCGAGGATTTTGCTGC
CCAAAGCCCTGATGATTCTCCTACCacgaaaattgaagatgagaggGAGC
ACAATGCAACCATTGATGAGATTCAAAATCAAATGAAGGATGAAAAAGAG
CCTACACAGTcatcaatgttggaatcaagaTCCCGATGTGAACACAGTCC
AAGTAGAACCAAAGAGGATAAATTAGCTTTCAAAATTGATAACCATTTAC
AGTCGGTAGATTCAAATCAGTCCAGCAATACCAGTGGCCTGGATTTTAAC
AACGAGCTTGGAACTCTTGATCAATTTGCGGATATTAACTCTACCAATGA
TCTTAGAAAAGACATTATGTgtaattcaaatttaaattcaaaatcaagCC
CTGTTTTTGAAGACAGAGAAAATTACGAAACTTTTTCGCAACATTGTTAT
GACAATACTATCTCCACTGCACGCGACCTTCAAACTTACTATTCAGAGAA
AGACAGATTTGAACAAGAACCAGAAAAAGGTAGATCTACAAGAACTAAGA
AAActgtaaaatcaaaaaacaaaacaagtgaAAACTTGAAAACAGAAGAG
CACTACATGAGATCCGAATATTCAGAGTGTGACCAAGCCCCAACTCAAGG
TGACCATGACCCAGAGANCCATGAGATCTGAATATTCAGAGTGTGACCAA
GCCCCAACTCAAAGTGACCATGACCCAGAGACTTTTAACATGACCTTGTT
CACACATTCTATAATGAAATCATATTATGAACAGATGAATGCTATTCAGC
AATATGGAAGCCAATACTATGGTGGCTGGAGATGAACTTATACGTTTAAA
TAAAGACTTTTTCTTataatataacaaaaaaatactaatctttgctttta
tttttagtGAAGAACTTTTTTGGTAAAGGATGCATCTTGAGTATGCTATA
CGAACGTTTGTTGCAAGATTTgtactaatttttttaatccttGAACAGTA
TATTTCACTTTCTTGAGATATTCTAGAAATCGTACCTTTTTCAACTTTCC
TCTTACTAAGTTCTCCACCCTTTCCTTCCAGAGgctaaatttgaaaacaa
agatgGAAGAAGGTTtctttataatcttgtctctgtAGGACATCGCATGT
TGGCGAGGCACGCGCTAAGTTGGCTCAATTGCTTAATGATTGCG
Run BLAST on NCBI

transcript from alignment at sc0000653:113915..129948+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027893 ID=TCONS_00027893|Name=TCONS_00027893|organism=Clytia hemisphaerica|type=transcript|length=16034bp|location=Sequence derived from alignment at sc0000653:113915..129948+ (Clytia hemisphaerica)
AAAATGTTAACACCAACATCGATTCGATTGTTCATTATGGATGAAGCAGA
TAAATTGCTGGAGAAAGGCTCTTTCGAAGAACAAATCAAGTAAGGTTATT
TTTGCAGCCAAAAAAAGCTGTCAAATTCAGGTTCAACAGTAATttcacga
atattactaggcaagtatttaacggccttgaaatttgtaCGATCTGAAAT
TAACGCGAATgtttctgctttttcaaggaaacaattaagggggtttttat
aaacatgaaattgttcaattcgtgttaataaaatgactagtaatattcgt
gtaataaggtaaatCCGTCCTTAAAAAATTGATTCTCTAATTAatacttt
ttacaaaatttaacGTTTTCTAAAACctaaatgactttttttaagGCTTG
TCTTCTTACAATTTGAAAGCTACCGAGGACTATATCGAAGTTTTGACTAA
TGAAGTTGTAGTTTTGCTTACCTGATCCCAACAATATTATCCCTATGTAT
AATGCTGATACAGCATTACAAAATTCGCTTATACAAAGTGAATCAACAAG
TAATGTTAAGATTAAAAGGGGTTTTAAAGGATTTCTAGGTGTACTGTACA
AAAACTTCgtaaaattaaagtctgaagtcaATTTTCGCTAAGCTCGAAAT
TTTGATGTGCTTGTTACATAACCTTTATTTCTGGTTGGTtgaaatttatt
gacactaacaAATTTAagtgtaagttgtaaagcaagtaacatgggaacaA
AATCAAGTGAAtattttcgagtaatcacatgttttgactgcactgcTTGT
ATTCGATGTTGTTTCCTTGTATCCAACAACTTCCTTTACCGAcaattaca
tatttttttatataaacatccaaaatttttgaagcctttggatgttctga
actttttgagttttaagcctgaaatgttcttagcaggttcttattttccc
cattttgtgagtattcttgtccattttcctaagaaatcgggtgttttaga
gtctccaaagccttataatgttcttaagttAAAACCATCTTCAGTGCTAG
ATGTTTAAAAAGTAAATGAATTTTAAGAAAGATTAAGTTCTTGAGTTGTT
CTTACCATTTCgttcatcgaagccttatgttcttatatagtttgttctta
aaacgTGTACAATACGACAAGAATTCTAAAATTTAACCCGATTTCATTTC
CTCTTTTAGTTGGATTTATTCAGCATTacctaaagaaaaacaaatgttGG
CATTATCAGCAACTTACCCAGAAGTCCTTGCGCAGCATCTGAATAATTAC
ATGACAAATCCGATTCATGTTCGAATCAATCCCAAAGATGTTGCATTAAC
TGGTAAGTTGTTTGAACACTTCTTGatcaataaaatttataaatctccac
catctttgattggagttttttggacctaccccggtggggtagaggcacag
atatctgtaaagcccgaagggctagatttgcggcttttatcaaaaagtga
agctcatctttggaaggatttcctatcagagtcacgtgactaaaatatgc
aatttcaccggtttgagagatgtgaaatagNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNttttttttgctggagaaagcttaaagttgcctatctagc
ccttcgggcttagatatctgtgggtagaggtcctataaattgacctgtgt
tcgttcgtccgtccgttcgttcgttcgtctgttaccaacttttctcagga
ttgaatcataggaatcctttgatttttggtacaaaggtgcaaaatggtag
ttgGCAAAATGTGATAGAGCCCgacttttttttgctcatgagggcttact
tttgaagaatttgtgtgtttagacatgaaattttggttgcttggcgtgtt
tttatagaaaaactggcgaaattcgacatttttttataagcacattatca
attaattAAGtgttagcttttctcgagatcggctcttttattctttatga
ttttttgcacaaagatgcaactataaaccctcgaatgtgacggagctcga
tttttgggaaAGAATTTtagggtaaatttcagctacaaaacggctaaaaa
aagggttttttgtatgaaagtagataaaagatggttcaagctgatttttg
taaaaaaagaatttttccgctcaaaaaacgcatctttatctataagaatc
actatcaataagcatacatcaatgttctcagccaaattactgaattttct
gatgagatagatgtttttttgctcacgaagtcttgaatataaaaaaatat
ttcaagagcatgaaagtttggtttctaaacgtttttttataagaaacaaa
caactaattttaatagatcgtcactatttgtgttttgaatgattttttaa
tggtcacgctcacgtagatatcaattatatacgTGTTAAATgtataacca
ggtaggtccataaaagtatcacttttttgaaagttgtacCCGCTCAGAAG
CCATTACAGTGTTATAACTTTCCCTAACGTCAAACAGCCCtccacgaacc
cacgagacattttaacccacgaacacccacgatggcacgaacccacgaac
ccacgaacccacgacacgcacgtaacccacgtaatttagcagactccatC
ATAAGTGTTCAAGGAAAAGAAACTGCCTCCAGGGTCTATATAAAGCTCAG
TGTTTTTTACCTTTCTTATTCACAGATAAAAGATTCACTCCATAAACACT
TTCATTCCAAGGtcttaaaaaaattagaatttacAAAGCGACGTCTTGCT
TCTATGTGGAGTTATAAGCCATCAAAGACGGGTCTATTAGGGGATCATAC
GGCGGGGCTGTAGTTTATGTCTAAAAATCTAGCTGAATGAATTTGAAAGT
GTTCCCAATATGGTTATGGAAAAAATGTCTGATAACCTATTACTTTTGTT
TTGCTCAGGTGTCGTGCAATTCAAAAGACTTGTCAAACATCACACCCTTC
CCAATAAGCTGTTTGAAGAAAAAGTATGCATTTTAATATTAATATtatta
tctttcttctttccaatggaaaagGATCGCCGCGGTTAAATCTATTAGTA
TTAGATCTcaagaaaatttatttgaaagagaggaacttttttgtggcgca
cccggtagaatgTCTCTTGTTGCCTCTATTGTGGAGTGTTGTTCTCTTTA
AACGTACGAACTCTTCAACTTAAGTCACGTTACATGACGTTATATAGTTT
TTCGTCTTTTAAAGGAGTATTCCAACGCAGCTTTTCGATGGTTTAGTAAC
TGGTGGTCTGCAAATTTGGAGAAAAACGAAATATTCTACTCTATAAGGCc
agaaatatttctaaattcaaagtctttctttgtatttttagtACAAAGTC
TTGATCGAGATCTTGAAGAAATTAACATTCCAGCAATGCATGGTGTTTTC
AAATTACCACTCAAGAGCTGAACATCTGTCAAGGACCTTGATCAAAGAAG
GATGGCCTTCCACACATATTGCTGGTTGGTATCTGTTAAGCTCATTAATT
CGATTGATTGGGAACAAAAATACAGCCAATTATCTCTAATTCgattctat
ttttttattttcttatgcTACAAGGGGAGGCTTCAAACTTAACGATTTAG
CTCTTGTTTAGATAGCGCACATTCCTCTCCTCAATGTCATACCCTCTTTT
GACTTGCAATGCAATGACTTTCTTCAGTCTCTTCCAAGGTCTTAACTGCT
AACTTTCTGCTAACTTTTGCCAAGTCGGACGGCTAAACTAGAGATTATTT
TGTATTTCAGGATCACAGATGCAATCAGACAGGTTAAAAGCGATCGATAA
ACTGAAGACGTTCCAATGCAGAATTCTCATCACAACTGATCTGGTAGGCT
TGTGGAATTTTTGGCGATAAGAGTCACTATTTATTAGCACAGCAGCCGTG
ACATAAAGGTAGAACACCCAGCTACGGTGCGTAAGGTTGTGGGTTCCACC
CCCAGTCGGGTCATGTTAAATCTTTAGAAATAAGAGTCACTATTTATTCA
TGGTGCATACCATTGCAATGTCgttcacggacccaacagctgattggttg
taagtgacgtaacatctgttaatacgtcactttcaaccaatcagctgttg
ggtccgttgaagacattgcaatggtgcatatcaagaATAAGCACAGCGGC
CGTAGCATGAGGTAAGAGCATCCAGCTACTtcgccgggtcataccaaaga
ttcccaaaatggtacttgatgcctctctgcttgatgcttagCATTTAAAG
AAGACGGTCAAGTGTAGTGGAGAAATCCATGGAAAGGATTTGCGGCATCC
CTATCTAGACAGCTATAGAAAAATGAGCCTATGGGACGTCCCCGAGAGAG
ATCACAAACTTACTTATTTATATAAACACATATCAATTTGTTTACCAAAT
TACTGACTTTTTTAGAATCTGACTGAAAAATTGCCACCGCCATCTTTTTA
TTGCGgtgtatttttttttcgttcttcACAAAAAGCTGTTCTGATAACTC
TGTGCTGCGCTGTGCTGCGCTGTGCTGCGGCGGTTTTACGTAACAAAGAA
CATGCGAAGATTATGAGGAGTAGGCTCGCATCGACCTTCGAACATTGACC
ATCCTCAGATttgaatgcagacgatctaggatAACCAGACTGCAAATTAT
gaataatttacaaaaattgaTTTATATGATGTCGTCTGACAAGTGACATA
AAACTAGCAATAATAAAAATCATAATCAAATTTTATCTAAAAGGATTTTT
GCCTTAAGCAATTttgaataacccgcagttcgaaacgcaggtcacaggtc
atacaaactacagacgGGAAAACTGCAACGCACTTGTAACATATAATTCA
TAATatctttcttaaaattttatacTGTATGCCggataaaaatattcaat
tatCAAATACCGTAAAGTGTCACCTACCAAACCATTTATGTTTTGGAATC
TACAGACACTCCTTTTTCCGAACATTTTGGAGAATCAATGTAACACTTAa
cgttttaaaagttttacagcctcaatttgagattttttaattCTCCAACT
TCCATGTTATATATTATATTGTGATATACTTTTGAGTGGCACAGTATAAT
GaatgaaagttttttacaacccttatagTTGATATGagattttttggacc
tacctccgggtaccccggtggaggtcctttaaattaacccatgttcggtt
cgttcgttcgtctgttactagcttttctcgcgattggctcattacatttt
tctgtttttttggcacactgatgcaaaatgacaatatcaaaatgtgacgg
agcctgattttcgaaaaacatttttttccggccgaaaatgccggaaatat
gccggaaaaactgtttttttttggcattttctcgagattttatcattagt
tttttctgattttttgctcaaagatatgtattagcaatgcccaaaacatg
gccaagtttgatttttgagaaaaaatttttcccggtttgaaatgccagaa
atatgccggaaatcgccgtttttctggattttcattggactttttcctta
taattgttttttttttttagtgagCAATGCTCACTATCAAGCataattca
attgtcaataaaactgatttttgcgaccagaactttctatttattttttt
cctacaaccCTTCCATGTCCcccaatcaacaatcaatgatgaatttattg
cgttatgcatttttgctaaacgctatattttctgactgatttttttcatt
tttctttttgcattgctatctaactttcatcatcaggtaggtccattcag
catctaattttaatttatagaagtgtatttctcaggtctattgacctcta
tgaaacaatcttacatctttacaatttatagatcttatctttccattcgt
ttgtcaatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACTCCAAGATCC
TTCTCTTGATCAACATGTTCTAGGACAGAGCCAGCGATCTCGTAAGGATG
TGCATGTTGAATGTTCCAGAATTTCCCTAGTGTCAACACTTGGTACTTGC
CAGGATGGAATCTCAACAACCAGTCACCAGACCACTTTTCCATTGCCTCG
ATATCGTGCTGAAGTCTAATTGCATCTTCAGcgttatttatttcttcaac
aAGCTTTGTGTCATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNCTTCGAGTTTTCTTAGTAATCTGCGATGTGGAACGGTGTCAAATGCC
TTTGCGAAGTCGAAATAGATTACGTCAACAACCTTATCATTGGATATCGA
GTCTGCACATCTGTCTAAGTAGTGAAGTAGTTGTGTCACTGTCGATCGCT
TACCCATGAACCCATGCTGTTTGGTTGATAGCAATTTCTCATTCGTGAGG
TGTTCCattatttgtttctttaggATTCTTTCCATTACTCTACACGCAAC
TGATGTTAAACTAACGGGCCTGTAGTTTTCTGCAAGgttcttttttcctt
tattgTAGATCGGGGACACATATGCAGTCTTCCAATCATCAGGTAGTTTA
CTTTCTACGAAGGACTTGGACATGATAGTATGTAAAGGACCGGCTATGTA
AAAGGCCAGCTTTTTCAGCATGACTGGGTGTATCTCATCAGGTCCTAGCG
ATTTATCTACCCTGTCTGTACGGTTCTTTGAagattcaaaaaaaacaaaa
agcatAGGGCTGCACATTTTACACTTAACTTTTTTGCTCATTTACCCCTG
GGAGAATACTAAATGAaatacgttttttttatatatatataaggataacg
tttataagcatatacaggCTCGGTTTTTTGGTACCTAGTAAataatggct
ctattgtttaataacaatagaatgttaagcataatgcgagcctgatacaA
AAAATCATGTAAATTCGTCTTGAATTCTACAAACAACAATTAAGATCAga
cataaattttatttttaaatattctcTCCTATATAAGTTACGGCCTAACA
TATAAAAATAATGAGCAAATACTAGTTTTACTAAAACATATGTAATAGCA
TTTTTCGCCTATAATTTGCGATAAACATTTCCATTACAGAGAACATAGTA
ATAGTGCTTGTATAATTTGTTATTGTGACAGAACCTAACTCGTGGGTTAT
GAGTTTCTTCATTGCATTTGTTGGTCTTGGTGATGGCGACTccattttgg
caaatttgtgTTAAAATGTCATACGTGCTAGttctacaaaaagaaaattt
gaaaatgcgaATGTGAAAACTCTCCCCTTTTTGATCTGTTTCGATATGAT
CGACGAATGCTGGAAAAACTTGAAttattggaaaaaaagtttctccGATG
TTTAAAAGTATGATTATAAAGATCATAAATtcaaatccaaaattttcaaa
gctttgtgatgttcttaacttttgagttttaaccctattattatcatgCT
Ttctcggattttgtattctcaaggggggggggtgtttttcaccttgcata
acttttgatctagaaaagatatggacttgaaatttggcaaaaatgttttc
taccataaaaggagtttatagaaaaaaatttgggttgatgacgtcatcat
aaaggtgatgacgtcatcacaaagtttcacaattatcgctgacccatgaa
aaagtactattcaataaaatagcaattaaagttgaacaaatggagatttt
tccattctgttttgaatttctaaaagccaaaaagaatatctttaacatat
ttgctggtttttaacatactaataaaattgagGTTTAAAAtcaatgcaga
aaatgagtaaattttttcaaaaaacaatgacgtcatttttgatgacgtca
gcagtttttgaaaatttttaagatatgttttaaaatttattattgatacc
taaaacctgtcaaaatttgaagtcagttggatgcctagatcaaaagttat
gctaaatttaagattttgggattttacagggtttNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgga
aacccccccccccccagataaaaatagggttaagcctgaatttgttctta
acatgttcttgttttcaccattttgtgaatatttttgtcgatcttagaaa
ataggtgttttaggGTCTACAAAGCTTTAGCActttcttagcatgttctt
gaTACTTtgcccatcgaagccttatgttcttatacagtttgttctcATGA
GAAAACGTGTATCACTCGACCACCAAGTCAGACCTCAAAAAGGAAATCAG
TGGTCAAGTTACCTGGAAAAAGCAAAGAGAACAACCACTTACCCACAACA
TCGGTAGAAAGACCTTTTTCCATTGACGCGACCATCACAACACCATTCTG
TCACTGGATCGTACAGGGTTCCACTACCTGAaaagtaaaagttaaaaaga
tattcaacatCCGAGAACTGGCCTTAAACACAAGTGTTCTGAGATGCATA
GGCCGATTCGACAAAATCCAGTTAGGGACTATCTTCAAGCAAACCTCAAG
CTAGCTGCCTGTTTCTAACTGACATAAATTTCACCCACGAAACAAAAAAC
TATGAGCAGGTCtaaacgggaaatatttgaagattttgagcgGTCAACGT
GCTACTAAATCATCCTGTACATATTCTTTCTaacatttcttagaaaaaat
agCTAatcgtgggtgaaaatgacgtTACACGGAATCGTAAGGAATTTATA
TTCATCTCTGCCCTATTGTGTAACGCGTTCAACTAACTCAACCCCCTCCC
CTTCAGTCCGTCACTCCTAGGGTTACAAAAGTCTTTTTAACAAATGttaa
taattcaaaattagcCTTTGTAAGGGTCAAAATAGCTTTTAGTTTcgtga
gaaaaataatttaaaaaatcttcctaaggttaggaaattttttttaaatg
tctctCTCCAagagtcaatttttgaaataaaacatcTATGTTCTCTCTAA
AGGTCAGTTTCGGGAGGtcccatccgcacatacccgacaaccctagtacc
cccccccgtaCTGCACTGTTATGAAATACAACTTACAATATTGCCAAGGA
TTTTTTGAGTCGATCTCACCATCATTGTTTTGAGATATCATTCCAGTGTT
ATTCATATCACTACCATGAACTATGCCCAACAGAAGGATAAttaaagaaa
tagaaatagcCAATCTTGCCATGATGAATTGATCTGTTGGAAGAAGAgtc
cttttttgaattttttgtgatGTCTTAAAGGTTTATTTTAACCAGTAGAT
ATATCTTGTAGCTTGTAGTgattttctggtctgggatatAAGCCTTTTAT
AGGTATGTTGTATGTAGATTTTAAGTTATTTAAGTAAATAACGTACGTCa
tatttttaatggttttttctacttttacttccaaaattcttttttcaatt
tttacttaTAATGTCAAAAAGGTCACTAGATGACTTTTTCACTCAAATGA
AGTTTGaattttacaacattttttgatAATAAAGACCTCTAGTTTGTATG
ACAAGCAACGTCATCATTTGTCGGCTGAGGCCCCATACATTGTCAATTAT
CCAATTAATGATATGGGTCTTCTAGAGGGGTGTTTGACTGTGGTGACAGT
ATTGTGCTTTTTTCCGTCGGTGTTTTGATGTTTGCTGGCTTAGATATTCT
TACCATGTCCTTAATAAGGGTTTAAATcctgttaaaatcagtactttcta
TAAAGTGACTTCTGGAAAATCTAAGGCGCAGATTGTTCTAAGTCTATTCa
caataagtgtgcactcttttttcaaacgttatcactgtgaaaaaaaattt
caaaaaataattcagtcaaaagatatcaaacaaagttataagctgattga
cgtcgaaaaacgctgttttctgctgttttctgctgtttttttgggtcaat
cacttattaactttatatcataactttatattgaataaatattttagtga
aatttcttcacaatgATGagctcctaagatcaaagaatctctccagtgaa
aatgaaagttaaagcacttttcacttttttcatttttttcttcttcattt
tcatcttcgtttttagaattcttttaaagacttttttatttcaaattgtt
tcactcacaaatatctctccaacgatattaaatttataaagattgaagaa
ttccttcaaaagttatagctaaaagaaaaagagtgcacacttatcgtgaa
cagactttaatttgTTCTaaggttttggtcaattttcagttttgtgTTCT
GAATTGTTCTTAtgtataaaaaaagcgtgtaaacaTTAAATCGAGATCGA
AATCTCCGATTAGAATAACCATAACGAGACTTATAAACTTTATAAATCag
catttctttttttctgaataaATCCATAATTGCATCCGTCAATATTAATT
TCGTTGGAACAGGGATCGACCGTGGGGACATGGGATAGGGATTGAAGTAG
AAGTATTCCAGGTGGTTTACGTGGGAAGAATATTGAAGTTAGGATAGATG
GAGGATTTGGGTAAAATTTCACTTTCTAGACTAAGGTTTCATTGTAACTC
TCCAGCAGAAAAAGATTAGAACCCCGGCtagttgaaaaatgaactgCGGA
AAGTTCGCCTGTTTTGACACAAGCTATATATTCCGTACATTGAGAAAAAC
CCTTTACCATCTTCAGTCCGTTAAGCCTTGGTGAAACAGTGCATATGTTC
TGGAAAAGTCAATCGAATCTTTGTCCGGAAAGTGAAATCATTTACCCAAA
ATGACGGTACGAATAAAATTGGACAAAACTTTCAACCATAATTTGCTAAG
CCCACTGCAGTAATTTCCTTTCATTACTATTTTCAATAATTATTTAAAAG
TCCCACGTCTTTTGAGGAATCGGTACGTGCTCCAAAAACAAATAATCGCA
ATTTTGATTGCAAAATTGAACTCGATTTTGAATGTGCACATTGGAGTTTA
CTTTCGACAAGTCCTGATTTATTATTACTTAATTATGACTCAATTATCGC
GTTGGTTGGTTACCTGCCTAATCACTTTTCCGGGCTTTTTATTTTCCTAA
CCTGTTAtagcaaagaagccattgcagtgttgaaaaattaacgtctaacg
gcacTACATTATCAAAAGTATCTTAGGAAAGGTTGATCTAGCGGTCTCGA
TGCATTCACACCGATGTTGAGTACTACTTCCATTAAGGTACCCCTTTCAA
AAATAATCTCCGATCAAAGACTTTGGTTGGCCGAGATTGAGAAGCTATGA
GCGTTTGTATGGCTTTATTTTCTAACCATGAATTCAGCTTTACACTCAAC
GATAGTACTGTAGGGGGGGATGAAGTAGTAGTACTGCCATTGGGGTACcg
ctttcaaaaaactccgattaaagaactgacctttataaaccctgcACTAA
GCTAtacccgccatctttgatcagagttttttttcgaaagtgtTAATGTA
AAGAAatattgcagtgttaaaaatcaacgtctaacggcgctacataaTAA
AAAGTATCCAAGGAAAAGTAGATAAAGTGCTCTGGATGCATTTCCACCGC
TGTTGAGTAGTACTGCCATCGGGGTACCGccgctttcaaaaaaaatctcc
GATCAAAGGTTTTGCCGGGATTGAAGAACTTGGTACAGGGTATATAGAGA
TCAGTGGATCTAAGACTTTCGTTGGTCGGGATTGGGAAACTATGAGCGTT
TGTATGAAGCTCAATGGTTTTCCTAACCAAGCGATTCAGCTTTACACTCA
ACGATTAAATCTTATTTCCCTTCTTTCAGACAGCACGTGGTATAGACTGT
GACAAAGTCAACTTGGTGATCAATCTTGATATCCCATGGGATGCGGAGAC
CTATCTTCACCGCGTTGGCCGCGCGGGAAGATTCGGAAGCCAAGGAATCG
CAATATCGCTTGTTAGCAGTTCGGGAGAAGAAAAATATCGCTTAGAGGAG
ATTGCGCGGTCGATATCGCGAGAATTAACTCCGCTACCAGGTAAGTTCTC
AGAAATAAGATTGAAACGGACGTGTGCTTACTCAGGGTAAACTATTTGAG
CTTATCACTTGAGGTAGGCATCGCTTTTATCTTAAAGCATACCagtggtt
taaaaaaaaatccatttttatgCCTGTCCCTTCCTTCAGCTACCTATAAT
TAGCGGAAATGGCAGCTTAgagaaagaaaagattttcataAATTAAAATC
GATTTTATGTTTAGAATTGACAAAACTACATGATTTATGGCCCAGCTTAG
ATAAATATCGCAACAAAATTCTTACAGATGAGAAACTTAAAAATGTTGAA
GTAAACGAAAACAACGAAACTTCAACTCAATTTTCGTCTAACGAATCCCG
TGAAACGAAGCTGTCGTCAAACGAAGACTCGAACGAGAACGACAATGAAA
TCACGACGAAATGCGAGAATAAAACCGAGGATTTTGCTGCCCAAAGCCCT
GATGATTCTCCTACCacgaaaattgaagatgagaggGAGCACAATGCAAC
CATTGATGAGATTCAAAATCAAATGAAGGATGAAAAAGAGCCTACACAGT
catcaatgttggaatcaagaTCCCGATGTGAACACAGTCCAAGTAGAACC
AAAGAGGATAAATTAGCTTTCAAAATTGATAACCATTTACAGTCGGTAGA
TTCAAATCAGTCCAGCAATACCAGTGGCCTGGATTTTAACAACGAGCTTG
GAACTCTTGATCAATTTGCGGATATTAACTCTACCAATGATCTTAGAAAA
GACATTATGTgtaattcaaatttaaattcaaaatcaagCCCTGTTTTTGA
AGACAGAGAAAATTACGAAACTTTTTCGCAACATTGTTATGACAATACTA
TCTCCACTGCACGCGACCTTCAAACTTACTATTCAGAGAAAGACAGATTT
GAACAAGAACCAGAAAAAGGTAGATCTACAAGAACTAAGAAAActgtaaa
atcaaaaaacaaaacaagtgaAAACTTGAAAACAGAAGAGCACTACATGA
GATCCGAATATTCAGAGTGTGACCAAGCCCCAACTCAAGGTGACCATGAC
CCAGAGANCCATGAGATCTGAATATTCAGAGTGTGACCAAGCCCCAACTC
AAAGTGACCATGACCCAGAGACTTTTAACATGACCTTGTTCACACATTCT
ATAATGAAATCATATTATGAACAGATGAATGCTATTCAGCAATATGGAAG
CCAATACTATGGTGGCTGGAGATGAACTTATACGTTTAAATAAAGACTTT
TTCTTataatataacaaaaaaatactaatctttgcttttatttttagtGA
AGAACTTTTTTGGTAAAGGATGCATCTTGAGTATGCTATACGAACGTTTG
TTGCAAGATTTgtactaatttttttaatccttGAACAGTATATTTCACTT
TCTTGAGATATTCTAGAAATCGTACCTTTTTCAACTTTCCTCTTACTAAG
TTCTCCACCCTTTCCTTCCAGAGgctaaatttgaaaacaaagatgGAAGA
AGGTTtctttataatcttgtctctgtAGGACATCGCATGTTGGCGAGGCA
CGCGCTAAGTTGGCTCAATTGCTTAATGATTGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015765XLOC_015765Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027893-exon-sc0000653-1491911889:113915..114003TCONS_00027893-exon-sc0000653-1491911889:113915..114003Clytia hemisphaericaexon
TCONS_00027893-exon-sc0000653-1510915933:113915..114003TCONS_00027893-exon-sc0000653-1510915933:113915..114003Clytia hemisphaericaexon
TCONS_00027893-exon-sc0000653-1575043694:113915..114003TCONS_00027893-exon-sc0000653-1575043694:113915..114003Clytia hemisphaericaexon
TCONS_00027893-exon-sc0000653-1491911889:115124..115266TCONS_00027893-exon-sc0000653-1491911889:115124..115266Clytia hemisphaericaexon
TCONS_00027893-exon-sc0000653-1510915933:115124..115266TCONS_00027893-exon-sc0000653-1510915933:115124..115266Clytia hemisphaericaexon
TCONS_00027893-exon-sc0000653-1575043694:115124..115266TCONS_00027893-exon-sc0000653-1575043694:115124..115266Clytia hemisphaericaexon
TCONS_00027893-exon-sc0000653-1491911889:117073..117137TCONS_00027893-exon-sc0000653-1491911889:117073..117137Clytia hemisphaericaexon
TCONS_00027893-exon-sc0000653-1510915933:117073..117137TCONS_00027893-exon-sc0000653-1510915933:117073..117137Clytia hemisphaericaexon
TCONS_00027893-exon-sc0000653-1575043694:117073..117137TCONS_00027893-exon-sc0000653-1575043694:117073..117137Clytia hemisphaericaexon
TCONS_00027893-exon-sc0000653-1491911889:117506..117638TCONS_00027893-exon-sc0000653-1491911889:117506..117638Clytia hemisphaericaexon
TCONS_00027893-exon-sc0000653-1510915933:117506..117638TCONS_00027893-exon-sc0000653-1510915933:117506..117638Clytia hemisphaericaexon
TCONS_00027893-exon-sc0000653-1575043694:117506..117638TCONS_00027893-exon-sc0000653-1575043694:117506..117638Clytia hemisphaericaexon
TCONS_00027893-exon-sc0000653-1491911889:117925..118007TCONS_00027893-exon-sc0000653-1491911889:117925..118007Clytia hemisphaericaexon
TCONS_00027893-exon-sc0000653-1510915933:117925..118007TCONS_00027893-exon-sc0000653-1510915933:117925..118007Clytia hemisphaericaexon
TCONS_00027893-exon-sc0000653-1575043694:117925..118007TCONS_00027893-exon-sc0000653-1575043694:117925..118007Clytia hemisphaericaexon
TCONS_00027893-exon-sc0000653-1491911889:128144..128354TCONS_00027893-exon-sc0000653-1491911889:128144..128354Clytia hemisphaericaexon
TCONS_00027893-exon-sc0000653-1510915933:128144..128354TCONS_00027893-exon-sc0000653-1510915933:128144..128354Clytia hemisphaericaexon
TCONS_00027893-exon-sc0000653-1575043694:128144..128354TCONS_00027893-exon-sc0000653-1575043694:128144..128354Clytia hemisphaericaexon
TCONS_00027893-exon-sc0000653-1491911889:128579..129948TCONS_00027893-exon-sc0000653-1491911889:128579..129948Clytia hemisphaericaexon
TCONS_00027893-exon-sc0000653-1510915933:128579..129948TCONS_00027893-exon-sc0000653-1510915933:128579..129948Clytia hemisphaericaexon
TCONS_00027893-exon-sc0000653-1575043694:128579..129948TCONS_00027893-exon-sc0000653-1575043694:128579..129948Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000653supercontigsc0000653:113915..129948 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
15.0002	13.6198	9.66843	8.34145	10.6214	7.76621	9.38095	10.3458	6.38397	6.04258	6.15962	4.55364	3.40846	3.26396	4.02062	5.50981	6.2552	4.41495	2.43213	3.05	4.73697	5.27286	13.6066	10.8669	3.8263	4.75783	3.00835	3.0411	8.05616	9.83999
Blast
[Close]
BLAST of TCONS_00027893 vs. Swiss-Prot (Human)
Match: DDX20 (Probable ATP-dependent RNA helicase DDX20 OS=Homo sapiens GN=DDX20 PE=1 SV=2)

HSP 1 Score: 276.944 bits (707), Expect = 6.100e-81
Identity = 131/240 (54.58%), Postives = 177/240 (73.75%), Query Frame = 1 
Query:    7 LTPTSIRLFIMDEADKLLEKGSFEEQINWIYSALPKEKQMLALSATYPEVLAQHLNNYMTNPIHVRINPKDVALTGVVQFKRLVKHHTLPNKLFEEKYKVLIEILKKLTFQQCMVFSNYHSRAEHLSRTLIKEGWPSTHIAGSQMQSDRLKAIDKLKTFQCRILITTDLTARGIDCDKVNLVINLDIPWDAETYLHRVGRAGRFGSQGIAISLVSSSGEEKYRLEEIARSISRELTPLPE 726
            L P SIRLFI+DEADKLLE+GSF+EQINWIYS+LP  KQMLA+SATYPE LA  L  YM +P  VR+N  D +L G+ Q+ ++V  + L +K+FEEK + L E+  ++ F Q +VFSN HSRA+HL+  L  +G+P+  I+G+  Q+ RL A+ KLK F CR+LI+TDLT+RGID +KVNLV+NLD+P D ETY+HR+GRAGRFG+ G+ ++     GEE+  +  IA+  +  L PLP+
Sbjct:  200 LNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRLNSSDPSLIGLKQYYKVVNSYPLAHKVFEEKTQHLQELFSRIPFNQALVFSNLHSRAQHLADILSSKGFPAECISGNMNQNQRLDAMAKLKHFHCRVLISTDLTSRGIDAEKVNLVVNLDVPLDWETYMHRIGRAGRFGTLGLTVTYC-CRGEEENMMMRIAQKCNINLLPLPD 438
The following BLAST results are available for this feature:
BLAST of TCONS_00027893 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DDX206.100e-8154.58Probable ATP-dependent RNA helicase DDX20 OS=Homo ... [more]
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