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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027862 ID=TCONS_00027862|Name=TCONS_00027862|organism=Clytia hemisphaerica|type=transcript|length=1837bpRun BLAST on NCBI transcript from alignment at sc0000649:24831..48029+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00027862 ID=TCONS_00027862|Name=TCONS_00027862|organism=Clytia hemisphaerica|type=transcript|length=23199bp|location=Sequence derived from alignment at sc0000649:24831..48029+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
No biomaterial libraries express this feature.
Blast
BLAST of TCONS_00027862 vs. Swiss-Prot (Human)
Match: RAGP1 (Ran GTPase-activating protein 1 OS=Homo sapiens GN=RANGAP1 PE=1 SV=1) HSP 1 Score: 180.259 bits (456), Expect = 9.960e-49 Identity = 99/196 (50.51%), Postives = 134/196 (68.37%), Query Frame = 1
Query: 511 ILSEAFIDCHKSSSAAGTPFALKVFISGRNRLENEGAKALSKAFKLLGSLEEITMPQNGIRPEGVVLLADAFKKNSHLKCININDNTCTETGAKALADCIHHLENLETLNIGDCLVRDRGAEILAPSL-AATKSLKTVILSFNEIRRDGAMAVVNGMKNKTSLELLNLDGNQLGE--CIEEIQDRMSEFNMINSLG 1089
IL+ A +CH+ SSA G P ALKVF++GRNRLEN+GA AL++AF+++G+LEE+ MPQNGI G+ LA AF N L+ IN+NDNT TE GA A+A+ + L +E +N GDCLVR +GA +A ++ LK + LSF EI+RD A+AV M +K LE L+L+GN LGE C E++Q+ + FNM L
Sbjct: 161 ILAAALTECHRKSSAQGKPLALKVFVAGRNRLENDGATALAEAFRVIGTLEEVHMPQNGINHPGITALAQAFAVNPLLRVINLNDNTFTEKGAVAMAETLKTLRQVEVINFGDCLVRSKGAVAIADAIRGGLPKLKELNLSFCEIKRDAALAVAEAMADKAELEKLDLNGNTLGEEGC-EQLQEVLEGFNMAKVLA 355 HSP 2 Score: 94.7449 bits (234), Expect = 2.499e-20 Identity = 46/128 (35.94%), Postives = 75/128 (58.59%), Query Frame = 1
Query: 1360 QQGVLPSTDKTARHFVHICGCMENDES---AIKEISECVLGEAFKDSRVEPQQLVTSLLVHMGLLKAETKVEKVEGLKGPLSGLENVILQEYFPRAITQYFIAFLLKPNSLLDSCHDERHRVLQKLYQ 1734
QQ +K F+ + +++ + A+++ + ++ +AF S +T LLVHMGLLK+E KV+ + L GPL L +++ Q+YFP+A+ +AF+ KPNS L+SC RH +LQ LY+
Sbjct: 459 QQTDTSDPEKVVSAFLKVSSVFKDEATVRMAVQDAVDALMQKAFNSSSFNSNTFLTRLLVHMGLLKSEDKVKAIANLYGPLMALNHMVQQDYFPKALAPLLLAFVTKPNSALESCSFARHSLLQTLYK 586 The following BLAST results are available for this feature:
BLAST of TCONS_00027862 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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