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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027844 ID=TCONS_00027844|Name=TCONS_00027844|organism=Clytia hemisphaerica|type=transcript|length=705bp
CCTGTTTTAAAATGATACCAATCAAGCGCAACATAGTAGAGTACCGGATG
CAAAGCCAACTTGTGGTACGTTTGATAAAATTCAAGTCCCGATTTCTTAC
CACCAAAATGATAGAAATGTGATCTCCTGTTCAGTGGTCGTAAAAATCCT
CCATACCTTAGACAATGTttcaagaattgatgaaaagtGATAATCGTACA
CCGTCCAATCATATTCTTAAAAGCCTCAATACCTTCTTCCGGAAGTTTAT
GTGTCTCTGAGATGAGTGACCAAGCATCTGTTGGTTTAGTATTTATACCA
ACAGGCTTCACTAAGCACTCATCCACAAATTGTATTTTTGCCAATGCTAC
AACAGAACCTTCTTTTTTCTCTATATAGCCAGCATTATTATCATCCATTC
CATTATTCCTACTGGAAAAACTTTCAACACCCTGGGTGTTACCCTCGCCG
TCCATAGAGGTAGCCGTAGAGGGCCCAGTCTCGCTGTTCATAGATGGAGC
CATAGAGGGCCCAACATCAACTACGCTAGAGGAATGACTGATCAAATGTG
TACTTTCAGTCGCTGCTCCATCGCCTCTACCATTATTATAAGAAACTCCT
TTCTCGGCAGGTTTCTGTCTACAACAACCCTGCGTAAACCAAACAGCAGA
GCAAGAGAGACAACAAGACCAGCAACATTCTATTTTCAACCAACTTGAAT
AATCA Run BLAST on NCBI protein sequence of TCONS_00027844-protein >TCONS_00027844-protein ID=TCONS_00027844-protein|Name=TCONS_00027844-protein|organism=Clytia hemisphaerica|type=polypeptide|length=234bp
DYSSWLKIECCWSCCLSCSAVWFTQGCCRQKPAEKGVSYNNGRGDGAATE
STHLISHSSSVVDVGPSMAPSMNSETGPSTATSMDGEGNTQGVESFSSRN
NGMDDNNAGYIEKKEGSVVALAKIQFVDECLVKPVGINTKPTDAWSLISE
THKLPEEGIEAFKNMIGRCTIITFHQFLKHCLRYGGFLRPLNRRSHFYHF
GGKKSGLEFYQTYHKLALHPVLYYVALDWYHFKT Run BLAST on NCBI transcript from alignment at sc0000647:2..706 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027844 ID=TCONS_00027844|Name=TCONS_00027844|organism=Clytia hemisphaerica|type=transcript|length=705bp|location=Sequence derived from alignment at sc0000647:2..706 (Clytia hemisphaerica)
TGATTATTCAAGTTGGTTGAAAATAGAATGTTGCTGGTCTTGTTGTCTCT
CTTGCTCTGCTGTTTGGTTTACGCAGGGTTGTTGTAGACAGAAACCTGCC
GAGAAAGGAGTTTCTTATAATAATGGTAGAGGCGATGGAGCAGCGACTGA
AAGTACACATTTGATCAGTCATTCCTCTAGCGTAGTTGATGTTGGGCCCT
CTATGGCTCCATCTATGAACAGCGAGACTGGGCCCTCTACGGCTACCTCT
ATGGACGGCGAGGGTAACACCCAGGGTGTTGAAAGTTTTTCCAGTAGGAA
TAATGGAATGGATGATAATAATGCTGGCTATATAGAGAAAAAAGAAGGTT
CTGTTGTAGCATTGGCAAAAATACAATTTGTGGATGAGTGCTTAGTGAAG
CCTGTTGGTATAAATACTAAACCAACAGATGCTTGGTCACTCATCTCAGA
GACACATAAACTTCCGGAAGAAGGTATTGAGGCTTTTAAGAATATGATTG
GACGGTGTACGATTATCacttttcatcaattcttgaaACATTGTCTAAGG
TATGGAGGATTTTTACGACCACTGAACAGGAGATCACATTTCTATCATTT
TGGTGGTAAGAAATCGGGACTTGAATTTTATCAAACGTACCACAAGTTGG
CTTTGCATCCGGTACTCTACTATGTTGCGCTTGATTGGTATCATTTTAAA
ACAGG Coding sequence (CDS) from alignment at sc0000647:2..706 >TCONS_00027844 ID=TCONS_00027844|Name=TCONS_00027844|organism=Clytia hemisphaerica|type=CDS|length=702bp|location=Sequence derived from alignment at sc0000647:2..706 (Clytia hemisphaerica)
GATTATTCAAGTTGGTTGAAAATAGAATGTTGCTGGTCTTGTTGTCTCTC
TTGCTCTGCTGTTTGGTTTACGCAGGGTTGTTGTAGACAGAAACCTGCCG
AGAAAGGAGTTTCTTATAATAATGGTAGAGGCGATGGAGCAGCGACTGAA
AGTACACATTTGATCAGTCATTCCTCTAGCGTAGTTGATGTTGGGCCCTC
TATGGCTCCATCTATGAACAGCGAGACTGGGCCCTCTACGGCTACCTCTA
TGGACGGCGAGGGTAACACCCAGGGTGTTGAAAGTTTTTCCAGTAGGAAT
AATGGAATGGATGATAATAATGCTGGCTATATAGAGAAAAAAGAAGGTTC
TGTTGTAGCATTGGCAAAAATACAATTTGTGGATGAGTGCTTAGTGAAGC
CTGTTGGTATAAATACTAAACCAACAGATGCTTGGTCACTCATCTCAGAG
ACACATAAACTTCCGGAAGAAGGTATTGAGGCTTTTAAGAATATGATTGG
ACGGTGTACGATTATCacttttcatcaattcttgaaACATTGTCTAAGGT
ATGGAGGATTTTTACGACCACTGAACAGGAGATCACATTTCTATCATTTT
GGTGGTAAGAAATCGGGACTTGAATTTTATCAAACGTACCACAAGTTGGC
TTTGCATCCGGTACTCTACTATGTTGCGCTTGATTGGTATCATTTTAAAA
CA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027844-exon-sc0000647-1491911889:2..706 | TCONS_00027844-exon-sc0000647-1491911889:2..706 | Clytia hemisphaerica | exon |
| TCONS_00027844-exon-sc0000647-1510915933:2..706 | TCONS_00027844-exon-sc0000647-1510915933:2..706 | Clytia hemisphaerica | exon |
| TCONS_00027844-exon-sc0000647-1575043694:2..706 | TCONS_00027844-exon-sc0000647-1575043694:2..706 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000647 | supercontig | sc0000647:2..706 . |
Blast
The following BLAST results are available for this feature:
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