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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027881 ID=TCONS_00027881|Name=TCONS_00027881|organism=Clytia hemisphaerica|type=transcript|length=974bp
AGGATTACAGAAACCCGAACGATCTGAAAGAGTTATTCCGACGCTGGATA
TTCTTTTGTTCGCATCGCTTGAGAGAAATTGTCCATCTCAGCCAAAGAAA
GACCTTTTGAAATTTGGTTTGtctattcgtcacttgctggtcaTGCTCCC
TCGCATCCCCATTACGTCATCTTTCAACATCGTGACCACTCAGAATAAAA
GCATAATTTATGTTCAATCATATAATTGGAAACGCCACTTTGACATCTTT
TTGCCACTCATGTTTTGATTGACGTTTGGCGCGTCAACGAGATTGCTTTT
GTTATTGTTTGAAGATTGTCTATTGACGTCAGCATGTGATGGTATGTTTG
TTGAATAAATTATCCTGCAAAGTATCCACCACTTTCATATATAAGCAAGC
AATGCACACAGACACATCTCGTTATTTAGTAAACTCTTCACACCATATCA
ACACGGAGCAAAATGCATGACATCTATGGTTACGAATCGTGCACGGATGA
ACTGCTTCATCCACAAATCGTCACCCCTTTACCATTGAGTGTTCATAAGA
ATGCGGGCGCTGAACTTCATCTCCTATGTCTGTTGACTGGTTACCCTCCC
ATGGAAATCGAATGGTATCTGGCAGGGGAAAAATTGGACACTCTTGATGA
GAGAATTACTTTGACTAACAATAAACGAGAATTGGTTGTTAAAGGTTTAC
GGAAAGAAGATTGTGGCCCCATCATGTTTCGTGCTGTCAATAAATACGGT
GAAGTAACCAGCTCTTGTTTACTTCAAGTCAATGCTTCTTCAGTCAGCGC
ACGTACCAGTTTCAAGAAAAGAAGTTACAAATTGTTATCTACACCTTcca
tgaaaaataaattgaacaaAGTATTCggcaaaacttaaaatacacgtttt
tttttataagaacgtcaaaaattttcgaagccttcggatgttcttagttt
tttggatttgaagcctaaaaatgt Run BLAST on NCBI transcript from alignment at sc0000649:193097..194599+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027881 ID=TCONS_00027881|Name=TCONS_00027881|organism=Clytia hemisphaerica|type=transcript|length=1503bp|location=Sequence derived from alignment at sc0000649:193097..194599+ (Clytia hemisphaerica)
AGGATTACAGAAACCCGAACGATCTGAAAGAGTTATTCCGACGCTGGATA
TTCTTTTGTTCGCATCGCTTGGTGAGACTAATTGATTACTTACAAAGACA
AACTGTCCCTACCGCATGGGAAATGAACTCAAACTATGAGCCATATCATA
TTAATCGATATTAATCTACCAATGATCCCTCCTTTATCATCATGGCGTCT
TCAGTTGGTCTAACTTTAGATTATTACATCAAGTTTCAAAGCCAAGGTTT
GATGTTCTATTACTGCTATTCACTCATTTTTAGCTGATGTAGTTTTCGGG
GAATTACATTCaacaaattttccttaaaatccTGATAAGAAATTGTCATC
GTATGTCATAGCTCAAAACTTACATGAATTATTTGACCCTTTTTCACTCA
TCATTATAGGTATTTTCCTTATCTCATTAAGATAATATTATTTTTCAGAG
AGAAATTGTCCATCTCAGCCAAAGAAAGACCTTTTGAAATTTGGTTTGtc
tattcgtcacttgctggtcaTGCTCCCTCGCATCCCCATTACGTCATCTT
TCAACATCGTGACCACTCAGAATAAAAGCATAATTTATGTTCAATCATAT
AATTGGAAACGCCACTTTGACATCTTTTTGCCACTCATGTTTTGATTGAC
GTTTGGCGCGTCAACGAGATTGCTTTTGTTATTGTTTGAAGATTGTCTAT
TGACGTCAGCATGTGATGGTATGTTTGTTGAATAAATTATCCTGCAAAGT
ATCCACCACTTTCATATATAAGCAAGCAATGCACACAGACACATCTCGTT
ATTTAGTAAACTCTTCACACCATATCAACACGGAGCAAAATGCATGGTGA
GTAACATGATTTTCATTAATATAAAGGTTGGATCCTACTCGAACCTTCGT
CTCAAATTGACCACTTGATAACTGTGACCACTGACTTTGAGTCATCCTAC
CATCATATAGTATTCTAATAATAGATtactttgatctttctttttcagAC
ATCTATGGTTACGAATCGTGCACGGATGAACTGCTTCATCCACAAATCGT
CACCCCTTTACCATTGAGTGTTCATAAGAATGCGGGCGCTGAACTTCATC
TCCTATGTCTGTTGACTGGTTACCCTCCCATGGAAATCGAATGGTATCTG
GCAGGGGAAAAATTGGACACTCTTGATGAGAGAATTACTTTGACTAACAA
TAAACGAGAATTGGTTGTTAAAGGTTTACGGAAAGAAGATTGTGGCCCCA
TCATGTTTCGTGCTGTCAATAAATACGGTGAAGTAACCAGCTCTTGTTTA
CTTCAAGTCAATGCTTCTTCAGTCAGCGCACGTACCAGTTTCAAGAAAAG
AAGTTACAAATTGTTATCTACACCTTccatgaaaaataaattgaacaaAG
TATTCggcaaaacttaaaatacacgtttttttttataagaacgtcaaaaa
ttttcgaagccttcggatgttcttagttttttggatttgaagcctaaaaa
tgt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027881-exon-sc0000649-1491911889:193097..193167 | TCONS_00027881-exon-sc0000649-1491911889:193097..193167 | Clytia hemisphaerica | exon |
| TCONS_00027881-exon-sc0000649-1510915933:193097..193167 | TCONS_00027881-exon-sc0000649-1510915933:193097..193167 | Clytia hemisphaerica | exon |
| TCONS_00027881-exon-sc0000649-1575043694:193097..193167 | TCONS_00027881-exon-sc0000649-1575043694:193097..193167 | Clytia hemisphaerica | exon |
| TCONS_00027881-exon-sc0000649-1491911889:193545..193942 | TCONS_00027881-exon-sc0000649-1491911889:193545..193942 | Clytia hemisphaerica | exon |
| TCONS_00027881-exon-sc0000649-1510915933:193545..193942 | TCONS_00027881-exon-sc0000649-1510915933:193545..193942 | Clytia hemisphaerica | exon |
| TCONS_00027881-exon-sc0000649-1575043694:193545..193942 | TCONS_00027881-exon-sc0000649-1575043694:193545..193942 | Clytia hemisphaerica | exon |
| TCONS_00027881-exon-sc0000649-1491911889:194095..194599 | TCONS_00027881-exon-sc0000649-1491911889:194095..194599 | Clytia hemisphaerica | exon |
| TCONS_00027881-exon-sc0000649-1510915933:194095..194599 | TCONS_00027881-exon-sc0000649-1510915933:194095..194599 | Clytia hemisphaerica | exon |
| TCONS_00027881-exon-sc0000649-1575043694:194095..194599 | TCONS_00027881-exon-sc0000649-1575043694:194095..194599 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000649 | supercontig | sc0000649:193097..194599 + |
Blast
The following BLAST results are available for this feature:
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