TCONS_00027875 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027875
Unique NameTCONS_00027875
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1575

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027875 ID=TCONS_00027875|Name=TCONS_00027875|organism=Clytia hemisphaerica|type=transcript|length=1575bp
GCTGCAAAAAAGATAAAGTAGATAAGCGACCGCACGCTTGAAACGTTCAA
ATCATAAAGAGAATAGTTGGAAATTCAGTTTCCATACTAGAAAAACATTC
GATAGAAAGCACATGGCATTTTACAGGTTGTGTAGAAAAACTAAACATAT
TTGTAATATTGCCACAATGGAAACAAGGTCAAAGTATTTTCAACAGAAGT
CTGATTTCACAACAAACACCGCCGCTACAAAACGACcgaaaaagaaaact
ttgaaaatggaatatgacAATCGAACAGAGATCAAGCAGGAAGTAGCCAC
GccttcaaaacaaatcaaaattgagCCAAAAGATGAGGATGTGGAAGGTG
GGGATTTATGGTACCCAGACTACTGGCGTTTGCAGTTGAATAACATCCAG
GCAATGAGAGAAGATCGAAGTGCAGTTGTTGATTCGCAAGGTTGTGAAAG
GACTGCAGATAAAAACGAAACGCCAGAGATTCAACGATTCCAAACACTGG
TTTCCTTAATGTTGTCAAGTCAAACGAAGGATCAAGTCACGTTTGCTGCA
ATGGGGAGGCTGAAAGAGTACGGTTGCACACCACAAAAACTCATGAATTC
TACACAAGAAAAAATTGGCCGGCTTATTTACCCTGTTGGCTTTTGGAAGa
ggAAATCCAAGTATTTACAAGAAACAGCCACAATTTGTAACAATGAGTTC
TCTGGCGATATTccaaattctatcaaaacttTGACATCTTTACCTGGTGT
TGGACCAAAAATGGCGTATATTTGCATGACGGCGGCATGGGGCCAAGTTG
ATGGAATCGGTGTTGATACACACGTTCATAGGATCTGCAACAGATTGCAA
TGGGTTCAAAAGCCGACCAAAACTCCCGAACAAACACGTAAAGCGCTAGA
AGCATGGTTACCAAGggaTGAATGGAAGGACATCAACATATTACTGGTTG
GTTTTGGTCAACAAACCTGTCTACCTGTGCACCCAAGGTGTGTTGGTTGT
TTGAATAAAGATATTTGTCCTGCATCAACCGCTCATGTCGAAATGAAAAC
TCGAAACCCAAAACCTAAAATCAAGAAAGAAACGAAATAATACTCGACAA
TGGAGCGTTTTCTACCACACAAAGATGAGCCTACAAGATAATGCAGTATC
ACTTTATAATTTAGCGTACATTTTGTAAATagtgtaaataaataaaaaag
aaagatcaaaacTTAACACGGTTGAATTAAAACCTTTCATAGACTTCATA
TTGTAGTAATAATACAAAATTTGTAATAACGCTGACTTGTCATTGCGACC
ACAGACCGTGTACTCTCAACATTGTTCATGTTTCAATTACACTGATTTTC
CGATTTTACTGCTAGGTGCATTGCCATCTTTTTTATCCAGTTCAGGTTCC
TCGtggaatttcttttgttttttatcaaaaagaaagTTACTTTCAATGGT
TCTCTCGTTTCACGTTTAGGCTCTAAAACATCGAACCCCAGTAAACATCC
AATAAGAAGAAAGCGATCATTACATATAGCacagtcaggaactattgcaa
attaggctatgttcgccgattctgg
Run BLAST on NCBI

protein sequence of TCONS_00027875-protein

>TCONS_00027875-protein ID=TCONS_00027875-protein|Name=TCONS_00027875-protein|organism=Clytia hemisphaerica|type=polypeptide|length=325bp
MAFYRLCRKTKHICNIATMETRSKYFQQKSDFTTNTAATKRPKKKTLKME
YDNRTEIKQEVATPSKQIKIEPKDEDVEGGDLWYPDYWRLQLNNIQAMRE
DRSAVVDSQGCERTADKNETPEIQRFQTLVSLMLSSQTKDQVTFAAMGRL
KEYGCTPQKLMNSTQEKIGRLIYPVGFWKRKSKYLQETATICNNEFSGDI
PNSIKTLTSLPGVGPKMAYICMTAAWGQVDGIGVDTHVHRICNRLQWVQK
PTKTPEQTRKALEAWLPRDEWKDINILLVGFGQQTCLPVHPRCVGCLNKD
ICPASTAHVEMKTRNPKPKIKKETK
Run BLAST on NCBI

transcript from alignment at sc0000649:169522..176426+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027875 ID=TCONS_00027875|Name=TCONS_00027875|organism=Clytia hemisphaerica|type=transcript|length=6905bp|location=Sequence derived from alignment at sc0000649:169522..176426+ (Clytia hemisphaerica)
GCTGCAAAAAAGATAAAGTAGATAAGCGACCGCACGCTTGAAACGTTCAA
ATCATAAAGAGAATAGTTGGAAATTCAGTTTCCATACTAGAAAAACATTC
GATAGAAAGCACATGGCATTTTACAGGTTGTGTAGAAAAACTAAACATAT
TTGTAATGTAAGTTAATTTTACAAGTTTCCTTAAAATATATTACTATGGa
aatattaaaatgttttaCTTGATCTTGTTTCTCTTTCtagggaaacagta
aagaaaagtGTCCTGTAGATAATGCCactttttggtaaaaatataTACAG
CTTAAGAACTTTAGCTAGTCGCATTTAGCCCCTGTCCTAATCTCAGTATA
CTAAGACATAACATCTTTTTTACATTCAATTCATGTACAAAAGTTTCTCA
GAGACTCCTCAACAATGGAAAATACAAGATTGGGGATTTTGTATTAAAAC
GCTCCCAAAGTGAAAGTAGATATATTTCATTAAGTTGAActtgaagttgg
tttgatattctacgtttgacatttgatattcgtttgatattcatTCTGTC
GTTTGACATTCTTTCTgtcgtttgatattctcaaatttggtTTTTCAAGT
TCATGTATTACTTTTGggatacacctttcccgtaatttgTAAAACTAGTG
GTGAGTCgtgcgcattattttgatgctctccattGTTGGTCTCTGTatgt
aaacaaacccgtttttgtcTGCGTTTCctttagggaaagttggtttttag
agcttttcttaagttctgtcaaaACCccttcaaattttagtatgttcaat
ctaattcatgatattataccaccctgaaaatctcttgccaaaagaagatc
gctatcaaaagttaagAAGCTGAAAACCCCTTGCAGGCAAAAACGTGTTC
GTTTACCTCTTAAACagttttatacacaacggtggagtgCACATTTTCCC
GTGCAATTTTTGAGAAGTTTGAATCacaggaaaggtgtattggaaactat
tcatgatatgcaccacttcAATGACTTCACAAAgctatgcaacttttctg
tttttgttccaccaaatacgtcactttttctttgtttaagtgacgtattg
ggtggaaattttctctgaaaagttatcagaagactctccagtggtgcata
tcatgaattggaagtcaatagagtttattctcaagggtgtctgtgccGAA
TTTCACTGCTCTGTCGCAGTGTCCTCCCNCtcaattaataaattattctc
ggacacgtccggtaaaaattttcaaacacgccgagtaaatttttctgact
cTCTAAACTATAAAGATTTCTAAATAAGTACTCAATATTTGTCCCTCGAA
TTTTCACTGATTCACTTTTTTTNtctgtttttgttccaccaaatacgtca
ctttttctttgtttaagtgacgtattgggtggaaattttctctgaaaagt
tatcagaagactctccagtggtgcatatcatgaattggaagtcaatagag
tttattctcaagggtgtctgtgccGAATTTCACTGCTCTGTCGCAGTGTC
CTCctagacaggcagctgacgacATCTAAAACCTGGACGACTTTGGGACA
AACGTcgagttgatttttcttgttcccatatatctactgatcctaaaaat
tttactcggCGTCCGAAAATTTATNGGAAACTATTGGAAatcaatagagt
ttattctcaagggtgtctgtgccaaatttcaccACTCTCCGTCTCAGTGC
GCTCCCTCTTGGGTGTTCTTggcacagacacccttgagaataaactctat
tgacttccaatagtttccaattccaaagatgacTGCTCTCCCCCACAGTA
GcccattttgtcattttggcctAACTGAGGTTTgtcggttaccaattttt
agagggagcgcACTGCGACGAGGAGCGGTAAAATTTGGCACAGACACCTT
TGAGAATAAGCTCTACTTTGACTTCTAATACAGAGTTTACAATTTCAATT
AAAGTAATCACAGGAACCCGtcttttagccgttttttggcccaaatttgc
cccccaatttttttttctcgaaaatcgggctccgtcacattttggcaact
accgttttgcacctttgtaccaaaaatctaaagattcctatgattcaata
ctgagaaaagttggtaacagacgaacgaacggacggacggacggactaac
acaggttaatttataggacctccaccccaccggggtaggtccaaaaaatt
taaattctgaaGCTCACAATTTCTCGAGAAACCTGTATACTTtattttgg
tgcacccggtatatttcCGCAATTTCCACATACTGGAATCTTTCGCGTGT
ACTAGATTTCGCGATTTGCgttattcaatattttcaaagaaaaaggttaa
agcaagaaaaagattaattttgcttgaaacacaacatAGTAGGTGCAAGA
ATAGTATCAAAAGTGTATCAAAATATCACTGATCCCTTAAAAAATTCATT
CTcctttctatttttgaaaaacttatagtactaaattttgcgaaattttg
cctaaaaactcGTGAACTTTAAGTACAAGCAAAAATTTAGTACCCGCGAA
AATATTGAAAGGTAAGGTATGTTCCAATATATATCTTTATTCTCAAGCAG
TGCGCATGCGACTTTATTGGCTCTCCAGTAAAGTCCATTTGTTGCAGCTT
TTGCTAAACCATGAAAGTTGATTATAAATGGGGAACTAAGTTTTAATGAA
ATCACGTCCATTTACGTCCATTGTTGATTTGACAATCTGGCCATTGATTT
ACGACTGAACTGTTCACCAAGTCTATTTAATACAAGAATTATTTTCTCCC
ATGGATAAATCGATCTGGGAGGTTGTTTGATTGATGCGACAAATTGCAAA
GTATGGTGCTGGGTGTAATACTTGGATGTGATCACCAATCTCAGGAGGGT
TTCTGGTGCAAGGTACCAGGATCTTGGGGTGGTTATCATTATTGCTTGTT
AAGAGTGCGAGAAGAAGACCAAGCAAATATCTACTTCTTTAAAGTGTCAA
TCTTTTCCATGCTTCATATTTCCTTCTCCCGTTAAGAAAGGGATTAGTTT
TAGGCGTGAAAGGTGTGAAACTATCGATGattgttttatataattttata
ataatGTTGTAGATTGCCACAATGGAAACAAGGTCAAAGTATTTTCAACA
GAAGTCTGATTTCACAACAAACACCGCCGCTACAAAACGACcgaaaaaga
aaactttgaaaatggaatatgacAATCGAACAGAGATCAAGCAGGAAGTA
GCCACGccttcaaaacaaatcaaaattgagCCAAAAGATGAGGATGTGGA
AGGTATCTCTATTCTTCATTATAAGTTTCTTCCTTTAATTTCATCTACAT
ACCACCTTGCTTTTGTTCCCCCACTTTTTAAATAATCTAGGTTTCGAGCT
ggaataatttttatttatcaaaTCAAAACGCAACAGCATGAAAACGGATT
TTCTCAGTAACTGTATGATATTAGTTTAGGAGACAGTAGCATAATCAAAT
ACTCCTCAGTTTGAGAAATGTCCTTTTATCGTTTTTATCGTAAGGTGGGG
ATTTATGGTACCCAGACTACTGGCGTTTGCAGTTGAATAACATCCAGGCA
ATGAGAGAAGATCGAAGTGCAGTTGTTGATTCGCAAGGTTGTGAAAGGAC
TGCAGATAAAAACGAAACGCCAGAGGTATATTTTAACCTGTAATATAACG
TGAGGCTTCAAAATACTGAAGCATTCTTCTAGccctcatttttggaccta
ccccggtggaggtcctataaattaaccgttgtatgttcgtctgttcgtcc
gttcgttccttagttcgttagttaccagcttttctcgagaattgctcatt
agttttttctgattttttgcacaaagatgcataactataaaccctcgaat
gtgacggagcccgattttcgaaaaaaaaattttgggggcaaatttgggcc
aaaaaacggctaaaaaacgggttttttggacttcatgaaaaatttgatca
ttaattttttctgattttttgcatgaaagtagggtaccatcataggtaaa
agatggttcaagcagatttttgcaaaaaaaatttgtttggctcaaaaaac
gcatgtttatctataagaatcactattaataagcatacatcaatgttctt
agccaaattactcaatttatttatgagatagatgtttttttttgctcatt
agggcttacttttgaagaatatgtgtgtttagacatgaaattttggctgc
ttggcgtgtttttatagaaaaactggccgaattcgatatttttttataag
cacattatcaattacttaggtgttagcttttctcgaggttggcgctttca
ttctttatgattttttgcacaaagatgcataactataccccctcgaatgt
gacagagcccgattttcgaaaagaaaatttttttggggcaaatttgggcc
gaaaaaaatatatttggccaaatttgggccaaaaagacggctaaaaaacg
ggtttttaggactttgtgaaaaattggatcattaatcttttctaattttt
agaatgaaagtaggtaaaagatgactcaagcagacttttgtaaaaaacga
atttttcagctcaaaaaacgcatctttatctataagaatcactattaata
agcatacatcaatgttcttagccaaattactcaatattttgatgagatcg
atgtttttttgctcacgaagtcttgagtatgaaagaatatttaaagagca
tgaaattttggtttttaaacggtttttataagaaacaaacgactaatttt
aatagatcgtcactatttgtgttctgaatgattgtttaatggtcacgctc
acgtatatcaattatatatgtgttaaatgcgtaaccaggtaggtccataa
aagtatcacttgtttctaaAAGAAACGGTAAACTAAAACCATCGTGAATG
ATTGTTTCGAGAAAATGGTATGACTTTTCTTCATAATAGATTCAACGATT
CCAAACACTGGTTTCCTTAATGTTGTCAAGTCAAACGAAGGATCAAGTCA
CGTTTGCTGCAATGGGGAGGCTGAAAGAGTACGGTTGCACACCACAAAAA
CTCATGAATTCTACACAAGAAAAAATTGGCCGGCTTATTTACCCTGTTGG
CTTTTGGAAGGTATTCTTTTATATGTAAAGGAGAAAATGAACTTAGACAT
AAAATACTCCAATTCAGTGCTTTATATCATTGACTAGGTAACAAAACCGT
TTCAAGAATAGGTTATGAAGTCCTAAAAACCTTAATTTTACCCTAAAAGT
AAGAATTGGATTCAGGatataagaacaaattgagGATTAAAGTGCCAAAA
CAAAGAACaacctcaacaaaaatttattttttattaatttagatttgaat
tttattatttatttacttgtctttttcaaatttagaggAAATCCAAGTAT
TTACAAGAAACAGCCACAATTTGTAACAATGAGTTCTCTGGCGATATTcc
aaattctatcaaaacttTGACATCTTTACCTGGTGTTGGACCAAAAATGG
CGTATATTTGCATGACGGCGGCATGGGGCCAAGTTGATGGAATCGGTGTT
GATACACACGTTCATAGGATCTGCAACAGATTGCAATGGGTTCAAAAGCC
GACCAAAACTCCCGAACAAACACGTAAAGCGCTAGAAGCATGGTTACCAA
GGTTTGTATGCAAATACTTTTCATGTggtttatctcaaaatcattcaAAA
TCGTCCTTTTTTCTCACTTCAAACTCTGGTCGAAATTTGAAGTAATTCCT
AATATGATATATGAATGTGCCGAATTAGGGGTTCAAtgtttgaaaatcaa
ttttaaatttctatCAGATTCAGCTGTTGACCCAATGACAAAAAGGGTTT
GTTAAATAGTTTTTGACCATCTGCACCCACGTTACGGCCCTTTTTACCCA
AAAATGCtcatttttagcaattttttcatcgcgtcaaaactttttttatt
tcatgatAATTTTTTAGAGATTTAGAAAGTACTGCTacctgaaataaata
aaaagcttATGTTGTGCCGTTACCTAGATGTTGATTAAGATATTGTGGTT
TAAAGTCTCAAATAATTGGTATGGTCCATAAATTGTTCTAATTCTAAACT
CATGTAGCATAACTAACTAATAACgaacaacttttttgttttcagggaTG
AATGGAAGGACATCAACATATTACTGGTTGGTTTTGGTCAACAAACCTGT
CTACCTGTGCACCCAAGGTGTGTTGGTTGTTTGAATAAAGATATTTGTCC
TGCATCAACCGCTCATGTCGAAATGAAAACTCGAAACCCAAAACCTAAAA
TCAAGAAAGAAACGAAATAATACTCGACAATGGAGCGTTTTCTACCACAC
AAAGATGAGCCTACAAGATAATGCAGTATCACTTTATAATTTAGCGTACA
TTTTGTAAATagtgtaaataaataaaaaagaaagatcaaaacTTAACACG
GTTGAATTAAAACCTTTCATAGACTTCATATTGTAGTAATAATACAAAAT
TTGTAATAACGCTGACTTGTCATTGCGACCACAGACCGTGTACTCTCAAC
ATTGTTCATGTTTCAATTACACTGATTTTCCGATTTTACTGCTAGGTGCA
TTGCCATCTTTTTTATCCAGTTCAGGTTCCTCGtggaatttcttttgttt
tttatcaaaaagaaagTTACTTTCAATGGTTCTCTCGTTTCACGTTTAGG
CTCTAAAACATCGAACCCCAGTAAACATCCAATAAGAAGAAAGCGATCAT
TACATATAGCacagtcaggaactattgcaaattaggctatgttcgccgat
tctgg

Coding sequence (CDS) from alignment at sc0000649:169522..176426+

>TCONS_00027875 ID=TCONS_00027875|Name=TCONS_00027875|organism=Clytia hemisphaerica|type=CDS|length=5868bp|location=Sequence derived from alignment at sc0000649:169522..176426+ (Clytia hemisphaerica)
ATGGCATTTTACAGGTTGTGTAGAAAAACTAAACATATTTGTAATATTGC
CACAATGGAAACAAGGTCAAAGTATTTTCAACAGAAGTCTGATTTCACAA
CAAACACCGCCGCTACAAAACGACcgaaaaagaaaactttgaaaatggaa
tatgacAATCGAACAGAGATCAAGCAGGAAGTAGCCACGccttcaaaaca
aatcaaaattgagCCAAAAGATGAGGATGTGGAAGGTGGGGATTTATGGT
ACCCAGACTACTGGCGTTTGCAGTTGAATAACATCCAGGCAATGAGAGAA
GATCGAAGTGCAGTTGTTGATTCGCAAGGTTGTGAAAGGACTGCAGATAA
AAACGAAACGCCAGAGATTCAACGATTCCAAACACTGGTTTCCTTAATGT
TGTCAAGTCAAACGAAGGATCAAGTCACGTTTGCTGCAATGGGGAGGCTG
AAAGAGTACGGTTGCACACCACAAAAACTCATGAATTCTACACAAGAAAA
AATTGGCCGGCTTATTTACCCTGTTGGCTTTTGGAAGaggAAATCCAAGT
ATTTACAAGAAACAGCCACAATTTGTAACAATGAGTTCTCTGGCGATATT
ccaaattctatcaaaacttTGACATCTTTACCTGGTGTTGGACCAAAAAT
GGCGTATATTTGCATGACGGCGGCATGGGGCCAAGTTGATGGAATCGGTG
TTGATACACACGTTCATAGGATCTGCAACAGATTGCAATGGGTTCAAAAG
CCGACCAAAACTCCCGAACAAACACGTAAAGCGCTAGAAGCATGGTTACC
AAGggaTGAATGGAAGGACATCAACATATTACTGGTTGGTTTTGGTCAAC
AAACCTGTCTACCTGTGCACCCAAGGTGTGTTGGTTGTTTGAATAAAGAT
ATTTGTCCTGCATCAACCGCTCATGTCGAAATGAAAACTCGAAACCCAAA
ACCTAAAATCAAGAAAGAAACGAAATAAATGGCATTTTACAGGTTGTGTA
GAAAAACTAAACATATTTGTAATATTGCCACAATGGAAACAAGGTCAAAG
TATTTTCAACAGAAGTCTGATTTCACAACAAACACCGCCGCTACAAAACG
ACcgaaaaagaaaactttgaaaatggaatatgacAATCGAACAGAGATCA
AGCAGGAAGTAGCCACGccttcaaaacaaatcaaaattgagCCAAAAGAT
GAGGATGTGGAAGGTGGGGATTTATGGTACCCAGACTACTGGCGTTTGCA
GTTGAATAACATCCAGGCAATGAGAGAAGATCGAAGTGCAGTTGTTGATT
CGCAAGGTTGTGAAAGGACTGCAGATAAAAACGAAACGCCAGAGATTCAA
CGATTCCAAACACTGGTTTCCTTAATGTTGTCAAGTCAAACGAAGGATCA
AGTCACGTTTGCTGCAATGGGGAGGCTGAAAGAGTACGGTTGCACACCAC
AAAAACTCATGAATTCTACACAAGAAAAAATTGGCCGGCTTATTTACCCT
GTTGGCTTTTGGAAGaggAAATCCAAGTATTTACAAGAAACAGCCACAAT
TTGTAACAATGAGTTCTCTGGCGATATTccaaattctatcaaaacttTGA
CATCTTTACCTGGTGTTGGACCAAAAATGGCGTATATTTGCATGACGGCG
GCATGGGGCCAAGTTGATGGAATCGGTGTTGATACACACGTTCATAGGAT
CTGCAACAGATTGCAATGGGTTCAAAAGCCGACCAAAACTCCCGAACAAA
CACGTAAAGCGCTAGAAGCATGGTTACCAAGggaTGAATGGAAGGACATC
AACATATTACTGGTTGGTTTTGGTCAACAAACCTGTCTACCTGTGCACCC
AAGGTGTGTTGGTTGTTTGAATAAAGATATTTGTCCTGCATCAACCGCTC
ATGTCGAAATGAAAACTCGAAACCCAAAACCTAAAATCAAGAAAGAAACG
AAATAAATGGCATTTTACAGGTTGTGTAGAAAAACTAAACATATTTGTAA
TATTGCCACAATGGAAACAAGGTCAAAGTATTTTCAACAGAAGTCTGATT
TCACAACAAACACCGCCGCTACAAAACGACcgaaaaagaaaactttgaaa
atggaatatgacAATCGAACAGAGATCAAGCAGGAAGTAGCCACGccttc
aaaacaaatcaaaattgagCCAAAAGATGAGGATGTGGAAGGTGGGGATT
TATGGTACCCAGACTACTGGCGTTTGCAGTTGAATAACATCCAGGCAATG
AGAGAAGATCGAAGTGCAGTTGTTGATTCGCAAGGTTGTGAAAGGACTGC
AGATAAAAACGAAACGCCAGAGATTCAACGATTCCAAACACTGGTTTCCT
TAATGTTGTCAAGTCAAACGAAGGATCAAGTCACGTTTGCTGCAATGGGG
AGGCTGAAAGAGTACGGTTGCACACCACAAAAACTCATGAATTCTACACA
AGAAAAAATTGGCCGGCTTATTTACCCTGTTGGCTTTTGGAAGaggAAAT
CCAAGTATTTACAAGAAACAGCCACAATTTGTAACAATGAGTTCTCTGGC
GATATTccaaattctatcaaaacttTGACATCTTTACCTGGTGTTGGACC
AAAAATGGCGTATATTTGCATGACGGCGGCATGGGGCCAAGTTGATGGAA
TCGGTGTTGATACACACGTTCATAGGATCTGCAACAGATTGCAATGGGTT
CAAAAGCCGACCAAAACTCCCGAACAAACACGTAAAGCGCTAGAAGCATG
GTTACCAAGggaTGAATGGAAGGACATCAACATATTACTGGTTGGTTTTG
GTCAACAAACCTGTCTACCTGTGCACCCAAGGTGTGTTGGTTGTTTGAAT
AAAGATATTTGTCCTGCATCAACCGCTCATGTCGAAATGAAAACTCGAAA
CCCAAAACCTAAAATCAAGAAAGAAACGAAATAAATGGCATTTTACAGGT
TGTGTAGAAAAACTAAACATATTTGTAATATTGCCACAATGGAAACAAGG
TCAAAGTATTTTCAACAGAAGTCTGATTTCACAACAAACACCGCCGCTAC
AAAACGACcgaaaaagaaaactttgaaaatggaatatgacAATCGAACAG
AGATCAAGCAGGAAGTAGCCACGccttcaaaacaaatcaaaattgagCCA
AAAGATGAGGATGTGGAAGGTGGGGATTTATGGTACCCAGACTACTGGCG
TTTGCAGTTGAATAACATCCAGGCAATGAGAGAAGATCGAAGTGCAGTTG
TTGATTCGCAAGGTTGTGAAAGGACTGCAGATAAAAACGAAACGCCAGAG
ATTCAACGATTCCAAACACTGGTTTCCTTAATGTTGTCAAGTCAAACGAA
GGATCAAGTCACGTTTGCTGCAATGGGGAGGCTGAAAGAGTACGGTTGCA
CACCACAAAAACTCATGAATTCTACACAAGAAAAAATTGGCCGGCTTATT
TACCCTGTTGGCTTTTGGAAGaggAAATCCAAGTATTTACAAGAAACAGC
CACAATTTGTAACAATGAGTTCTCTGGCGATATTccaaattctatcaaaa
cttTGACATCTTTACCTGGTGTTGGACCAAAAATGGCGTATATTTGCATG
ACGGCGGCATGGGGCCAAGTTGATGGAATCGGTGTTGATACACACGTTCA
TAGGATCTGCAACAGATTGCAATGGGTTCAAAAGCCGACCAAAACTCCCG
AACAAACACGTAAAGCGCTAGAAGCATGGTTACCAAGggaTGAATGGAAG
GACATCAACATATTACTGGTTGGTTTTGGTCAACAAACCTGTCTACCTGT
GCACCCAAGGTGTGTTGGTTGTTTGAATAAAGATATTTGTCCTGCATCAA
CCGCTCATGTCGAAATGAAAACTCGAAACCCAAAACCTAAAATCAAGAAA
GAAACGAAATAAATGGCATTTTACAGGTTGTGTAGAAAAACTAAACATAT
TTGTAATATTGCCACAATGGAAACAAGGTCAAAGTATTTTCAACAGAAGT
CTGATTTCACAACAAACACCGCCGCTACAAAACGACcgaaaaagaaaact
ttgaaaatggaatatgacAATCGAACAGAGATCAAGCAGGAAGTAGCCAC
GccttcaaaacaaatcaaaattgagCCAAAAGATGAGGATGTGGAAGGTG
GGGATTTATGGTACCCAGACTACTGGCGTTTGCAGTTGAATAACATCCAG
GCAATGAGAGAAGATCGAAGTGCAGTTGTTGATTCGCAAGGTTGTGAAAG
GACTGCAGATAAAAACGAAACGCCAGAGATTCAACGATTCCAAACACTGG
TTTCCTTAATGTTGTCAAGTCAAACGAAGGATCAAGTCACGTTTGCTGCA
ATGGGGAGGCTGAAAGAGTACGGTTGCACACCACAAAAACTCATGAATTC
TACACAAGAAAAAATTGGCCGGCTTATTTACCCTGTTGGCTTTTGGAAGa
ggAAATCCAAGTATTTACAAGAAACAGCCACAATTTGTAACAATGAGTTC
TCTGGCGATATTccaaattctatcaaaacttTGACATCTTTACCTGGTGT
TGGACCAAAAATGGCGTATATTTGCATGACGGCGGCATGGGGCCAAGTTG
ATGGAATCGGTGTTGATACACACGTTCATAGGATCTGCAACAGATTGCAA
TGGGTTCAAAAGCCGACCAAAACTCCCGAACAAACACGTAAAGCGCTAGA
AGCATGGTTACCAAGggaTGAATGGAAGGACATCAACATATTACTGGTTG
GTTTTGGTCAACAAACCTGTCTACCTGTGCACCCAAGGTGTGTTGGTTGT
TTGAATAAAGATATTTGTCCTGCATCAACCGCTCATGTCGAAATGAAAAC
TCGAAACCCAAAACCTAAAATCAAGAAAGAAACGAAATAAATGGCATTTT
ACAGGTTGTGTAGAAAAACTAAACATATTTGTAATATTGCCACAATGGAA
ACAAGGTCAAAGTATTTTCAACAGAAGTCTGATTTCACAACAAACACCGC
CGCTACAAAACGACcgaaaaagaaaactttgaaaatggaatatgacAATC
GAACAGAGATCAAGCAGGAAGTAGCCACGccttcaaaacaaatcaaaatt
gagCCAAAAGATGAGGATGTGGAAGGTGGGGATTTATGGTACCCAGACTA
CTGGCGTTTGCAGTTGAATAACATCCAGGCAATGAGAGAAGATCGAAGTG
CAGTTGTTGATTCGCAAGGTTGTGAAAGGACTGCAGATAAAAACGAAACG
CCAGAGATTCAACGATTCCAAACACTGGTTTCCTTAATGTTGTCAAGTCA
AACGAAGGATCAAGTCACGTTTGCTGCAATGGGGAGGCTGAAAGAGTACG
GTTGCACACCACAAAAACTCATGAATTCTACACAAGAAAAAATTGGCCGG
CTTATTTACCCTGTTGGCTTTTGGAAGaggAAATCCAAGTATTTACAAGA
AACAGCCACAATTTGTAACAATGAGTTCTCTGGCGATATTccaaattcta
tcaaaacttTGACATCTTTACCTGGTGTTGGACCAAAAATGGCGTATATT
TGCATGACGGCGGCATGGGGCCAAGTTGATGGAATCGGTGTTGATACACA
CGTTCATAGGATCTGCAACAGATTGCAATGGGTTCAAAAGCCGACCAAAA
CTCCCGAACAAACACGTAAAGCGCTAGAAGCATGGTTACCAAGggaTGAA
TGGAAGGACATCAACATATTACTGGTTGGTTTTGGTCAACAAACCTGTCT
ACCTGTGCACCCAAGGTGTGTTGGTTGTTTGAATAAAGATATTTGTCCTG
CATCAACCGCTCATGTCGAAATGAAAACTCGAAACCCAAAACCTAAAATC
AAGAAAGAAACGAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015756XLOC_015756Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027875-proteinTCONS_00027875-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027875-exon-sc0000649-1491911889:169522..169678TCONS_00027875-exon-sc0000649-1491911889:169522..169678Clytia hemisphaericaexon
TCONS_00027875-exon-sc0000649-1510915933:169522..169678TCONS_00027875-exon-sc0000649-1510915933:169522..169678Clytia hemisphaericaexon
TCONS_00027875-exon-sc0000649-1575043694:169522..169678TCONS_00027875-exon-sc0000649-1575043694:169522..169678Clytia hemisphaericaexon
TCONS_00027875-exon-sc0000649-1491911889:172684..172873TCONS_00027875-exon-sc0000649-1491911889:172684..172873Clytia hemisphaericaexon
TCONS_00027875-exon-sc0000649-1510915933:172684..172873TCONS_00027875-exon-sc0000649-1510915933:172684..172873Clytia hemisphaericaexon
TCONS_00027875-exon-sc0000649-1575043694:172684..172873TCONS_00027875-exon-sc0000649-1575043694:172684..172873Clytia hemisphaericaexon
TCONS_00027875-exon-sc0000649-1491911889:173116..173246TCONS_00027875-exon-sc0000649-1491911889:173116..173246Clytia hemisphaericaexon
TCONS_00027875-exon-sc0000649-1510915933:173116..173246TCONS_00027875-exon-sc0000649-1510915933:173116..173246Clytia hemisphaericaexon
TCONS_00027875-exon-sc0000649-1575043694:173116..173246TCONS_00027875-exon-sc0000649-1575043694:173116..173246Clytia hemisphaericaexon
TCONS_00027875-exon-sc0000649-1491911889:174561..174731TCONS_00027875-exon-sc0000649-1491911889:174561..174731Clytia hemisphaericaexon
TCONS_00027875-exon-sc0000649-1510915933:174561..174731TCONS_00027875-exon-sc0000649-1510915933:174561..174731Clytia hemisphaericaexon
TCONS_00027875-exon-sc0000649-1575043694:174561..174731TCONS_00027875-exon-sc0000649-1575043694:174561..174731Clytia hemisphaericaexon
TCONS_00027875-exon-sc0000649-1491911889:175007..175272TCONS_00027875-exon-sc0000649-1491911889:175007..175272Clytia hemisphaericaexon
TCONS_00027875-exon-sc0000649-1510915933:175007..175272TCONS_00027875-exon-sc0000649-1510915933:175007..175272Clytia hemisphaericaexon
TCONS_00027875-exon-sc0000649-1575043694:175007..175272TCONS_00027875-exon-sc0000649-1575043694:175007..175272Clytia hemisphaericaexon
TCONS_00027875-exon-sc0000649-1491911889:175767..176426TCONS_00027875-exon-sc0000649-1491911889:175767..176426Clytia hemisphaericaexon
TCONS_00027875-exon-sc0000649-1510915933:175767..176426TCONS_00027875-exon-sc0000649-1510915933:175767..176426Clytia hemisphaericaexon
TCONS_00027875-exon-sc0000649-1575043694:175767..176426TCONS_00027875-exon-sc0000649-1575043694:175767..176426Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000649supercontigsc0000649:169522..176426 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.233	8.71241	5.16753	5.78277	8.0907	6.17197	5.97701	5.50182	4.18024	3.41579	4.63111	4.23781	3.38055	2.55288	4.14412	3.87902	4.45383	3.53715	1.49088	1.35786	5.50062	5.2178	14.8895	11.073	9.36935	10.3986	1.50296	1.36825	7.26438	8.39983
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003265HhH-GPD_domain
IPR023170HTH_base_excis_C
IPR000445HhH_motif
IPR004036Endonuclease-III-like_CS2
IPR030841NTH1
IPR011257DNA_glycosylase
Vocabulary: Biological Process
TermDefinition
GO:0006284base-excision repair
GO:0006285base-excision repair, AP site formation
GO:0006281DNA repair
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003906DNA-(apurinic or apyrimidinic site) lyase activity
GO:0019104DNA N-glycosylase activity
GO:0003824catalytic activity
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006284 base-excision repair
biological_process GO:0006285 base-excision repair, AP site formation
biological_process GO:0006281 DNA repair
cellular_component GO:0005634 nucleus
molecular_function GO:0003824 catalytic activity
molecular_function GO:0003906 DNA-(apurinic or apyrimidinic site) lyase activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0019104 DNA N-glycosylase activity
Blast
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BLAST of TCONS_00027875 vs. Swiss-Prot (Human)
Match: NTH (Endonuclease III-like protein 1 OS=Homo sapiens GN=NTHL1 PE=1 SV=2)

HSP 1 Score: 289.271 bits (739), Expect = 1.051e-92
Identity = 138/268 (51.49%), Postives = 178/268 (66.42%), Query Frame = 2 
Query:  227 TKRPKK-KTLKMEYDNRTEIKQEVATPSKQIKIEPKDEDVEGGDLWYPDYWRLQLNNIQAMREDRSAVVDSQGCERTADKNETPEIQRFQTLVSLMLSSQTKDQVTFAAMGRLKEYGCTPQKLMNSTQEKIGRLIYPVGFWKRKSKYLQETATICNNEFSGDIPNSIKTLTSLPGVGPKMAYICMTAAWGQVDGIGVDTHVHRICNRLQWVQKPTKTPEQTRKALEAWLPRDEWKDINILLVGFGQQTCLPVHPRCVGCLNKDICPAS 1027
             KRP+K + L++ Y+     K E A P K               +W P  W+ QL NI+AMR  + A VD  G E   D +  P+++R+Q L+SLMLSSQTKDQVT  AM RL+  G T   ++ +    +G+LIYPVGFW+ K KY+++T+ I    + GDIP S+  L +LPGVGPKMA++ M  AWG V GI VDTHVHRI NRL+W +K TK+PE+TR ALE WLPR+ W +IN LLVGFGQQTCLPVHPRC  CLN+ +CPA+
Sbjct:   55 VKRPRKAQRLRVAYEGSDSEKGEGAEPLKV-------------PVWEPQDWQQQLVNIRAMRNKKDAPVDHLGTEHCYDSSAPPKVRRYQVLLSLMLSSQTKDQVTAGAMQRLRARGLTVDSILQTDDATLGKLIYPVGFWRSKVKYIKQTSAILQQHYGGDIPASVAELVALPGVGPKMAHLAMAVAWGTVSGIAVDTHVHRIANRLRWTKKATKSPEETRAALEEWLPRELWHEINGLLVGFGQQTCLPVHPRCHACLNQALCPAA 309
The following BLAST results are available for this feature:
BLAST of TCONS_00027875 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NTH1.051e-9251.49Endonuclease III-like protein 1 OS=Homo sapiens GN... [more]
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