TCONS_00027861 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00027861
Unique Name	TCONS_00027861
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1890

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000649:24831..28318+

transcript sequence

>TCONS_00027861 ID=TCONS_00027861|Name=TCONS_00027861|organism=Clytia hemisphaerica|type=transcript|length=1890bp
CAATGGATGactactatttctctccgatggtatattggcccgctccttta
gagctttagcgtgggcggccgccaatacgccatcggaatatcagataaat
caTTTTATTCCTATGTTAATAGTGTTAATTATATACTCCCAATGGGATTT
TGTGTGTACATTGAGAAATTTCTTTGAAGTAGAAGTTACTGTAATCATTT
TATATTTGATAATCCTTCGGGTGAAACTGACAGTAATGTATTTTTTACTA
GTTgacaaatacaccttttcgaccgtagtcgcgcgggcattttttgtccg
ccttatcccactaaaaccgttccaatccttttttgacgtatttctctatt
gtctattggtgcaaaaaaaaagttttagtgggataaagcggactacggtc
gaaaaggtgtatatagGTTTAATTCTATGACATAAATTAGAAATTTTACC
ATAAattagaaatttattttctaaacgAGCGCTAAAATATTGTCCTTTGC
CTCGTTGTAGATATTATCAGAAGCTTTCATTGATTGTCACAAATCAAGCT
CAGCTGCCGGAACTCCTTTCGCCTTAAAAGTGTTCATCTCTGGCAGAAAC
AGACTCGAAAATGAAGGAGCAAAGGCGCTTAGTAAAGCTTTCAAGTTACT
GGGCAGTTTGGAGGAGATTACAATGCCGCAGAATGGAATTCGCCCAGATG
GAGTTTCCATATTATGTGAagcttttaaagaaaatctgaATCTAAAGgTC
ATCAACATTAACGATAACACGTGCACTTTGTCTGGTGCTTCTTCTCTTGC
CGAGtgttTACCACTTCTCACCAAACTTGAAGTTCTTGATGTTGGCGATT
GTCTAGTTAGAAATAACGGAGCAAAGGTTTTGGCCCCCTCAATAGCTGCA
TGCAATTCATTAAagACCATCAACTTATCATTCAATGAGATTCGACAAGA
TGGGGCTCTTGCCGtcgttaattgcattcgaaataaAAATCATCTTGAAA
TGCTGAATCTTGATGGAAATGAACTCGAATCTATAGAAGAGATCCAGGAT
CGAATGTCGGAGTTCAATATGATCAACTCACTTGGTCCGTTTGATGACAA
TGAAGAGCCTGATTCCGATGAAGAGAATGACAATGATGAGGAGGATGAAG
AGGGGGAGGAAGAAGATGATGAAAAGAAAGCAAACATTGACGACCTGGCG
CTGCAAATTACTGGCATTGCGCTAGATAATCAATCACCTCTACTGAAAGA
TCAATCCGATCAATGACAGATTTGCTGCTGCCTTTGCCTGTTGATGTGAT
GACGACAGATTAGTTCATATTTTTTGAGATCGCCGAAAATATATACACCG
taagaataataaggaaaaATAAGAGTTAGTGCCAAtattgtttttgatat
tttcttgtttttgacaGTTTCTAAGTATTATTAACACTACTAGGACCTAC
TCTACGTAACATTCCCATTGACGTGTTAACATAATGGGATTTATATCGAT
GTGAATaattttagactattttatgcaatatattttatttattgtaaAAA
ATTATTACCATAAACTTTTTTAAGCAGATTAATTTCGTGTctagttttta
ttttaaaactgtCACTAATGGGCTGATATGCTTTAAATTTTTAGTATTTG
TACAAGACATTATATActattttatgaattttgtaAATGACGTGATTCAA
ATGATGTTTGGGTCTGGTACTCCCCGTTAAATGGATCTTGACGATCTAGA
ACTGGCTGATATTTTTTACTCTTTGACCTGATCTCCGTCTTGTGACAGGA
AGAAGAAACcctcaatattaaaaaaaaaacaatcatcgGTTGGCTTCTGC
TCTACCCCGAAACCCTTATGCTCCTTCCACTTGCACCAGC

Run BLAST on NCBI

transcript from alignment at sc0000649:24831..28318+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00027861 ID=TCONS_00027861|Name=TCONS_00027861|organism=Clytia hemisphaerica|type=transcript|length=3488bp|location=Sequence derived from alignment at sc0000649:24831..28318+ (Clytia hemisphaerica)
CAATGGATGactactatttctctccgatggtatattggcccgctccttta
gagctttagcgtgggcggccgccaatacgccatcggaatatcagataaat
caTTTTATTCCTATGTTAATAGTGTTAATTATATACTCCCAATGGGATTT
TGTGTGTACATTGAGAAATTTCTTTGAAGTAGAAGTTACTGTAATCATTT
TATATTTGATAATCCTTCGGGTGAAACTGACAGTAATGTATTTTTTACTA
GTTgacaaatacaccttttcgaccgtagtcgcgcgggcattttttgtccg
ccttatcccactaaaaccgttccaatccttttttgacgtatttctctatt
gtctattggtgcaaaaaaaaagttttagtgggataaagcggactacggtc
gaaaaggtgtatatagGTTTAATTCTATGACATAAATTAGAAATTTTACC
ATAAattagaaatttattttctaaacgAGCGCTAAAATATTGTCCTTTGC
CTCGTTGTAGATATTATCAGAAGCTTTCATTGATTGTCACAAATCAAGCT
CAGCTGCCGGAACTCCTTTCGCCTTAAAAGTGTTCATCTCTGGCAGAAAC
AGACTCGAAAATGAAGGAGCAAAGGCGCTTAGTAAAGCTTTCAAGGTATT
GTTCTTTCTTATAGAGAAGAATCTAACCTCGATTGAGGTGGCATTGCGTT
TGACAGTACATCACTCAATTGTGTCAAGAGTgatgtaaaaaaaaacctaa
ctatttttttaaatgtaatatAAAAACTAAAGTAGTTATATAtcaaaaac
aaattgtaaattCTGGTAAATTCATGATAAGTGTCGCAGCACTCTTAGAT
TCATCCAAGTttcgaaacaattaaaaagGACCTCTGGATTTTAGCAAAGG
ACAATATCTTACCATTACAGTTTTGTCGTTGTGTTGCATTTATACCACCT
TCATTCTACCTTTATACGCCTCACCTATGGTACAAGCTCTTTTTTAAGAG
CTTTTATGAAATCTTTGTAATGAAGAttctttttcagatattttatTTTA
GGTGTGACACTCTTAGAGAGTGGTGTTTATCGGGCAGCGCTAAGTAGAGA
AAAAAGGATAATTAACTTTTACTTCACTTTAGTTACTGGGCAGTTTGGAG
GAGATTACAATGCCGCAGAATGGAATTCGCCCAGATGGAGTTTCCATATT
ATGTGAagcttttaaagaaaatctgaATCTAAAGGTTTTTTATTTACACT
AGAATGATAATTTTCAGTGTATTACaccgtttgtttgaaaaaagtgtaca
agtttGAAAGCTACCTTTTTAGTCTACACGTTGACAGCTCTTAATAAATT
GATTCAAATTTGTGCACTCTTTTTAGACAAACGCCAGGTAATACGCCCAT
TATAATTTGAATGAAGTTTAGtgacttttatcaatttttatcaattGAAT
TAAATAGAACTGCTGCAATAAACCCTTTTTTCACTGTCGAAAGCAATGAA
TGTTTAAACATTTTTACTGGGCCAATCAAAATTCTACATACCAAAGCAAT
CTTTTTGCTTGGATAGGGTTGACGAATAGATTTATCCAACTCGCCTGAAA
ATCAGACTAATCTTGATAGATAGCATCAAGAATTTCAATACCCTCGTTTA
CAAGGATATATTGTCTTTACTCTATCAACCAATCACAAAGatcgaatttt
ctttttaaggTCATCAACATTAACGATAACACGTGCACTTTGTCTGGTGC
TTCTTCTCTTGCCGAGGTACATTTGTTTTCTGCTATGACTGTTTGCATTA
CAATGGatagtttatttcaaattttttaattgaaatttgcTTTAACCACA
GCttgaaatattgattttttttcagtgttTACCACTTCTCACCAAACTTG
AAGTTCTTGATGTTGGCGATTGTCTAGTTAGAAATAACGGAGCAAAGGTT
TTGGCCCCCTCAATAGCTGCATGCAATTCATTAAaggttttgatatgttt
tttattgataGTCGACAAAATCACTTGTTGTATTATCCATTTTACTCGAT
TAACACATAAGGTTTCTCCTTTTCAACGCTGTTATCTTATTCATTGACTG
TTCTATTTAATacccatacagggggtggaaaAAAGATCCTGTATCCATGT
ATGGACACCCCCTGGAAATACGTCCAAATTTGCAAAAAGAAAACTTAGAA
ATATATATCTCCCCCCCCCCAttagaaaaaatttcttcccttaactTTAA
AGTGAGGTAGACGAAGTAAAATCAGTATTTTACCCCCTGagaattttaga
ataactttcaACCGCTTCGTCATCAAAGCCCTTGGAAAAACCGActataa
aatggaatgacctAATACTGATCAAGATTCTTTTCATCCTGTCCAACTCT
GTATTCTTCCTAGACCATCAACTTATCATTCAATGAGATTCGACAAGATG
GGGCTCTTGCCGtcgttaattgcattcgaaataaAAATCATCTTGAAATG
CTGAATCTTGATGGTAGGATTTTGATACattatgtttttgaaatttgccT
GCGTGTCTGATCTTTTGCTTGTAACGGAACTTGAATTGGATCTTCTCTTT
AACACACATTCAGGAAATGAACTCGAATCTATAGAAGAGATCCAGGATCG
AATGTCGGAGTTCAATATGATCAACTCACTTGGTCCGTTTGATGACAATG
AAGAGCCTGATTCCGATGAAGAGAATGACAATGATGAGGAGGATGAAGAG
GGGGAGGAAGAAGATGATGAAAAGAAAGCAAACATTGACGACCTGGCGCT
GCAAATTACTGGCATTGCGCTAGATAATCAATCACCTCTACTGAAAGATC
AATCCGATCAATGACAGATTTGCTGCTGCCTTTGCCTGTTGATGTGATGA
CGACAGATTAGTTCATATTTTTTGAGATCGCCGAAAATATATACACCGta
agaataataaggaaaaATAAGAGTTAGTGCCAAtattgtttttgatattt
tcttgtttttgacaGTTTCTAAGTATTATTAACACTACTAGGACCTACTC
TACGTAACATTCCCATTGACGTGTTAACATAATGGGATTTATATCGATGT
GAATaattttagactattttatgcaatatattttatttattgtaaAAAAT
TATTACCATAAACTTTTTTAAGCAGATTAATTTCGTGTctagtttttatt
ttaaaactgtCACTAATGGGCTGATATGCTTTAAATTTTTAGTATTTGTA
CAAGACATTATATActattttatgaattttgtaAATGACGTGATTCAAAT
GATGTTTGGGTCTGGTACTCCCCGTTAAATGGATCTTGACGATCTAGAAC
TGGCTGATATTTTTTACTCTTTGACCTGATCTCCGTCTTGTGACAGGAAG
AAGAAACcctcaatattaaaaaaaaaacaatcatcgGTTGGCTTCTGCTC
TACCCCGAAACCCTTATGCTCCTTCCACTTGCACCAGC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_015750	XLOC_015750	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000649	supercontig	sc0000649:24831..28318 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.70621	9.57708	11.3775	11.7075	157.136	119.438	33.2157	32.9388	21.9144	23.9583	15.5277	16.4309	8.87748	7.79774	13.3149	14.2692	24.6258	21.6214	5.52402	7.41784	13.0188	12.6202	26.9923	24.803	11.4863	13.5255	21.4523	14.8055	23.0308	21.8237

Blast

[Close]

BLAST of TCONS_00027861 vs. Swiss-Prot (Human)
Match: RAGP1 (Ran GTPase-activating protein 1 OS=Homo sapiens GN=RANGAP1 PE=1 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 5.872e-48
Identity = 98/194 (50.52%), Postives = 136/194 (70.10%), Query Frame = 1

Query:  511 ILSEAFIDCHKSSSAAGTPFALKVFISGRNRLENEGAKALSKAFKLLGSLEEITMPQNGIRPDGVSILCEAFKENLNLKVININDNTCTLSGASSLAECLPLLTKLEVLDVGDCLVRNNGAKVLAPSI-AACNSLKTINLSFNEIRQDGALAVVNCIRNKNHLEMLNLDGNEL--ESIEEIQDRMSEFNMINSL 1083
            IL+ A  +CH+ SSA G P ALKVF++GRNRLEN+GA AL++AF+++G+LEE+ MPQNGI   G++ L +AF  N  L+VIN+NDNT T  GA ++AE L  L ++EV++ GDCLVR+ GA  +A +I      LK +NLSF EI++D ALAV   + +K  LE L+L+GN L  E  E++Q+ +  FNM   L
Sbjct:  161 ILAAALTECHRKSSAQGKPLALKVFVAGRNRLENDGATALAEAFRVIGTLEEVHMPQNGINHPGITALAQAFAVNPLLRVINLNDNTFTEKGAVAMAETLKTLRQVEVINFGDCLVRSKGAVAIADAIRGGLPKLKELNLSFCEIKRDAALAVAEAMADKAELEKLDLNGNTLGEEGCEQLQEVLEGFNMAKVL 354

The following BLAST results are available for this feature:

BLAST of TCONS_00027861 vs. Swiss-Prot (Human)

BLAST of TCONS_00027861 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RAGP1	5.872e-48	50.52	Ran GTPase-activating protein 1 OS=Homo sapiens GN...	[more]

You are here

TCONS_00027861 (transcript) - C. hemisphaerica