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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027837 ID=TCONS_00027837|Name=TCONS_00027837|organism=Clytia hemisphaerica|type=transcript|length=1629bp
CAGGCATGAAAAGAGTTGTCGTTGTTAACTCGTACCACGGTATAAAAGAA
GCACTGGTGACGAGAAGTAACGATTTCGCCGGTCGCCCAATCAGCGGTAA
TATACACGTCCAAATGATCACAAATAATGGTAAAGGTTTGACGTCTTCTG
ATTATTCCAAAAAGTGGTCATTGCTGAGGAAAGTCACATACAAGAGTTTA
CACTTATACGGGTCAGGAATGAAAAATATCGAAGAAATCGTAATCGATGA
AGTCGAGAAAATGTGTTCGTTGCTTTCCAAAGAGATTGGACGTCCGACCA
TCATTGATCAATATATAGGAGGCTCACTCATCAGTACCATTCACTACATT
TGCTTCAAAAAGAAATACCACACAAATGATGACGAGTTCCTACACATATT
AAAGTACATGAAATTAATAAGCGATGGCTTAGCTCCTGGACAGCTAATCT
CTATCTTCCCTTGGCTCCGTTTTTTTCCGGACACTCAACGATTCCGAAAG
TTCAAAGAAGGAATTACACTTCGACGTGCTTTCATGCATAAAATGTTCGA
GGAACATATTGCGTCTTTTAACCCGGAGAAGATTAGAGATGTGACAGATA
ATCTTATCGCCTTCTCGCAAAACAAACAGCTACTGGAGAGTGTGGAAATA
CAAGATTGGACGCAGAAAGATATTCTCGAAGCTGTTATACCTTCGTTGTT
TTTCGCAGCAGTAGAAACCTCCCTTACGACCATTCGATGGTGCCTGATTT
ACTTGATACGAAACCCACATGTTCAGACAAAGATATATGAAGAAATTTTA
CAGAATGTCGGACTGAAACGTCAGACTGAAGCTGCAGATGTTGATTCTCT
ACCTTTTGTTCAAGCAGTCATGTTAGAAACAAATCGTCGAGCGTCCATTC
TACCTATCAATGTCCCTCATAAAACCTTAGTAGATACATCGGTTGTTGGC
AAAACAGTTCCTAAAGACACACGAGTGTTCTTCAATCTATACAGCATGCA
TCACGATCCTACACACTGGGATGAACCAGGGAAATTCAAACCAGAACGTT
GGTTGAATGCTGATGGAAGTTTGAAGAAAGAAAAGGCGACACACTATCTT
CCTTTTGGAGCTGGTATTCGTGTTTGTCTTGGAGAGAGAATGGCAAAAAT
GCAAATGTTTTTGATTGTCACACGGTTATtgacgaattttgaaatttcac
ttGCTCCAGGAGAAACCTTACCTGGCTCCGAGGATGGCGTTCTTGGAATC
ACACTTCAACCACCACCCTTTAAAATGATTCTGAATACCAGAAAGATTGA
ATGATACATAACTCAATTTATATATCTCACTTTTCAATGTACTGTAAACT
CTGATACAAAGATAATTTtgcatcaattttgatttcgtcagtttgtcaat
tttatttttctaaatgaatttatacaaaaataaaacggtaattttGTAAT
CATTGGATTGAgctcaacatgttcttattagTTCAGGAGATGAAGCAGCG
CTGTCAAATTCTACGAGAAATTTAACTTTTCAGGGCTTTCGGAAATGTTG
GATGTCAAATTCGACAGCGCTGCGGTCTTCTGCAACATCCCACTTTATCT
TATTGATCCCACCATGTTATTAATTTATG Run BLAST on NCBI protein sequence of TCONS_00027837-protein >TCONS_00027837-protein ID=TCONS_00027837-protein|Name=TCONS_00027837-protein|organism=Clytia hemisphaerica|type=polypeptide|length=433bp
GMKRVVVVNSYHGIKEALVTRSNDFAGRPISGNIHVQMITNNGKGLTSSD
YSKKWSLLRKVTYKSLHLYGSGMKNIEEIVIDEVEKMCSLLSKEIGRPTI
IDQYIGGSLISTIHYICFKKKYHTNDDEFLHILKYMKLISDGLAPGQLIS
IFPWLRFFPDTQRFRKFKEGITLRRAFMHKMFEEHIASFNPEKIRDVTDN
LIAFSQNKQLLESVEIQDWTQKDILEAVIPSLFFAAVETSLTTIRWCLIY
LIRNPHVQTKIYEEILQNVGLKRQTEAADVDSLPFVQAVMLETNRRASIL
PINVPHKTLVDTSVVGKTVPKDTRVFFNLYSMHHDPTHWDEPGKFKPERW
LNADGSLKKEKATHYLPFGAGIRVCLGERMAKMQMFLIVTRLLTNFEISL
APGETLPGSEDGVLGITLQPPPFKMILNTRKIE Run BLAST on NCBI transcript from alignment at sc0000647:165731..167938- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027837 ID=TCONS_00027837|Name=TCONS_00027837|organism=Clytia hemisphaerica|type=transcript|length=2208bp|location=Sequence derived from alignment at sc0000647:165731..167938- (Clytia hemisphaerica)
CAGGCATGAAAAGAGTTGTCGTTGTTAACTCGTACCACGGTATAAAAGAA
GCACTGGTGACGAGAAGTAACGATTTCGCCGGTCGCCCAATCAGCGGTAA
TATACACGTCCAAATGATCACAAATAATGGTAAAGGTTTGACGTCTTCTG
ATTATTCCAAAAAGTGGTCATTGCTGAGGAAAGTCACATACAAGAGTTTA
CACTTATACGGGTCAGGAATGAAAAATATCGAAGAAATCGTAATCGATGA
AGTCGAGAAAATGTGTTCGTTGCTTTCCAAAGAGATTGGACGTCCGACCA
TCATTGATCAATATATAGGTAATCTTTTACGTTCAAGTTAAAAGAAAGAG
ACTTTGGTCTATAATTTACAACTTTAAGTTTATGCCGCACGTATGGAGGA
CAATCAACAGCTAACAAGCTAACAGCTTAAAACAAGCTTTGATGTCATTG
AGCACTCTCGGAAGATAGAAGAAAATAGATTTATAGGTAATCTTTACTGA
GTATCCATAAGGCTGAAATCAATTTTTTTAACAATGGCCTTTTTGACCTC
CTTCTTGACCCTTAAAGTTACCGATAAGTCGAGATATTCAAAAGTCTCTC
TGAAAAACTTCTCCAGCTATATCACAATGAAAAAGAAAGAAAGACATTTT
CTAAGAACAGTTTGAGAGCACTTGAAGCCTGACAATTAGGTAGAGCCTTG
TAACAAAACATCTTATTCATGATATGCACCATTGCAACGTCTTCTGACAT
TACATTACGGACCCAAGAGCTGATTGGGTCCGGCGTGTAAGTGACGTAAA
ATTGATCAATACGTCACTTTCAACCAATCAGCTGTTGGGTCCGTGGAAGA
CATTGCAGTGGTGCATATCATCAATAACCTGTTGATTTTTATTTCAGGAG
GCTCACTCATCAGTACCATTCACTACATTTGCTTCAAAAAGAAATACCAC
ACAAATGATGACGAGTTCCTACACATATTAAAGTACATGAAATTAATAAG
CGATGGCTTAGCTCCTGGACAGCTAATCTCTATCTTCCCTTGGCTCCGTT
TTTTTCCGGACACTCAACGATTCCGAAAGTTCAAAGAAGGAATTACACTT
CGACGTGCTTTCATGCATAAAATGTTCGAGGAACATATTGCGTCTTTTAA
CCCGGAGAAGATTAGAGATGTGACAGATAATCTTATCGCCTTCTCGCAAA
ACAAACAGCTACTGGAGAGTGTGGAAATACAAGATTGGACGCAGAAAGAT
ATTCTCGAAGCTGTTATACCTTCGTTGTTTTTCGCAGCAGTAGAAACCTC
CCTTACGACCATTCGATGGTGCCTGATTTACTTGATACGAAACCCACATG
TTCAGACAAAGATATATGAAGAAATTTTACAGAATGTCGGACTGAAACGT
CAGACTGAAGCTGCAGATGTTGATTCTCTACCTTTTGTTCAAGCAGTCAT
GTTAGAAACAAATCGTCGAGCGTCCATTCTACCTATCAATGTCCCTCATA
AAACCTTAGTAGATACATCGGTTGTTGGCAAAACAGTTCCTAAAGACACA
CGAGTGTTCTTCAATCTATACAGCATGCATCACGATCCTACACACTGGGA
TGAACCAGGGAAATTCAAACCAGAACGTTGGTTGAATGCTGATGGAAGTT
TGAAGAAAGAAAAGGCGACACACTATCTTCCTTTTGGAGCTGGTATTCGT
GTTTGTCTTGGAGAGAGAATGGCAAAAATGCAAATGTTTTTGATTGTCAC
ACGGTTATTGACGAATTTTGAAATTTCACTTGCTCCAGGAGAAACCTTAC
CTGGCTCCGAGGATGGCGTTCTTGGAATCACACTTCAACCACCACCCTTT
AAAATGATTCTGAATACCAGAAAGATTGAATGATACATAACTCAATTTAT
ATATCTCACTTTTCAATGTACTGTAAACTCTGATACAAAGATAATTTTGC
ATCAATTTTGATTTCGTCAGTTTGTCAATTTTATTTTTCTAAATGAATTT
ATACAAAAATAAAACGGTAATTTTGTAATCATTGGATTGAGCTCAACATG
TTCTTATTAGTTCAGGAGATGAAGCAGCGCTGTCAAATTCTACGAGAAAT
TTAACTTTTCAGGGCTTTCGGAAATGTTGGATGTCAAATTCGACAGCGCT
GCGGTCTTCTGCAACATCCCACTTTATCTTATTGATCCCACCATGTTATT
AATTTATG Coding sequence (CDS) from alignment at sc0000647:165731..167938- >TCONS_00027837 ID=TCONS_00027837|Name=TCONS_00027837|organism=Clytia hemisphaerica|type=CDS|length=2604bp|location=Sequence derived from alignment at sc0000647:165731..167938- (Clytia hemisphaerica)
GAGGCTCACTCATCAGTACCATTCACTACATTTGCTTCAAAAAGAAATAC
CACACAAATGATGACGAGTTCCTACACATATTAAAGTACATGAAATTAAT
AAGCGATGGCTTAGCTCCTGGACAGCTAATCTCTATCTTCCCTTGGCTCC
GTTTTTTTCCGGACACTCAACGATTCCGAAAGTTCAAAGAAGGAATTACA
CTTCGACGTGCTTTCATGCATAAAATGTTCGAGGAACATATTGCGTCTTT
TAACCCGGAGAAGATTAGAGATGTGACAGATAATCTTATCGCCTTCTCGC
AAAACAAACAGCTACTGGAGAGTGTGGAAATACAAGATTGGACGCAGAAA
GATATTCTCGAAGCTGTTATACCTTCGTTGTTTTTCGCAGCAGTAGAAAC
CTCCCTTACGACCATTCGATGGTGCCTGATTTACTTGATACGAAACCCAC
ATGTTCAGACAAAGATATATGAAGAAATTTTACAGAATGTCGGACTGAAA
CGTCAGACTGAAGCTGCAGATGTTGATTCTCTACCTTTTGTTCAAGCAGT
CATGTTAGAAACAAATCGTCGAGCGTCCATTCTACCTATCAATGTCCCTC
ATAAAACCTTAGTAGATACATCGGTTGTTGGCAAAACAGTTCCTAAAGAC
ACACGAGTGTTCTTCAATCTATACAGCATGCATCACGATCCTACACACTG
GGATGAACCAGGGAAATTCAAACCAGAACGTTGGTTGAATGCTGATGGAA
GTTTGAAGAAAGAAAAGGCGACACACTATCTTCCTTTTGGAGCTGGTATT
CGTGTTTGTCTTGGAGAGAGAATGGCAAAAATGCAAATGTTTTTGATTGT
CACACGGTTATTGACGAATTTTGAAATTTCACTTGCTCCAGGAGAAACCT
TACCTGGCTCCGAGGATGGCGTTCTTGGAATCACACTTCAACCACCACCC
TTTAAAATGATTCTGAATACCAGAAAGATTGAATGAGGCATGAAAAGAGT
TGTCGTTGTTAACTCGTACCACGGTATAAAAGAAGCACTGGTGACGAGAA
GTAACGATTTCGCCGGTCGCCCAATCAGCGGTAATATACACGTCCAAATG
ATCACAAATAATGGTAAAGGTTTGACGTCTTCTGATTATTCCAAAAAGTG
GTCATTGCTGAGGAAAGTCACATACAAGAGTTTACACTTATACGGGTCAG
GAATGAAAAATATCGAAGAAATCGTAATCGATGAAGTCGAGAAAATGTGT
TCGTTGCTTTCCAAAGAGATTGGACGTCCGACCATCATTGATCAATATAT
AGGAGGCTCACTCATCAGTACCATTCACTACATTTGCTTCAAAAAGAAAT
ACCACACAAATGATGACGAGTTCCTACACATATTAAAGTACATGAAATTA
ATAAGCGATGGCTTAGCTCCTGGACAGCTAATCTCTATCTTCCCTTGGCT
CCGTTTTTTTCCGGACACTCAACGATTCCGAAAGTTCAAAGAAGGAATTA
CACTTCGACGTGCTTTCATGCATAAAATGTTCGAGGAACATATTGCGTCT
TTTAACCCGGAGAAGATTAGAGATGTGACAGATAATCTTATCGCCTTCTC
GCAAAACAAACAGCTACTGGAGAGTGTGGAAATACAAGATTGGACGCAGA
AAGATATTCTCGAAGCTGTTATACCTTCGTTGTTTTTCGCAGCAGTAGAA
ACCTCCCTTACGACCATTCGATGGTGCCTGATTTACTTGATACGAAACCC
ACATGTTCAGACAAAGATATATGAAGAAATTTTACAGAATGTCGGACTGA
AACGTCAGACTGAAGCTGCAGATGTTGATTCTCTACCTTTTGTTCAAGCA
GTCATGTTAGAAACAAATCGTCGAGCGTCCATTCTACCTATCAATGTCCC
TCATAAAACCTTAGTAGATACATCGGTTGTTGGCAAAACAGTTCCTAAAG
ACACACGAGTGTTCTTCAATCTATACAGCATGCATCACGATCCTACACAC
TGGGATGAACCAGGGAAATTCAAACCAGAACGTTGGTTGAATGCTGATGG
AAGTTTGAAGAAAGAAAAGGCGACACACTATCTTCCTTTTGGAGCTGGTA
TTCGTGTTTGTCTTGGAGAGAGAATGGCAAAAATGCAAATGTTTTTGATT
GTCACACGGTTATTGACGAATTTTGAAATTTCACTTGCTCCAGGAGAAAC
CTTACCTGGCTCCGAGGATGGCGTTCTTGGAATCACACTTCAACCACCAC
CCTTTAAAATGATTCTGAATACCAGAAAGATTGAATGAGGCATGAAAAGA
GTTGTCGTTGTTAACTCGTACCACGGTATAAAAGAAGCACTGGTGACGAG
AAGTAACGATTTCGCCGGTCGCCCAATCAGCGGTAATATACACGTCCAAA
TGATCACAAATAATGGTAAAGGTTTGACGTCTTCTGATTATTCCAAAAAG
TGGTCATTGCTGAGGAAAGTCACATACAAGAGTTTACACTTATACGGGTC
AGGAATGAAAAATATCGAAGAAATCGTAATCGATGAAGTCGAGAAAATGT
GTTCGTTGCTTTCCAAAGAGATTGGACGTCCGACCATCATTGATCAATAT
ATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027837-exon-sc0000647-1575043694:167621..167938 | TCONS_00027837-exon-sc0000647-1575043694:167621..167938 | Clytia hemisphaerica | exon |
| TCONS_00027837-exon-sc0000647-1575043694:165731..167041 | TCONS_00027837-exon-sc0000647-1575043694:165731..167041 | Clytia hemisphaerica | exon |
| TCONS_00027837-exon-sc0000647-1510915933:167621..167938 | TCONS_00027837-exon-sc0000647-1510915933:167621..167938 | Clytia hemisphaerica | exon |
| TCONS_00027837-exon-sc0000647-1510915933:165731..167041 | TCONS_00027837-exon-sc0000647-1510915933:165731..167041 | Clytia hemisphaerica | exon |
| TCONS_00027837-exon-sc0000647-1491911889:167621..167938 | TCONS_00027837-exon-sc0000647-1491911889:167621..167938 | Clytia hemisphaerica | exon |
| TCONS_00027837-exon-sc0000647-1491911889:165731..167041 | TCONS_00027837-exon-sc0000647-1491911889:165731..167041 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000647 | supercontig | sc0000647:165731..167938 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005506 | iron ion binding |
| GO:0020037 | heme binding |
| GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055114 | oxidation-reduction process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055114 |
oxidation-reduction process |
| molecular_function |
GO:0020037 |
heme binding |
| molecular_function |
GO:0005506 |
iron ion binding |
| molecular_function |
GO:0016705 |
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen |
Blast
BLAST of TCONS_00027837 vs. Swiss-Prot (Human)
Match: CP17A (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Homo sapiens GN=CYP17A1 PE=1 SV=1) HSP 1 Score: 247.669 bits (631), Expect = 3.161e-74 Identity = 137/434 (31.57%), Postives = 226/434 (52.07%), Query Frame = 3
Query: 3 GMKRVVVVNSYHGIKEALVTRSNDFAGRPISGNIHVQMITNNGKGLTSSDYSKKWSLLRKVTYKSLHLYGSGMKNIEEIVIDEVEKMCSLLSKEIGRPTIIDQYIGGSLISTIHYICFKKKYHTNDDEFLHILKYMKLISDGLAPGQLISIFPWLRFFPDTQRFRKFKEGITLRRAFMHKMFEEHIASFNPEKIRDVTDNLIAFSQNKQLLESVEIQD---WTQKDILEAVIPSLFFAAVETSLTTIRWCLIYLIRNPHVQTKIYEEILQNVGLKRQTEAADVDSLPFVQAVMLETNRRASILPINVPHKTLVDTSVVGKTVPKDTRVFFNLYSMHHDPTHWDEPGKFKPERWLNADGSLKKEKATHYLPFGAGIRVCLGERMAKMQMFLIVTRLLTNFEISLAPGETLPGSEDGVLGITLQPPPFKMILNTRK 1295
G K V+V + KE L+ + DF+GRP + + +NN KG+ +D W L R++ + L+ G + +E+I+ E+ +C +L+ G+ I + ++ + I ICF Y D E I Y + I D L+ L+ + PWL+ FP+ + K K + +R ++K+ E + F + I ++ D L+ N + QD + IL I +F A VET+ + ++W L +L+ NP V+ K+YEEI QNVG R +D + L ++A + E R + P+ +PHK VD+S+ V K T V NL+++HH+ W +P +F PER+LN G+ + YLPFGAG R C+GE +A+ ++FLI+ LL F++ + LP S +G+ + FK+ + R+
Sbjct: 69 GTKTTVIVGHHQLAKEVLIKKGKDFSGRPQMATLDIA--SNNRKGIAFADSGAHWQLHRRLAMATFALFKDGDQKLEKIICQEISTLCDMLATHNGQSIDISFPVFVAVTNVISLICFNTSYKNGDPELNVIQNYNEGIIDNLSKDSLVDLVPWLKIFPN-KTLEKLKSHVKIRNDLLNKILENYKEKFRSDSITNMLDTLMQAKMNSDNGNAGPDQDSELLSDNHIL-TTIGDIFGAGVETTTSVVKWTLAFLLHNPQVKKKLYEEIDQNVGFSRTPTISDRNRLLLLEATIREVLRLRPVAPMLIPHKANVDSSIGEFAVDKGTEVIINLWALHHNEKEWHQPDQFMPERFLNPAGTQLISPSVSYLPFGAGPRSCIGEILARQELFLIMAWLLQRFDLEVPDDGQLP-SLEGIPKVVFLIDSFKVKIKVRQ 497
The following BLAST results are available for this feature:
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