TCONS_00027846 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027846
Unique NameTCONS_00027846
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length338

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027846 ID=TCONS_00027846|Name=TCONS_00027846|organism=Clytia hemisphaerica|type=transcript|length=338bp
CCTGTTTTAAAATGATACCAATCAAGCGCAACATAGTAGAGTACCGGATG
CAAAGCCAACTTGTGGTACGTTTGATAAAATTCAAGTCCCGATTTCTTAC
CACCAAAATGATAGAAATGTGATCTCCTGTTCAGTGGTCGTAAAAATCCT
CCATACCTTAGACAATGTttcaagaattgatgaaaagtGATAATCGTACA
TCGTCCAATCATATTCTTAAAAGCCTCAATACCTTCTTCCGGAAGTTTAT
GTGTATCTGAGATGAGTGACCAAGCATCTGTTGGTTTCGTATTTATACCA
ACAGGCTTCACTAAGCGCTCATCCACAAATTGTATTTT
Run BLAST on NCBI

protein sequence of TCONS_00027846-protein

>TCONS_00027846-protein ID=TCONS_00027846-protein|Name=TCONS_00027846-protein|organism=Clytia hemisphaerica|type=polypeptide|length=112bp
KIQFVDERLVKPVGINTKPTDAWSLISDTHKLPEEGIEAFKNMIGRCTII
TFHQFLKHCLRYGGFLRPLNRRSHFYHFGGKKSGLEFYQTYHKLALHPVL
YYVALDWYHFKT
Run BLAST on NCBI

transcript from alignment at sc0000647:24154..24491

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027846 ID=TCONS_00027846|Name=TCONS_00027846|organism=Clytia hemisphaerica|type=transcript|length=338bp|location=Sequence derived from alignment at sc0000647:24154..24491 (Clytia hemisphaerica)
AAAATACAATTTGTGGATGAGCGCTTAGTGAAGCCTGTTGGTATAAATAC
GAAACCAACAGATGCTTGGTCACTCATCTCAGATACACATAAACTTCCGG
AAGAAGGTATTGAGGCTTTTAAGAATATGATTGGACGATGTACGATTATC
acttttcatcaattcttgaaACATTGTCTAAGGTATGGAGGATTTTTACG
ACCACTGAACAGGAGATCACATTTCTATCATTTTGGTGGTAAGAAATCGG
GACTTGAATTTTATCAAACGTACCACAAGTTGGCTTTGCATCCGGTACTC
TACTATGTTGCGCTTGATTGGTATCATTTTAAAACAGG

Coding sequence (CDS) from alignment at sc0000647:24154..24491

>TCONS_00027846 ID=TCONS_00027846|Name=TCONS_00027846|organism=Clytia hemisphaerica|type=CDS|length=336bp|location=Sequence derived from alignment at sc0000647:24154..24491 (Clytia hemisphaerica)
AAAATACAATTTGTGGATGAGCGCTTAGTGAAGCCTGTTGGTATAAATAC
GAAACCAACAGATGCTTGGTCACTCATCTCAGATACACATAAACTTCCGG
AAGAAGGTATTGAGGCTTTTAAGAATATGATTGGACGATGTACGATTATC
acttttcatcaattcttgaaACATTGTCTAAGGTATGGAGGATTTTTACG
ACCACTGAACAGGAGATCACATTTCTATCATTTTGGTGGTAAGAAATCGG
GACTTGAATTTTATCAAACGTACCACAAGTTGGCTTTGCATCCGGTACTC
TACTATGTTGCGCTTGATTGGTATCATTTTAAAACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015735XLOC_015735Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027846-exon-sc0000647-1491911889:24154..24491TCONS_00027846-exon-sc0000647-1491911889:24154..24491Clytia hemisphaericaexon
TCONS_00027846-exon-sc0000647-1510915933:24154..24491TCONS_00027846-exon-sc0000647-1510915933:24154..24491Clytia hemisphaericaexon
TCONS_00027846-exon-sc0000647-1575043694:24154..24491TCONS_00027846-exon-sc0000647-1575043694:24154..24491Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027846-proteinTCONS_00027846-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000647supercontigsc0000647:24154..24491 .
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027846 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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